ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal33n14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 672 0.0
2dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 672 0.0
3dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 672 0.0
4gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence 416 e-113
5gb|AY105157.1| Zea mays PCO115092 mRNA sequence 331 2e-87
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
7dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
8gb|AY105451.1| Zea mays PCO122767 mRNA sequence 141 3e-30
9gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete s... 54 5e-04
10gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 46 0.13
11ref|NM_193865.1| Oryza sativa (japonica cultivar-group), predic... 40 8.1
12emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A... 40 8.1
13gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosom... 40 8.1
14emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 40 8.1
15emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for bi... 40 8.1
16gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome... 40 8.1
17emb|AJ252202.1|DME252202 Drosophila melanogaster D-COQ7 gene for... 40 8.1
18emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10,... 40 8.1
19gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.1
20gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell... 40 8.1
21ref|NM_132121.2| Drosophila melanogaster shifted CG3135-RA (shf)... 40 8.1
22gb|AY051622.1| Drosophila melanogaster GH27042 full length cDNA 40 8.1
23tpg|BK000323.1| TPA: TPA_exp: Oryza sativa (indica cultivar-grou... 40 8.1
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
26gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complet... 40 8.1
27dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
28dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
29emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-9... 40 8.1
30gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 ... 40 8.1
31emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chro... 40 8.1

>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full
           insert sequence
          Length = 1133

 Score =  672 bits (339), Expect = 0.0
 Identities = 518/577 (89%), Gaps = 3/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79
           |||| |||||||||| |  | ||||||| || |||||||||||||||||||| |||||||
Sbjct: 24  ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 83

                                                                       
Query: 80  tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136
            ||||   ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 84  ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 143

                                                                       
Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196
           | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 144 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 203

                                                                       
Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256
           ||||||||||||||||| |||| || || || ||||||||||||||||||||||| ||||
Sbjct: 204 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 263

                                                                       
Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316
           |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 264 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 323

                                                                       
Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376
           |||| |||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 324 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 383

                                                                       
Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436
            ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || |
Sbjct: 384 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 443

                                                                       
Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496
           |  |||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 444 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 503

                                                                       
Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556
           |||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 504 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 563

                                                
Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593
           |||||||||||||||||||||| ||||||||||||||
Sbjct: 564 ttgcattcaacttggcaggatttattcttgcagctgg 600



to top

>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full
           insert sequence
          Length = 1243

 Score =  672 bits (339), Expect = 0.0
 Identities = 518/577 (89%), Gaps = 3/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79
           |||| |||||||||| |  | ||||||| || |||||||||||||||||||| |||||||
Sbjct: 42  ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 101

                                                                       
Query: 80  tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136
            ||||   ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 102 ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 161

                                                                       
Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196
           | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 162 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 221

                                                                       
Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256
           ||||||||||||||||| |||| || || || ||||||||||||||||||||||| ||||
Sbjct: 222 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 281

                                                                       
Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316
           |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 282 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 341

                                                                       
Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376
           |||| |||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 342 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 401

                                                                       
Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436
            ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || |
Sbjct: 402 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 461

                                                                       
Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496
           |  |||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 462 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 521

                                                                       
Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556
           |||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 522 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 581

                                                
Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593
           |||||||||||||||||||||| ||||||||||||||
Sbjct: 582 ttgcattcaacttggcaggatttattcttgcagctgg 618



to top

>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full
           insert sequence
          Length = 1133

 Score =  672 bits (339), Expect = 0.0
 Identities = 518/577 (89%), Gaps = 3/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccgcgccg 79
           |||| |||||||||| |  | ||||||| || |||||||||||||||||||| |||||||
Sbjct: 24  ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 83

                                                                       
Query: 80  tcgcc---agctcgccctcctctctcagcgtgggcaccaaggtcttcgtcgggctgaagg 136
            ||||   ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 84  ccgccgccagcgcgccctcatctctcagcgtgggcaccaaggtcttcgtcgggttgaagg 143

                                                                       
Query: 137 cgcagacgaggctcggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctaca 196
           | ||||| | ||| |||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 144 cccagaccaagctaggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctaca 203

                                                                       
Query: 197 ccgccgtcaaccggagggtctcccttgggttgtcaaacaagagggctaccagggcacgca 256
           ||||||||||||||||| |||| || || || ||||||||||||||||||||||| ||||
Sbjct: 204 ccgccgtcaaccggaggatctctctgggattatcaaacaagagggctaccagggcgcgca 263

                                                                       
Query: 257 tttcaatgatgcctgtcggcacaccacgggtaccttacagaacacctggtgaaggaacct 316
           |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 264 tttcaatgatgcctgttggtacaccacgggtgccttacagaacacctggtgaaggaactt 323

                                                                       
Query: 317 ggcagtggcttgacatatggaatgctttatatcgtgaacggattatcttcattggggaca 376
           |||| |||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 324 ggcaatggcttgatatatggaatgctctatatcgcgaacgaattatcttcattggggaca 383

                                                                       
Query: 377 atattgatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcg 436
            ||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| || |
Sbjct: 384 gtatagatgaagagtttagtaaccaagtattggcgagcatgttgtatcttgacagcgttg 443

                                                                       
Query: 437 acgacacaaagaagattcttctatacatcaacggtccaggaggagatcttacaccatgca 496
           |  |||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 444 ataacactaaaaagattcttctatacattaatggtccaggaggagatcttacaccatgca 503

                                                                       
Query: 497 tggcgttatatgataccatgctaagcctaaagagtccaattggtacccattgcctgggct 556
           |||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 504 tggcattatatgatacaatgctaagcctaaaaagtcctattggtactcattgcctgggct 563

                                                
Query: 557 ttgcattcaacttggcaggattcattcttgcagctgg 593
           |||||||||||||||||||||| ||||||||||||||
Sbjct: 564 ttgcattcaacttggcaggatttattcttgcagctgg 600



to top

>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence
          Length = 1252

 Score =  416 bits (210), Expect = e-113
 Identities = 465/550 (84%)
 Strand = Plus / Plus

                                                                       
Query: 41  cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 100
           ||||||| |||| |||||| ||||||||||| |||||   ||||||| |||| || ||||
Sbjct: 51  cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 110

                                                                       
Query: 101 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 160
           ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| |
Sbjct: 111 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 170

                                                                       
Query: 161 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 220
           ||||||| |||||||| |||| |||  ||||| |||| || |||||||||||  |||| |
Sbjct: 171 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 230

                                                                       
Query: 221 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 280
           |  ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || |
Sbjct: 231 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 290

                                                                       
Query: 281 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 340
           |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 291 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 350

                                                                       
Query: 341 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 400
           || | || ||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 351 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 410

                                                                       
Query: 401 aagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctat 460
           ||||  ||||||||||||| |||||||||||  | ||  |  | || |||||  | ||||
Sbjct: 411 aagtgttggcaagcatgctctatcttgacagcattgataattccaaaaagataatgctat 470

                                                                       
Query: 461 acatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgctaa 520
           |||| || || ||||||||||||||||| || || |||||  ||||||||||||||||||
Sbjct: 471 acattaatggaccaggaggagatcttactccgtgtatggcactatatgataccatgctaa 530

                                                                       
Query: 521 gcctaaagagtccaattggtacccattgcctgggctttgcattcaacttggcaggattca 580
           | ||||| ||||| ||||| || || ||| ||||||||||||||||| ||||||||||||
Sbjct: 531 gtctaaaaagtcctattggcactcactgcttgggctttgcattcaacctggcaggattca 590

                     
Query: 581 ttcttgcagc 590
           | ||||||||
Sbjct: 591 tccttgcagc 600



to top

>gb|AY105157.1| Zea mays PCO115092 mRNA sequence
          Length = 481

 Score =  331 bits (167), Expect = 2e-87
 Identities = 335/391 (85%)
 Strand = Plus / Plus

                                                                       
Query: 41  cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 100
           ||||||| |||| |||||| ||||||||||| |||||   ||||||| |||| || ||||
Sbjct: 54  cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 113

                                                                       
Query: 101 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 160
           ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| |
Sbjct: 114 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 173

                                                                       
Query: 161 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 220
           ||||||| |||||||| |||| |||  ||||| |||| || |||||||||||  |||| |
Sbjct: 174 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 233

                                                                       
Query: 221 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 280
           |  ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || |
Sbjct: 234 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 293

                                                                       
Query: 281 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 340
           |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 294 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 353

                                                                       
Query: 341 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 400
           || | || ||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 354 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 413

                                          
Query: 401 aagtactggcaagcatgctgtatcttgacag 431
           ||||  ||||||||||||| |||||||||||
Sbjct: 414 aagtgttggcaagcatgctctatcttgacag 444



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  170 bits (86), Expect = 3e-39
 Identities = 104/110 (94%)
 Strand = Plus / Plus

                                                                           
Query: 484     cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 543
               ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| 
Sbjct: 1951074 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 1951133

                                                                 
Query: 544     cattgcctgggctttgcattcaacttggcaggattcattcttgcagctgg 593
               ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1951134 cattgcctgggctttgcattcaacttggcaggatttattcttgcagctgg 1951183



 Score =  170 bits (86), Expect = 3e-39
 Identities = 107/114 (93%)
 Strand = Plus / Plus

                                                                           
Query: 229     tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 288
               ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 1949403 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 1949462

                                                                     
Query: 289     ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 342
               |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 1949463 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 1949516



 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                           
Query: 346     tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 405
               ||||| ||||| ||||||||||||||||||| ||| |||||||| || ||||||||||||
Sbjct: 1949630 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 1949689

                                                                           
Query: 406     ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 465
                |||| |||||| ||||||||||||| || ||  |||| || ||||||||||||||||| 
Sbjct: 1949690 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 1949749

                                 
Query: 466     aacggtccaggaggagat 483
               || |||||||||||||||
Sbjct: 1949750 aatggtccaggaggagat 1949767



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                           
Query: 151     ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 210
               |||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 1948856 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 1948915

                       
Query: 211     agggtctc 218
               ||| ||||
Sbjct: 1948916 aggatctc 1948923



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                         
Query: 102     cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 143
               |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1948699 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 1948740



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 74/88 (84%), Gaps = 3/88 (3%)
 Strand = Plus / Plus

                                                                           
Query: 20      ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccg---cg 76
               |||| |||||||||| |  | ||||||| || |||||||||||||||||||| ||   ||
Sbjct: 1948492 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 1948551

                                           
Query: 77      ccgtcgccagctcgccctcctctctcag 104
               ||| ||||||| ||||||| ||||||||
Sbjct: 1948552 ccgccgccagcgcgccctcatctctcag 1948579



to top

>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score =  170 bits (86), Expect = 3e-39
 Identities = 104/110 (94%)
 Strand = Plus / Plus

                                                                         
Query: 484   cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 543
             ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| 
Sbjct: 79854 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 79913

                                                               
Query: 544   cattgcctgggctttgcattcaacttggcaggattcattcttgcagctgg 593
             ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 79914 cattgcctgggctttgcattcaacttggcaggatttattcttgcagctgg 79963



 Score =  170 bits (86), Expect = 3e-39
 Identities = 107/114 (93%)
 Strand = Plus / Plus

                                                                         
Query: 229   tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 288
             ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 78183 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 78242

                                                                   
Query: 289   ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 342
             |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 78243 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 78296



 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                         
Query: 346   tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 405
             ||||| ||||| ||||||||||||||||||| ||| |||||||| || ||||||||||||
Sbjct: 78410 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 78469

                                                                         
Query: 406   ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 465
              |||| |||||| ||||||||||||| || ||  |||| || ||||||||||||||||| 
Sbjct: 78470 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 78529

                               
Query: 466   aacggtccaggaggagat 483
             || |||||||||||||||
Sbjct: 78530 aatggtccaggaggagat 78547



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                         
Query: 151   ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 210
             |||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 77636 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 77695

                     
Query: 211   agggtctc 218
             ||| ||||
Sbjct: 77696 aggatctc 77703



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 102   cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 143
             |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 77479 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 77520



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 74/88 (84%), Gaps = 3/88 (3%)
 Strand = Plus / Plus

                                                                         
Query: 20    ctccaatggcgctgtgccggacggcgcccgccaactcctcctgcttccacccccg---cg 76
             |||| |||||||||| |  | ||||||| || |||||||||||||||||||| ||   ||
Sbjct: 77272 ctccgatggcgctgtccgcggcggcgccggcgaactcctcctgcttccacccgcgcgccg 77331

                                         
Query: 77    ccgtcgccagctcgccctcctctctcag 104
             ||| ||||||| ||||||| ||||||||
Sbjct: 77332 ccgccgccagcgcgccctcatctctcag 77359



to top

>gb|AY105451.1| Zea mays PCO122767 mRNA sequence
          Length = 709

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Plus

                                                                       
Query: 388 gaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaag 447
           |||||||| ||||||||  ||||||||||||| |||||||||||  | ||  |  | || 
Sbjct: 11  gaattcagcaaccaagtgttggcaagcatgctctatcttgacagcattgataattccaaa 70

                                                                       
Query: 448 aagattcttctatacatcaacggtccaggaggagatcttacaccatgcatggcgttatat 507
           |||||  | |||||||| || || ||||||||||||||||| || || |||||  |||||
Sbjct: 71  aagataatgctatacattaatggaccaggaggagatcttactccgtgtatggcactatat 130

                                                                       
Query: 508 gataccatgctaagcctaaagagtccaattggtacccattgcctgggctttgcattcaac 567
           |||||||||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||
Sbjct: 131 gataccatgctaagtctaaaaagtcctattggcactcactgcttgggctttgcattcaac 190

                                  
Query: 568 ttggcaggattcattcttgcagc 590
            ||||||||||||| ||||||||
Sbjct: 191 ctggcaggattcatccttgcagc 213



to top

>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence
          Length = 127132

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 295   agaacacctggtgaaggaacctggcagtggcttgacatatggaatgc 341
             |||||||||||||||||||| ||||| ||| ||||  ||||||||||
Sbjct: 37162 agaacacctggtgaaggaacttggcaatgggttgatttatggaatgc 37116



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 382   gatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgt 434
             ||||||||||| || || ||| || ||||||   |||||||||||||||||||
Sbjct: 36892 gatgaagaattaagcaatcaaatattggcaactttgctgtatcttgacagtgt 36840



to top

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 29     cgctgtgccggacggcgcccgcc 51
              |||||||||||||||||||||||
Sbjct: 384387 cgctgtgccggacggcgcccgcc 384409



to top

>ref|NM_193865.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 225

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cgccagctcgccctcctctc 100
           ||||||||||||||||||||
Sbjct: 192 cgccagctcgccctcctctc 173



to top

>emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A4 on chromosome 6q12-13 Contains
             part of a novel gene, part of the gene for a novel
             EGF-like domain containing protein and a novel gene,
             complete sequence
          Length = 106273

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   aaagaagattcttctataca 463
             ||||||||||||||||||||
Sbjct: 93371 aaagaagattcttctataca 93390



to top

>gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosome 3, complete sequence
          Length = 212795

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 542    cccattgcctgggctttgca 561
              ||||||||||||||||||||
Sbjct: 116167 cccattgcctgggctttgca 116148



to top

>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 73    cgcgccgtcgccagctcgccctcc 96
             ||||||||||||||||| ||||||
Sbjct: 79820 cgcgccgtcgccagctccccctcc 79797



to top

>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 73    cgcgccgtcgccagctcgccctcc 96
             ||||||||||||||||| ||||||
Sbjct: 81638 cgcgccgtcgccagctccccctcc 81615



to top

>gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome 3, complete sequence
          Length = 206717

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 542    cccattgcctgggctttgca 561
              ||||||||||||||||||||
Sbjct: 206453 cccattgcctgggctttgca 206472



to top

>emb|AJ252202.1|DME252202 Drosophila melanogaster D-COQ7 gene for putative COQ7 isologue, exons
            1-3
          Length = 2586

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gagggctaccagggcacgca 256
            ||||||||||||||||||||
Sbjct: 2457 gagggctaccagggcacgca 2438



to top

>emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10, complete sequence
          Length = 159807

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   agtggcttgacatatggaat 339
             ||||||||||||||||||||
Sbjct: 82648 agtggcttgacatatggaat 82629



to top

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      cgcgccgtcgccagctcgcc 92
               ||||||||||||||||||||
Sbjct: 1441102 cgcgccgtcgccagctcgcc 1441083



to top

>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 191590

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gagggctaccagggcacgca 256
             ||||||||||||||||||||
Sbjct: 87446 gagggctaccagggcacgca 87427



to top

>ref|NM_132121.2| Drosophila melanogaster shifted CG3135-RA (shf), mRNA
          Length = 1803

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  gagggctaccagggcacgca 256
            ||||||||||||||||||||
Sbjct: 1263 gagggctaccagggcacgca 1282



to top

>gb|AY051622.1| Drosophila melanogaster GH27042 full length cDNA
          Length = 1802

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  gagggctaccagggcacgca 256
            ||||||||||||||||||||
Sbjct: 1263 gagggctaccagggcacgca 1282



to top

>tpg|BK000323.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) transposon
            Rim2-M44, complete sequence
          Length = 2086

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   cgccagctcgccctcctctc 100
            ||||||||||||||||||||
Sbjct: 1490 cgccagctcgccctcctctc 1471



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     caactcctcctgcttccacc 70
              ||||||||||||||||||||
Sbjct: 419440 caactcctcctgcttccacc 419459



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 81       cgccagctcgccctcctctc 100
                ||||||||||||||||||||
Sbjct: 15430557 cgccagctcgccctcctctc 15430576



to top

>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence
          Length = 164706

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 559    gcattcaacttggcaggatt 578
              ||||||||||||||||||||
Sbjct: 159795 gcattcaacttggcaggatt 159814



to top

>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    caactcctcctgcttccacc 70
             ||||||||||||||||||||
Sbjct: 15681 caactcctcctgcttccacc 15700



to top

>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045D11
          Length = 142320

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     cgccagctcgccctcctctc 100
              ||||||||||||||||||||
Sbjct: 108098 cgccagctcgccctcctctc 108117



to top

>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200540

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    acttggcaggattcattctt 585
              ||||||||||||||||||||
Sbjct: 122338 acttggcaggattcattctt 122357



to top

>gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 of 74 of the complete
              sequence
          Length = 299943

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gagggctaccagggcacgca 256
              ||||||||||||||||||||
Sbjct: 233437 gagggctaccagggcacgca 233418



to top

>emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chromosome X, complete
             sequence
          Length = 123180

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    caactcctcctgcttccacc 70
             ||||||||||||||||||||
Sbjct: 39066 caactcctcctgcttccacc 39085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,178,080
Number of Sequences: 3902068
Number of extensions: 4178080
Number of successful extensions: 80808
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80575
Number of HSP's gapped (non-prelim): 230
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top