ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal33n16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197074.1| Oryza sativa (japonica cultivar-group) unknown ... 398 e-108
2gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 133 5e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
5gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
6gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
7gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
8dbj|AB225160.1| Aspergillus oryzae cDNA, contig sequence: AoEST2011 44 0.37
9dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 44 0.37
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
12gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, co... 42 1.5
13gb|AC164971.2| Mus musculus BAC clone RP23-441D19 from chromosom... 42 1.5
14gb|AY212389.1| Tetraodon nigroviridis clone Tflu9 non-LTR retrot... 42 1.5
15gb|AY212356.1| Takifugu rubripes clone fru3147 non-LTR retrotran... 42 1.5
16gb|AY212355.1| Takifugu rubripes clone fru3131 non-LTR retrotran... 42 1.5
17gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, comp... 40 5.8
18ref|XM_978942.1| PREDICTED: Mus musculus RIKEN cDNA 9130024F11 g... 40 5.8
19ref|XM_993812.1| PREDICTED: Mus musculus RIKEN cDNA 9130024F11 g... 40 5.8
20gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, comple... 40 5.8
21gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, com... 40 5.8
22emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chr... 40 5.8
23emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.8
24gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosom... 40 5.8
25gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, co... 40 5.8
26gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, comp... 40 5.8
27gb|AC079140.6| Homo sapiens BAC clone RP11-478C6 from 4, complet... 40 5.8
28gb|BC105170.1| Bos taurus cDNA clone IMAGE:30957709 40 5.8
29dbj|AK020268.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 5.8
30dbj|AK046737.1| Mus musculus adult male cortex cDNA, RIKEN full-... 40 5.8
31gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell ... 40 5.8
32gb|BC012364.1| Homo sapiens, Similar to likely ortholog of yeast... 40 5.8
33gb|AC099522.3| Homo sapiens chromosome 5 clone RP11-79P5, comple... 40 5.8
34dbj|AP000842.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.8
35gb|U36859.1|HIV1U36859 Human immunodeficiency virus type 1 envel... 40 5.8
36gb|AC174446.2| Mus musculus BAC clone RP23-356N23 from chromosom... 40 5.8 
>ref|NM_197074.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0029C15.6), mRNA
          Length = 2184

 Score =  398 bits (201), Expect = e-108
 Identities = 365/421 (86%)
 Strand = Plus / Plus

                                                                       
Query: 10  aggaagaagggaagtggagctgggagaggtggaagcagcacttcgccctcgntcaggaga 69
           ||||||| |||||||||||||||||||||||||||||||||||||| ||     | ||||
Sbjct: 479 aggaagaggggaagtggagctgggagaggtggaagcagcacttcgcgctaatcgaagaga 538

                                                                       
Query: 70  gcgagcgccttgttgatgaacttcagctacaactccgcactgntgtgtgtagagaagact 129
           |||||||||| || ||||| || ||||||||||| || |||| ||| | |||||| ||||
Sbjct: 539 gcgagcgcctcgtcgatgagctgcagctacaactacggactgctgtttatagagaggact 598

                                                                       
Query: 130 ataggagtgcccacaaactgaagttagctattgctgctacatcaagaaatgatactgttg 189
             |||||||| |||||||||||||| |||||||| |||||||||| ||| |||||||| |
Sbjct: 599 tcaggagtgctcacaaactgaagttggctattgcggctacatcaaaaaacgatactgtgg 658

                                                                       
Query: 190 gcagagcagtatctgagttacatagggccatagaagaggagcgctatctggatgcagctt 249
           |||||||| | ||||| ||| |||| || |||||||||||||||||  |||||||| |||
Sbjct: 659 gcagagcaatttctgacttaaatagtgcaatagaagaggagcgctacatggatgcaactt 718

                                                                       
Query: 250 atattagagaccacgctggtgcaggactgttgggatggtggtctgggatttctgaaagtg 309
           |||||||||| || ||||| |||||| ||||||||||||||||||||||||||| || | 
Sbjct: 719 atattagagatcatgctggcgcaggattgttgggatggtggtctgggatttctggaaatt 778

                                                                       
Query: 310 tgtntgatccatatggtcttataatccgtataagcgctgaacatggncgatacgtggcaa 369
           ||| ||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |
Sbjct: 779 tgtctgatccatatggtcttataattcgtataagtgctgaacatggtcgatatgtggcga 838

                                                                       
Query: 370 aaagttatgatatcaggcagctggcttcagatggccatggttaccctatattcgaaattt 429
           ||||||| |||| ||||||||||  ||||||||||| ||||| ||| ||||| |||||||
Sbjct: 839 aaagttacgataccaggcagctgaattcagatggccctggtttccccatatttgaaattt 898

            
Query: 430 a 430
           |
Sbjct: 899 a 899
to top
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
              sequence
          Length = 148816

 Score =  133 bits (67), Expect = 5e-28
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                          
Query: 278    gttgggatggtggtctgggatttctgaaagtgtgtntgatccatatggtcttataatccg 337
              |||||||||||||||||||||||||| || | ||| ||||||||||||||||||||| ||
Sbjct: 100576 gttgggatggtggtctgggatttctggaaatttgtctgatccatatggtcttataattcg 100517

                                                               
Query: 338    tataagcgctgaacatggncgatacgtggcaaaaagttatgatatcagg 386
              |||||| ||||||||||| ||||| ||||| |||||||| |||| ||||
Sbjct: 100516 tataagtgctgaacatggtcgatatgtggcgaaaagttacgataccagg 100468



 Score =  103 bits (52), Expect = 5e-19
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                          
Query: 91     ttcagctacaactccgcactgntgtgtgtagagaagactataggagtgcccacaaactga 150
              ||||||||||||| || |||| ||| | |||||| ||||  |||||||| ||||||||||
Sbjct: 102258 ttcagctacaactacggactgctgtttatagagaggacttcaggagtgctcacaaactga 102199

                                                             
Query: 151    agttagctattgctgctacatcaagaaatgatactgttggcagagca 197
              |||| |||||||| |||||||||| ||| |||||||| |||||||||
Sbjct: 102198 agttggctattgcggctacatcaaaaaacgatactgtgggcagagca 102152



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                            
Query: 10     aggaagaagggaagtggagctgggagaggtggaagcagcacttcgc 55
              ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 103556 aggaagaggggaagtggagctgggagaggtggaagcagcacttcgc 103511



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 219    atagaagaggagcgctatctggatgcagcttatattagagaccacgctggtgcagga 275
              |||||||||||||||||  |||||||| ||||||||||||| || ||||| ||||||
Sbjct: 101716 atagaagaggagcgctacatggatgcaacttatattagagatcatgctggcgcagga 101660



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 382    tcaggcagctggcttcagatggccatggttaccctatattcgaaattta 430
              |||||||||||  ||||||||||| ||||| ||| ||||| ||||||||
Sbjct: 100106 tcaggcagctgaattcagatggccctggtttccccatatttgaaattta 100058
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  133 bits (67), Expect = 5e-28
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 278      gttgggatggtggtctgggatttctgaaagtgtgtntgatccatatggtcttataatccg 337
                |||||||||||||||||||||||||| || | ||| ||||||||||||||||||||| ||
Sbjct: 17831465 gttgggatggtggtctgggatttctggaaatttgtctgatccatatggtcttataattcg 17831524

                                                                 
Query: 338      tataagcgctgaacatggncgatacgtggcaaaaagttatgatatcagg 386
                |||||| ||||||||||| ||||| ||||| |||||||| |||| ||||
Sbjct: 17831525 tataagtgctgaacatggtcgatatgtggcgaaaagttacgataccagg 17831573



 Score =  103 bits (52), Expect = 5e-19
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                            
Query: 91       ttcagctacaactccgcactgntgtgtgtagagaagactataggagtgcccacaaactga 150
                ||||||||||||| || |||| ||| | |||||| ||||  |||||||| ||||||||||
Sbjct: 17829783 ttcagctacaactacggactgctgtttatagagaggacttcaggagtgctcacaaactga 17829842

                                                               
Query: 151      agttagctattgctgctacatcaagaaatgatactgttggcagagca 197
                |||| |||||||| |||||||||| ||| |||||||| |||||||||
Sbjct: 17829843 agttggctattgcggctacatcaaaaaacgatactgtgggcagagca 17829889



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                              
Query: 10       aggaagaagggaagtggagctgggagaggtggaagcagcacttcgc 55
                ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 17828485 aggaagaggggaagtggagctgggagaggtggaagcagcacttcgc 17828530



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                         
Query: 219      atagaagaggagcgctatctggatgcagcttatattagagaccacgctggtgcagga 275
                |||||||||||||||||  |||||||| ||||||||||||| || ||||| ||||||
Sbjct: 17830325 atagaagaggagcgctacatggatgcaacttatattagagatcatgctggcgcagga 17830381



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 382      tcaggcagctggcttcagatggccatggttaccctatattcgaaattta 430
                |||||||||||  ||||||||||| ||||| ||| ||||| ||||||||
Sbjct: 17831935 tcaggcagctgaattcagatggccctggtttccccatatttgaaattta 17831983
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  133 bits (67), Expect = 5e-28
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 278      gttgggatggtggtctgggatttctgaaagtgtgtntgatccatatggtcttataatccg 337
                |||||||||||||||||||||||||| || | ||| ||||||||||||||||||||| ||
Sbjct: 17840718 gttgggatggtggtctgggatttctggaaatttgtctgatccatatggtcttataattcg 17840777

                                                                 
Query: 338      tataagcgctgaacatggncgatacgtggcaaaaagttatgatatcagg 386
                |||||| ||||||||||| ||||| ||||| |||||||| |||| ||||
Sbjct: 17840778 tataagtgctgaacatggtcgatatgtggcgaaaagttacgataccagg 17840826



 Score =  103 bits (52), Expect = 5e-19
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                            
Query: 91       ttcagctacaactccgcactgntgtgtgtagagaagactataggagtgcccacaaactga 150
                ||||||||||||| || |||| ||| | |||||| ||||  |||||||| ||||||||||
Sbjct: 17839036 ttcagctacaactacggactgctgtttatagagaggacttcaggagtgctcacaaactga 17839095

                                                               
Query: 151      agttagctattgctgctacatcaagaaatgatactgttggcagagca 197
                |||| |||||||| |||||||||| ||| |||||||| |||||||||
Sbjct: 17839096 agttggctattgcggctacatcaaaaaacgatactgtgggcagagca 17839142



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                              
Query: 10       aggaagaagggaagtggagctgggagaggtggaagcagcacttcgc 55
                ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 17837738 aggaagaggggaagtggagctgggagaggtggaagcagcacttcgc 17837783



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                         
Query: 219      atagaagaggagcgctatctggatgcagcttatattagagaccacgctggtgcagga 275
                |||||||||||||||||  |||||||| ||||||||||||| || ||||| ||||||
Sbjct: 17839578 atagaagaggagcgctacatggatgcaacttatattagagatcatgctggcgcagga 17839634



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 382      tcaggcagctggcttcagatggccatggttaccctatattcgaaattta 430
                |||||||||||  ||||||||||| ||||| ||| ||||| ||||||||
Sbjct: 17841188 tcaggcagctgaattcagatggccctggtttccccatatttgaaattta 17841236
to top
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0313E01, complete sequence
          Length = 149215

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    gagctgggagaggtggaagcag 47
             ||||||||||||||||||||||
Sbjct: 65667 gagctgggagaggtggaagcag 65688
to top
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0029P13, complete sequence
          Length = 158506

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    gagctgggagaggtggaagcag 47
             ||||||||||||||||||||||
Sbjct: 28569 gagctgggagaggtggaagcag 28590
to top
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0051D10, complete sequence
          Length = 140272

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 26    gagctgggagaggtggaagcag 47
             ||||||||||||||||||||||
Sbjct: 44186 gagctgggagaggtggaagcag 44165
to top
>dbj|AB225160.1| Aspergillus oryzae cDNA, contig sequence: AoEST2011
          Length = 1312

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 67  agagcgagcgccttgttgatga 88
           ||||||||||||||||||||||
Sbjct: 476 agagcgagcgccttgttgatga 455
to top
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 67      agagcgagcgccttgttgatga 88
               ||||||||||||||||||||||
Sbjct: 2045709 agagcgagcgccttgttgatga 2045730
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 26       gagctgggagaggtggaagcag 47
                ||||||||||||||||||||||
Sbjct: 25301556 gagctgggagaggtggaagcag 25301577



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 26       gagctgggagaggtggaagcag 47
                ||||||||||||||||||||||
Sbjct: 25190397 gagctgggagaggtggaagcag 25190418
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 26       gagctgggagaggtggaagcag 47
                ||||||||||||||||||||||
Sbjct: 25620226 gagctgggagaggtggaagcag 25620247



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 26       gagctgggagaggtggaagcag 47
                ||||||||||||||||||||||
Sbjct: 25509055 gagctgggagaggtggaagcag 25509076
to top
>gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, complete sequence
          Length = 220622

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 10    aggaagaagggaagtggagctgggagagg 38
             |||||||||||||| |||| |||||||||
Sbjct: 16756 aggaagaagggaagaggaggtgggagagg 16728
to top
>gb|AC164971.2| Mus musculus BAC clone RP23-441D19 from chromosome 9, complete sequence
          Length = 213482

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 10    aggaagaagggaagtggagctgggagagg 38
             |||||||||||||| |||| |||||||||
Sbjct: 74399 aggaagaagggaagaggaggtgggagagg 74427
to top
>gb|AY212389.1| Tetraodon nigroviridis clone Tflu9 non-LTR retrotransposon reverse
           transcriptase, partial sequence
          Length = 615

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 tggtggtctgggatttctgaa 305
           |||||||||||||||||||||
Sbjct: 61  tggtggtctgggatttctgaa 41
to top
>gb|AY212356.1| Takifugu rubripes clone fru3147 non-LTR retrotransposon reverse
           transcriptase, partial sequence
          Length = 367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 tggtggtctgggatttctgaa 305
           |||||||||||||||||||||
Sbjct: 93  tggtggtctgggatttctgaa 73
to top
>gb|AY212355.1| Takifugu rubripes clone fru3131 non-LTR retrotransposon reverse
           transcriptase, partial sequence
          Length = 367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 tggtggtctgggatttctgaa 305
           |||||||||||||||||||||
Sbjct: 93  tggtggtctgggatttctgaa 73
to top
>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence
          Length = 177788

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atgaacttcagctacaactc 104
             ||||||||||||||||||||
Sbjct: 76116 atgaacttcagctacaactc 76097
to top
>ref|XM_978942.1| PREDICTED: Mus musculus RIKEN cDNA 9130024F11 gene (9130024F11Rik),
           mRNA
          Length = 2878

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  atgaacttcagctacaactc 104
           ||||||||||||||||||||
Sbjct: 673 atgaacttcagctacaactc 654
to top
>ref|XM_993812.1| PREDICTED: Mus musculus RIKEN cDNA 9130024F11 gene (9130024F11Rik),
           mRNA
          Length = 3565

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  atgaacttcagctacaactc 104
           ||||||||||||||||||||
Sbjct: 673 atgaacttcagctacaactc 654
to top
>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence
          Length = 197144

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gcagtatctgagttacatagggcc 218
             ||||||||||| ||||||||||||
Sbjct: 70617 gcagtatctgatttacatagggcc 70640
to top
>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gcagtatctgagttacatagggcc 218
             ||||||||||| ||||||||||||
Sbjct: 80538 gcagtatctgatttacatagggcc 80561
to top
>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1
              Contains a pseudogene similar to part of membrane guanylyl
              cyclase, a ribosomal protein S11 (RPS11) pseudogene, a
              novel gene and a CpG island, complete sequence
          Length = 176932

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gggaagtggagctgggagag 37
              ||||||||||||||||||||
Sbjct: 145364 gggaagtggagctgggagag 145345
to top
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     cgagcgccttgttgatgaacttca 94
              ||||||||||||| ||||||||||
Sbjct: 183874 cgagcgccttgttcatgaacttca 183897
to top
>gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosome 6, complete sequence
          Length = 209064

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aggaagaagggaagtggagc 29
              ||||||||||||||||||||
Sbjct: 106344 aggaagaagggaagtggagc 106325



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aggaagaagggaagtggagc 29
             ||||||||||||||||||||
Sbjct: 45306 aggaagaagggaagtggagc 45287
to top
>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence
          Length = 159942

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    gcagtatctgagttacatagggcc 218
              ||||||||||| ||||||||||||
Sbjct: 100185 gcagtatctgatttacatagggcc 100208
to top
>gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, complete sequence
          Length = 142093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gcagtatctgagttacatagggcc 218
             ||||||||||| ||||||||||||
Sbjct: 35406 gcagtatctgatttacatagggcc 35429
to top
>gb|AC079140.6| Homo sapiens BAC clone RP11-478C6 from 4, complete sequence
          Length = 156265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    cttgttgatgaacttcagctacaa 101
             |||||||| |||||||||||||||
Sbjct: 28132 cttgttgaagaacttcagctacaa 28109
to top
>gb|BC105170.1| Bos taurus cDNA clone IMAGE:30957709
          Length = 2225

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   aggaagaagggaagtggagc 29
            ||||||||||||||||||||
Sbjct: 1506 aggaagaagggaagtggagc 1525
to top
>dbj|AK020268.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130024F11 product:hypothetical protein,
            full insert sequence
          Length = 2767

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   atgaacttcagctacaactc 104
            ||||||||||||||||||||
Sbjct: 2201 atgaacttcagctacaactc 2220
to top
>dbj|AK046737.1| Mus musculus adult male cortex cDNA, RIKEN full-length enriched
            library, clone:B530033F01 product:hypothetical protein,
            full insert sequence
          Length = 2154

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   atgaacttcagctacaactc 104
            ||||||||||||||||||||
Sbjct: 1483 atgaacttcagctacaactc 1502
to top
>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162063

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    gggaagtggagctgggagag 37
             ||||||||||||||||||||
Sbjct: 84861 gggaagtggagctgggagag 84842
to top
>gb|BC012364.1| Homo sapiens, Similar to likely ortholog of yeast ARV1, clone
           IMAGE:4576306, mRNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 195 gcagtatctgagttacatagggcc 218
           ||||||||||| ||||||||||||
Sbjct: 738 gcagtatctgatttacatagggcc 761
to top
>gb|AC099522.3| Homo sapiens chromosome 5 clone RP11-79P5, complete sequence
          Length = 173073

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gcagtatctgagttacatagggcc 218
             ||||||||||| ||||||||||||
Sbjct: 58158 gcagtatctgatttacatagggcc 58181
to top
>dbj|AP000842.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-680F20riken,
             complete sequence
          Length = 179848

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   gcagtatctgagttacatagggcc 218
             ||||||||||| ||||||||||||
Sbjct: 36056 gcagtatctgatttacatagggcc 36033
to top
>gb|U36859.1|HIV1U36859 Human immunodeficiency virus type 1 envelope glycoprotein (env)
           pseudogene, complete cds
          Length = 2577

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 ctattgctgctacatcaaga 176
           ||||||||||||||||||||
Sbjct: 568 ctattgctgctacatcaaga 549
to top
>gb|AC174446.2| Mus musculus BAC clone RP23-356N23 from chromosome 6, complete sequence
          Length = 193034

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aggaagaagggaagtggagc 29
             ||||||||||||||||||||
Sbjct: 42819 aggaagaagggaagtggagc 42838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,281,176
Number of Sequences: 3902068
Number of extensions: 3281176
Number of successful extensions: 66527
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66377
Number of HSP's gapped (non-prelim): 150
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top