| Clone Name | baal33n14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full insert sequence Length = 1133 Score = 672 bits (339), Expect = 0.0 Identities = 518/577 (89%), Gaps = 3/577 (0%) Strand = Plus / Plus Query: 20 ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79 |||| |||||||||| | | ||||||| || |||||||||||||||||||| ||||||| Sbjct: 24 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 83 Query: 80 tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136 |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 84 ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 143 Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196 | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| ||||||||| Sbjct: 144 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 203 Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256 ||||||||||||||||| |||| || || || ||||||||||||||||||||||| |||| Sbjct: 204 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 263 Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| | Sbjct: 264 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 323 Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376 |||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||| Sbjct: 324 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 383 Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436 ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || | Sbjct: 384 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 443 Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496 | |||| || ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 444 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 503 Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556 |||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 504 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 563 Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593 |||||||||||||||||||||| |||||||||||||| Sbjct: 564 ttgcattcaacttggcaggatttattcttgcagctgg 600
>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full insert sequence Length = 1243 Score = 672 bits (339), Expect = 0.0 Identities = 518/577 (89%), Gaps = 3/577 (0%) Strand = Plus / Plus Query: 20 ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79 |||| |||||||||| | | ||||||| || |||||||||||||||||||| ||||||| Sbjct: 42 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 101 Query: 80 tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136 |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 102 ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 161 Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196 | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| ||||||||| Sbjct: 162 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 221 Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256 ||||||||||||||||| |||| || || || ||||||||||||||||||||||| |||| Sbjct: 222 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 281 Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| | Sbjct: 282 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 341 Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376 |||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||| Sbjct: 342 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 401 Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436 ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || | Sbjct: 402 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 461 Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496 | |||| || ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 462 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 521 Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556 |||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 522 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 581 Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593 |||||||||||||||||||||| |||||||||||||| Sbjct: 582 ttgcattcaacttggcaggatttattcttgcagctgg 618
>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full insert sequence Length = 1133 Score = 672 bits (339), Expect = 0.0 Identities = 518/577 (89%), Gaps = 3/577 (0%) Strand = Plus / Plus Query: 20 ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79 |||| |||||||||| | | ||||||| || |||||||||||||||||||| ||||||| Sbjct: 24 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 83 Query: 80 tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136 |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 84 ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 143 Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196 | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| ||||||||| Sbjct: 144 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 203 Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256 ||||||||||||||||| |||| || || || ||||||||||||||||||||||| |||| Sbjct: 204 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 263 Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| | Sbjct: 264 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 323 Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376 |||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||| Sbjct: 324 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 383 Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436 ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || | Sbjct: 384 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 443 Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496 | |||| || ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 444 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 503 Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556 |||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 504 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 563 Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593 |||||||||||||||||||||| |||||||||||||| Sbjct: 564 ttgcattcaacttggcaggatttattcttgcagctgg 600
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence Length = 1252 Score = 416 bits (210), Expect = e-113 Identities = 465/550 (84%) Strand = Plus / Plus Query: 41 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 100 ||||||| |||| |||||| ||||||||||| ||||| ||||||| |||| || |||| Sbjct: 51 cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 110 Query: 101 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 160 ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| | Sbjct: 111 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 170 Query: 161 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 220 ||||||| |||||||| |||| ||| ||||| |||| || ||||||||||| |||| | Sbjct: 171 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 230 Query: 221 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 280 | ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || | Sbjct: 231 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 290 Query: 281 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 340 |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 291 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 350 Query: 341 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 400 || | || ||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 351 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 410 Query: 401 aagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctat 460 |||| ||||||||||||| ||||||||||| | || | | || ||||| | |||| Sbjct: 411 aagtgttggcaagcatgctctatcttgacagcattgataattccaaaaagataatgctat 470 Query: 461 acatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgctaa 520 |||| || || ||||||||||||||||| || || ||||| |||||||||||||||||| Sbjct: 471 acattaatggaccaggaggagatcttactccgtgtatggcactatatgataccatgctaa 530 Query: 521 gcctaaagagtccaattggtacccattgcctgggctttgcattcaacttggcaggattca 580 | ||||| ||||| ||||| || || ||| ||||||||||||||||| |||||||||||| Sbjct: 531 gtctaaaaagtcctattggcactcactgcttgggctttgcattcaacctggcaggattca 590 Query: 581 ttcttgcagc 590 | |||||||| Sbjct: 591 tccttgcagc 600
>gb|AY105157.1| Zea mays PCO115092 mRNA sequence Length = 481 Score = 331 bits (167), Expect = 2e-87 Identities = 335/391 (85%) Strand = Plus / Plus Query: 41 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 100 ||||||| |||| |||||| ||||||||||| ||||| ||||||| |||| || |||| Sbjct: 54 cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 113 Query: 101 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 160 ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| | Sbjct: 114 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 173 Query: 161 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 220 ||||||| |||||||| |||| ||| ||||| |||| || ||||||||||| |||| | Sbjct: 174 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 233 Query: 221 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 280 | ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || | Sbjct: 234 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 293 Query: 281 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 340 |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 294 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 353 Query: 341 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 400 || | || ||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 354 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 413 Query: 401 aagtactggcaagcatgctgtatcttgacag 431 |||| ||||||||||||| ||||||||||| Sbjct: 414 aagtgttggcaagcatgctctatcttgacag 444
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 484 cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 543 ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 1951074 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 1951133 Query: 544 cattgcctgggctttgcattcaacttggcaggattcattcttgcagctgg 593 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1951134 cattgcctgggctttgcattcaacttggcaggatttattcttgcagctgg 1951183 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 229 tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 288 ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 1949403 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 1949462 Query: 289 ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 342 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 1949463 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 1949516 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 346 tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 405 ||||| ||||| ||||||||||||||||||| ||| |||||||| || |||||||||||| Sbjct: 1949630 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 1949689 Query: 406 ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 465 |||| |||||| ||||||||||||| || || |||| || ||||||||||||||||| Sbjct: 1949690 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 1949749 Query: 466 aacggtccaggaggagat 483 || ||||||||||||||| Sbjct: 1949750 aatggtccaggaggagat 1949767 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 151 ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 210 |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 1948856 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 1948915 Query: 211 agggtctc 218 ||| |||| Sbjct: 1948916 aggatctc 1948923 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 102 cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 143 |||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 1948699 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 1948740 Score = 60.0 bits (30), Expect = 9e-06 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 20 ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccg---cg 76 |||| |||||||||| | | ||||||| || |||||||||||||||||||| || || Sbjct: 1948492 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 1948551 Query: 77 ccgtcgccagctcgccctcctctctcag 104 ||| ||||||| ||||||| |||||||| Sbjct: 1948552 ccgccgccagcgcgccctcatctctcag 1948579
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 484 cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 543 ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 79854 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 79913 Query: 544 cattgcctgggctttgcattcaacttggcaggattcattcttgcagctgg 593 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 79914 cattgcctgggctttgcattcaacttggcaggatttattcttgcagctgg 79963 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 229 tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 288 ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 78183 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 78242 Query: 289 ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 342 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 78243 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 78296 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 346 tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 405 ||||| ||||| ||||||||||||||||||| ||| |||||||| || |||||||||||| Sbjct: 78410 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 78469 Query: 406 ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 465 |||| |||||| ||||||||||||| || || |||| || ||||||||||||||||| Sbjct: 78470 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 78529 Query: 466 aacggtccaggaggagat 483 || ||||||||||||||| Sbjct: 78530 aatggtccaggaggagat 78547 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 151 ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 210 |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 77636 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 77695 Query: 211 agggtctc 218 ||| |||| Sbjct: 77696 aggatctc 77703 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 102 cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 143 |||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 77479 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 77520 Score = 60.0 bits (30), Expect = 9e-06 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 20 ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccg---cg 76 |||| |||||||||| | | ||||||| || |||||||||||||||||||| || || Sbjct: 77272 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 77331 Query: 77 ccgtcgccagctcgccctcctctctcag 104 ||| ||||||| ||||||| |||||||| Sbjct: 77332 ccgccgccagcgcgccctcatctctcag 77359
>gb|AY105451.1| Zea mays PCO122767 mRNA sequence Length = 709 Score = 141 bits (71), Expect = 3e-30 Identities = 170/203 (83%) Strand = Plus / Plus Query: 388 gaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaag 447 |||||||| |||||||| ||||||||||||| ||||||||||| | || | | || Sbjct: 11 gaattcagcaaccaagtgttggcaagcatgctctatcttgacagcattgataattccaaa 70 Query: 448 aagattcttctatacatcaacggtccaggaggagatcttacaccatgcatggcgttatat 507 ||||| | |||||||| || || ||||||||||||||||| || || ||||| ||||| Sbjct: 71 aagataatgctatacattaatggaccaggaggagatcttactccgtgtatggcactatat 130 Query: 508 gataccatgctaagcctaaagagtccaattggtacccattgcctgggctttgcattcaac 567 |||||||||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||| Sbjct: 131 gataccatgctaagtctaaaaagtcctattggcactcactgcttgggctttgcattcaac 190 Query: 568 ttggcaggattcattcttgcagc 590 ||||||||||||| |||||||| Sbjct: 191 ctggcaggattcatccttgcagc 213
>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence Length = 127132 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 295 agaacacctggtgaaggaacctggcagtggcttgacatatggaatgc 341 |||||||||||||||||||| ||||| ||| |||| |||||||||| Sbjct: 37162 agaacacctggtgaaggaacttggcaatgggttgatttatggaatgc 37116 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 382 gatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgt 434 ||||||||||| || || ||| || |||||| ||||||||||||||||||| Sbjct: 36892 gatgaagaattaagcaatcaaatattggcaactttgctgtatcttgacagtgt 36840
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 cgctgtgccggacggcgcccgcc 51 ||||||||||||||||||||||| Sbjct: 384387 cgctgtgccggacggcgcccgcc 384409
>ref|NM_193865.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 225 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccagctcgccctcctctc 100 |||||||||||||||||||| Sbjct: 192 cgccagctcgccctcctctc 173
>emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A4 on chromosome 6q12-13 Contains part of a novel gene, part of the gene for a novel EGF-like domain containing protein and a novel gene, complete sequence Length = 106273 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 aaagaagattcttctataca 463 |||||||||||||||||||| Sbjct: 93371 aaagaagattcttctataca 93390
>gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosome 3, complete sequence Length = 212795 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 cccattgcctgggctttgca 561 |||||||||||||||||||| Sbjct: 116167 cccattgcctgggctttgca 116148
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 cgcgccgtcgccagctcgccctcc 96 ||||||||||||||||| |||||| Sbjct: 79820 cgcgccgtcgccagctccccctcc 79797
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 cgcgccgtcgccagctcgccctcc 96 ||||||||||||||||| |||||| Sbjct: 81638 cgcgccgtcgccagctccccctcc 81615
>gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome 3, complete sequence Length = 206717 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 cccattgcctgggctttgca 561 |||||||||||||||||||| Sbjct: 206453 cccattgcctgggctttgca 206472
>emb|AJ252202.1|DME252202 Drosophila melanogaster D-COQ7 gene for putative COQ7 isologue, exons 1-3 Length = 2586 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagggctaccagggcacgca 256 |||||||||||||||||||| Sbjct: 2457 gagggctaccagggcacgca 2438
>emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10, complete sequence Length = 159807 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 agtggcttgacatatggaat 339 |||||||||||||||||||| Sbjct: 82648 agtggcttgacatatggaat 82629
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cgcgccgtcgccagctcgcc 92 |||||||||||||||||||| Sbjct: 1441102 cgcgccgtcgccagctcgcc 1441083
>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 191590 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagggctaccagggcacgca 256 |||||||||||||||||||| Sbjct: 87446 gagggctaccagggcacgca 87427
>ref|NM_132121.2| Drosophila melanogaster shifted CG3135-RA (shf), mRNA Length = 1803 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gagggctaccagggcacgca 256 |||||||||||||||||||| Sbjct: 1263 gagggctaccagggcacgca 1282
>gb|AY051622.1| Drosophila melanogaster GH27042 full length cDNA Length = 1802 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gagggctaccagggcacgca 256 |||||||||||||||||||| Sbjct: 1263 gagggctaccagggcacgca 1282
>tpg|BK000323.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) transposon Rim2-M44, complete sequence Length = 2086 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccagctcgccctcctctc 100 |||||||||||||||||||| Sbjct: 1490 cgccagctcgccctcctctc 1471
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caactcctcctgcttccacc 70 |||||||||||||||||||| Sbjct: 419440 caactcctcctgcttccacc 419459
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgccagctcgccctcctctc 100 |||||||||||||||||||| Sbjct: 15430557 cgccagctcgccctcctctc 15430576
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence Length = 164706 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gcattcaacttggcaggatt 578 |||||||||||||||||||| Sbjct: 159795 gcattcaacttggcaggatt 159814
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caactcctcctgcttccacc 70 |||||||||||||||||||| Sbjct: 15681 caactcctcctgcttccacc 15700
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgccagctcgccctcctctc 100 |||||||||||||||||||| Sbjct: 108098 cgccagctcgccctcctctc 108117
>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200540 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 acttggcaggattcattctt 585 |||||||||||||||||||| Sbjct: 122338 acttggcaggattcattctt 122357
>gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 of 74 of the complete sequence Length = 299943 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagggctaccagggcacgca 256 |||||||||||||||||||| Sbjct: 233437 gagggctaccagggcacgca 233418
>emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chromosome X, complete sequence Length = 123180 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caactcctcctgcttccacc 70 |||||||||||||||||||| Sbjct: 39066 caactcctcctgcttccacc 39085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,178,080 Number of Sequences: 3902068 Number of extensions: 4178080 Number of successful extensions: 80808 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80575 Number of HSP's gapped (non-prelim): 230 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)