>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 270    acataatctacacattgtatta 291
              ||||||||||||||||||||||
Sbjct: 144129 acataatctacacattgtatta 144108

>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 270    acataatctacacattgtatta 291
              ||||||||||||||||||||||
Sbjct: 112894 acataatctacacattgtatta 112873

>ref|XM_470513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3810

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 4    gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
            |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 2683 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 2731

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 4        gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
                |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 36050762 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 36050810

>gb|AF512737.1| Loxocemus bicolor 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence; mitochondrial genes for mitochondrial
            products
          Length = 1844

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 246  ttttttggtctgttgatttctagta 270
            |||||||||||||||||| ||||||
Sbjct: 1217 ttttttggtctgttgattgctagta 1193

>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 4      gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
              |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 112273 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 112321

>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence
          Length = 170245

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ccttggctgagatgaaaaagg 46
              |||||||||||||||||||||
Sbjct: 137963 ccttggctgagatgaaaaagg 137983

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 4        gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
                |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 36140836 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 36140884

>dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115B06, full
            insert sequence
          Length = 4301

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 4    gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
            |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 2920 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 2968

>dbj|AK073260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I18, full
           insert sequence
          Length = 1483

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 4   gcagtgagcaagtcaacctcatccttggctgagatgaaaaaggagaaaa 52
           |||||||| || ||||||||||| ||||| | |||||| || |||||||
Sbjct: 546 gcagtgagtaaatcaacctcatcattggcagcgatgaagaaagagaaaa 498

>gb|AC123597.9| Mus musculus chromosome 8, clone RP23-134A7, complete sequence
          Length = 172297

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     ggctgagatgaaaaaggaga 49
              ||||||||||||||||||||
Sbjct: 106050 ggctgagatgaaaaaggaga 106031

>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 18359 atgaaaaaggagaaaagtgg 18378

>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence
          Length = 188544

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    ttgtattacaatctacacat 349
              ||||||||||||||||||||
Sbjct: 106740 ttgtattacaatctacacat 106759

>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 18359 atgaaaaaggagaaaagtgg 18378

>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 18317 atgaaaaaggagaaaagtgg 18336

>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    tgttgatgaggccaacaatt 227
              ||||||||||||||||||||
Sbjct: 114561 tgttgatgaggccaacaatt 114580

>gb|BT011074.1| Drosophila melanogaster SD14261 full insert cDNA
          Length = 1487

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  ttttttggtctgttgatttc 265
            ||||||||||||||||||||
Sbjct: 1474 ttttttggtctgttgatttc 1455

>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 18356 atgaaaaaggagaaaagtgg 18375

>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
              complete sequence
          Length = 145980

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     atgaaaaaggagaaaagtgg 56
              ||||||||||||||||||||
Sbjct: 101730 atgaaaaaggagaaaagtgg 101749

>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
              complete sequence
          Length = 142814

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     atgaaaaaggagaaaagtgg 56
              ||||||||||||||||||||
Sbjct: 112356 atgaaaaaggagaaaagtgg 112337

>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   aaattttttggtctgttgat 262
             ||||||||||||||||||||
Sbjct: 34130 aaattttttggtctgttgat 34149

>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0075K12, complete sequence
          Length = 125936

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 16606 atgaaaaaggagaaaagtgg 16625

>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 91539 atgaaaaaggagaaaagtgg 91558

>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161735

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctgagatgaaaaaggagaaa 51
             ||||||||||||||||||||
Sbjct: 45552 ctgagatgaaaaaggagaaa 45571

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 11103701 atgaaaaaggagaaaagtgg 11103682



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      atgaaaaaggagaaaagtgg 56
               ||||||||||||||||||||
Sbjct: 9247609 atgaaaaaggagaaaagtgg 9247628



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      atgaaaaaggagaaaagtgg 56
               ||||||||||||||||||||
Sbjct: 9143704 atgaaaaaggagaaaagtgg 9143723

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 243      aaattttttggtctgttgat 262
                ||||||||||||||||||||
Sbjct: 17338149 aaattttttggtctgttgat 17338130



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 15768149 atgaaaaaggagaaaagtgg 15768168



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 10310214 atgaaaaaggagaaaagtgg 10310233

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 14377985 atgaaaaaggagaaaagtgg 14377966

>gb|AC073393.2|AC073393 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0076M18,
             complete sequence
          Length = 132647

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 63109 atgaaaaaggagaaaagtgg 63128

>dbj|AB207348.1| Hordeum vulgare DNA, trnC-rpoB intergenic region, strain:-
          Length = 1147

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 33  tgagatgaaaaaggagaaaagtgg 56
           ||||||||||||| ||||||||||
Sbjct: 223 tgagatgaaaaagaagaaaagtgg 246

>gb|AC011242.8| Homo sapiens BAC clone RP11-489K22 from 2, complete sequence
          Length = 186091

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    ctgagatgaaaaaggagaaaagtg 55
             |||||||| |||||||||||||||
Sbjct: 41788 ctgagatggaaaaggagaaaagtg 41765

>ref|XM_578775.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916
           (LOC503244), mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 29  tggctgagatgaaaaaggagaaaagtgg 56
           ||||| |||||||| |||||||||||||
Sbjct: 849 tggctcagatgaaacaggagaaaagtgg 822

>ref|XM_236967.3| PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916
           (LOC301278), mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 29  tggctgagatgaaaaaggagaaaagtgg 56
           ||||| |||||||| |||||||||||||
Sbjct: 567 tggctcagatgaaacaggagaaaagtgg 540

>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0022A24
          Length = 148347

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 99907 atgaaaaaggagaaaagtgg 99888

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 243      aaattttttggtctgttgat 262
                ||||||||||||||||||||
Sbjct: 17347189 aaattttttggtctgttgat 17347170



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 15776390 atgaaaaaggagaaaagtgg 15776409



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       atgaaaaaggagaaaagtgg 56
                ||||||||||||||||||||
Sbjct: 10316253 atgaaaaaggagaaaagtgg 10316272

>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atgaaaaaggagaaaagtgg 56
             ||||||||||||||||||||
Sbjct: 18291 atgaaaaaggagaaaagtgg 18310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,784,467
Number of Sequences: 3902068
Number of extensions: 3784467
Number of successful extensions: 79001
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78793
Number of HSP's gapped (non-prelim): 208
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)