ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal33m18 |
|---|---|
| Clone Library Name | barley_pub |
>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 33.5 bits (75), Expect = 0.54 Identities = 32/120 (26%), Positives = 46/120 (38%) Frame = +3 Query: 126 DRRKGGTGLESELWWI*TESGTRKGSEISMKASSSMAGDASGNTDPGQQGVRFSSMDQSC 305 D + GG+G ES+ T S R E +A S +G A+ SS+ +S Sbjct: 595 DSKSGGSGSESDHT---TRSSLRGPRE---RAPSERSGPAASEHSHRSHHSLTSSL-RSH 647 Query: 306 FARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQAMLSNLTF 485 P PG PP +GP P ++G P P +A P+ S +F Sbjct: 648 HTHPSYGPPGVPPLYGPPMLMMTPPPGAMG------PPGAPPGRDLASVPPELTASRQSF 701
>BCL3_HUMAN (P20749) B-cell lymphoma 3-encoded protein (Protein Bcl-3)| Length = 446 Score = 32.7 bits (73), Expect = 0.92 Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Frame = +3 Query: 240 DASGNTDPGQQGVRFSS---MDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDS------- 389 D S NT P + R SS + S + P QS P PP F NF+LP S Sbjct: 368 DRSANTSP-ESSSRLSSNGLLSASPSSSPSQSPPRDPPGFPMAPPNFFLPSPSPPAFLPF 426 Query: 390 VGKACDPFEPNPPVNEP 440 G P P PP P Sbjct: 427 AGVLRGPGRPVPPSPAP 443
>DVL3_HUMAN (Q92997) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 32.7 bits (73), Expect = 0.92 Identities = 32/120 (26%), Positives = 46/120 (38%) Frame = +3 Query: 126 DRRKGGTGLESELWWI*TESGTRKGSEISMKASSSMAGDASGNTDPGQQGVRFSSMDQSC 305 D + GG+G ES+ T S R E +A S +G A+ SS+ +S Sbjct: 595 DSKSGGSGSESDHT---TRSSLRGPRE---RAPSERSGPAASEHSHRSHHSLASSL-RSH 647 Query: 306 FARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQAMLSNLTF 485 P PG PP +GP P ++G P P +A P+ S +F Sbjct: 648 HTHPSYGPPGVPPLYGPPMLMMPPPPAAMG------PPGAPPGRDLASVPPELTASRQSF 701
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Frame = +3 Query: 204 EISMKASSSMAGDASGNTDPGQQGV-----------RFSSMDQSCFARPGQSIPGYPPFF 350 + S+ S G+ G G++ V + S + F PG ++P P Sbjct: 912 DFSVTGESEKKGETVGRGLSGEKAVGKEEKYVVTSEKLSGQYAAVFGAPGHTLPPGEPAL 971 Query: 351 GPQSSNFYLPDDSVGKACDPFEPNPP 428 G PDDS K P PP Sbjct: 972 GEVEERCLSPDDSTVKMASPPPSGPP 997
>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (BND3L) Length = 1241 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Frame = +3 Query: 294 DQSCFARPGQSIPGYPPFFGPQSSNFYLP-DDSVGKACDPFEPNPPVNEPIADWDPQAML 470 D++ A +++ P P S F+L DDS + + P+ P P + P+A Sbjct: 129 DEASEAEGARALTQPSPVSTPSSVQFFLQEDDSADRKAERTSPSSPAPLPHQEATPRASK 188 Query: 471 SNLTFLEQKIKQVKDIVQSMGNRGSQVGGASCELAAKQQ 587 + + + + + + G G GGAS K Q Sbjct: 189 GAQAGTQVEEAEAEAVAVASGTAGGDDGGASGRPLPKAQ 227
>MMP8_MOUSE (O70138) Neutrophil collagenase precursor (EC 3.4.24.34) (Matrix| metalloproteinase-8) (MMP-8) (Collagenase 2) Length = 465 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 246 SGNTDPGQ-QGVRFSSMDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDP 410 S +TDPG ++ + S ++ P I G +GP + S KACDP Sbjct: 226 SHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPIQPTGPSTPKACDP 281
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 22/108 (20%) Frame = +3 Query: 204 EISMKASSSMAGDASGNTDPGQQGVRFSSMDQSCFARPGQSIPGYPPFFGPQSS------ 365 E + + G A +PG G+ S+ ++ PG+ PG+P G + S Sbjct: 1134 EAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEQGVPGRGFPGFPGSKGDKGSKGEVGF 1193 Query: 366 ----------------NFYLPDDSVGKACDPFEPNPPVNEPIADWDPQ 461 F P G+ P P PV P D PQ Sbjct: 1194 PGLAGSPGIPGVKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQ 1241
>MDTB_ECOLI (P76398) Multidrug resistance protein mdtB (Multidrug transporter| mdtB) Length = 1040 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 417 PNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQS-MGNRGSQVGG 557 PNPPV + DP M +T + QV+D+V++ + + SQ+ G Sbjct: 133 PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG 180
>MDTB_ECOL6 (Q8FG04) Multidrug resistance protein mdtB (Multidrug transporter| mdtB) Length = 1040 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 417 PNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQS-MGNRGSQVGG 557 PNPPV + DP M +T + QV+D+V++ + + SQ+ G Sbjct: 133 PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG 180
>MDTB_ECO57 (Q8X7J4) Multidrug resistance protein mdtB (Multidrug transporter| mdtB) Length = 1040 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 417 PNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQS-MGNRGSQVGG 557 PNPPV + DP M +T + QV+D+V++ + + SQ+ G Sbjct: 133 PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG 180
>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)| Length = 412 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = +3 Query: 261 PGQQGVRFSSMDQSCFARPGQSIP-----GYPPFFGPQSSNFYLPDDSVGKACDPFEPNP 425 PG + M S P S P G+PP++ P +S S+G+A P P P Sbjct: 239 PGSRAGSAKPMGGSPLLLPPNSAPPAVTIGFPPYYAPSAS-------SLGQASAPGYPEP 291 Query: 426 PV 431 P+ Sbjct: 292 PL 293
>MDTB_SHIFL (P69340) Multidrug resistance protein mdtB (Multidrug transporter| mdtB) Length = 1039 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 417 PNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQS-MGNRGSQVGG 557 PNPPV + DP M +T + QV+D+V++ + + SQ+ G Sbjct: 133 PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG 180
>UBX5_YEAST (Q06682) UBX domain-containing protein 5| Length = 500 Score = 29.6 bits (65), Expect = 7.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 405 DPFEPNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQSMGNRGSQ 548 DP PNP VNEP+ DP + LT +Q +K+ + + ++ +Q Sbjct: 339 DPKVPNPTVNEPLPKVDP----TTLTEEQQMELAIKESLNNNSSKSNQ 382
>CYPC_STRCN (Q02572) Putative polyketide cyclase| Length = 152 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Frame = -3 Query: 402 KLYPHCHQEGKSWKIEGQRTEDNQGLTGQVLQSKTGP-------WN*NEHPVGQGLCSLT 244 +L H + GK W +RT D + L + + +TGP W E P G Sbjct: 51 RLTMHPDENGKVWSWVSERTADREKLVVRARRVETGPFEYMNIVWEYEETPDG------- 103 Query: 243 RRLPWTTKLSWK 208 R+ WT + K Sbjct: 104 TRMHWTQDFAMK 115
>MDTB_SALTY (Q8ZNQ2) Multidrug resistance protein mdtB (Multidrug transporter| mdtB) Length = 1040 Score = 29.6 bits (65), Expect = 7.8 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 417 PNPPVNEPIADWDPQAMLSNLTFLEQKIKQVKDIVQS-MGNRGSQVGG 557 PNPP+ + DP M +T + QV+D+V++ + + SQV G Sbjct: 133 PNPPIYSKVNPADPPIMTLAVTSNSMPMTQVEDMVETRVAQKISQVSG 180
>LPP_MOUSE (Q8BFW7) Lipoma-preferred partner homolog| Length = 613 Score = 29.6 bits (65), Expect = 7.8 Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 14/148 (9%) Frame = +3 Query: 219 ASSSMAGDASGNTDPGQQGVRFSSMDQSCFARP---GQSIPGYPPFFGPQSSNFYLPDDS 389 A S G + G+T GQQ + ++ +A P Q+ PG P GP+ + Y+ D Sbjct: 304 AGPSYGGRSEGDTAYGQQVQPNTWKREAAYAPPASGNQNHPGMYPVSGPKKT--YITDPV 361 Query: 390 VGKACDPFEP--------NPPVNEPIADWDPQAMLSNLT---FLEQKIKQVKDIVQSMGN 536 P +P PP P + P+ L +LT + + D Sbjct: 362 SAPCAPPLQPKGGYPGPMGPPSIPP--SFRPEDELEHLTKKMLYDMENPPADDYFGRCAR 419 Query: 537 RGSQVGGASCELAAKQQLVTADLTSIII 620 G V G A Q+ D + I+ Sbjct: 420 CGENVVGEGTGCTAMDQVFHVDCFTCIV 447
>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5| protein) (cTAGE family member 5) (Meningioma-expressed antigen 6/11) (MEA6/MEA11) Length = 804 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 333 GYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIAD 449 G+PP+ P+ F P S G++ P PP NEP + Sbjct: 758 GFPPYLPPRPGFFPPPPHSEGRSEFPSGLIPPSNEPATE 796 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,338,849 Number of Sequences: 219361 Number of extensions: 1842624 Number of successful extensions: 5631 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5625 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
