| Clone Name | baal33m18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119629.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C03, full insert sequence Length = 2151 Score = 145 bits (73), Expect = 2e-31 Identities = 157/185 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 551 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 610 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 611 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 670 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagctc 626 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 671 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagctt 730 Query: 627 atctc 631 ||||| Sbjct: 731 atctc 735 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 362 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 421 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 422 ggtcaatcgttccctgcttttcctccactctttgg 456
>ref|NM_190799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1569 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 274 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 333 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 334 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 393 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 394 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 452 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 85 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 144 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 145 ggtcaatcgttccctgcttttcctccactctttgg 179
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 37770201 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 37770260 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 37770261 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 37770320 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 37770321 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 37770379 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 37770012 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 37770071 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 37770072 ggtcaatcgttccctgcttttcctccactctttgg 37770106
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 98502 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 98561 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 98562 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 98621 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 98622 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 98680 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 98313 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 98372 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 98373 ggtcaatcgttccctgcttttcctccactctttgg 98407
>dbj|AK100840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123F03, full insert sequence Length = 3820 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 2217 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 2276 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 2277 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 2336 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 2337 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 2395 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 2028 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 2087 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 2088 ggtcaatcgttccctgcttttcctccactctttgg 2122
>dbj|AK072417.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085P15, full insert sequence Length = 2741 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 413 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 472 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 473 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 532 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 533 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 591 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 224 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 283 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 284 ggtcaatcgttccctgcttttcctccactctttgg 318
>dbj|AK072211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161E15, full insert sequence Length = 1896 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 408 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 467 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 468 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 527 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 528 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 586 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 219 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 278 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 279 ggtcaatcgttccctgcttttcctccactctttgg 313
>dbj|AK065024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G09, full insert sequence Length = 2100 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 477 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 536 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 537 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 596 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 597 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 655 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 288 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 347 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 348 ggtcaatcgttccctgcttttcctccactctttgg 382
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 141 bits (71), Expect = 3e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 447 gattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagcag 506 |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 29449 gattgggaccctcaggcaatgctgagcaacttatccttccttgagcagaagatcaagcag 29508 Query: 507 gtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcctgc 566 || ||||| ||||||||||| ||| |||| || | |||||| |||| ||||| |||| || Sbjct: 29509 gtaaaagacatcgtgcagtctatgagtaatcgtgagagccaagttgctggtggttccagc 29568 Query: 567 gagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagct 625 ||| |||||||||||||| |||||||| ||||| |||| || ||||||||||| Sbjct: 29569 gaggcacaagcaaagcagcagcttgtcactgctgatctcacttgtattataattcagct 29627 Score = 65.9 bits (33), Expect = 2e-07 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 261 cctggccaacagggtgttcgtttcagttccatggaccagtct---tgctttgcaagacct 317 |||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 29260 cctgaccaacagggtgttcgattcagttccatggaccagcctccatgttttgcaagacct 29319 Query: 318 ggccagtcaatccctggttatcctccgttctttgg 352 || || || |||||| || |||||| ||||||| Sbjct: 29320 ggtcaatcgttccctgcttttcctccactctttgg 29354
>gb|AY104913.1| Zea mays PCO129489 mRNA sequence Length = 864 Score = 135 bits (68), Expect = 2e-28 Identities = 155/184 (84%) Strand = Plus / Plus Query: 445 cagattgggatcctcaggcaatgctgagcaaccttaccttccttgagcagaagatcaagc 504 ||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||| Sbjct: 497 cagattgggatccgcaggctatagtgagcaacctaaccttccttgagcagaagatcaagc 556 Query: 505 aggtgaaagatatcgtgcagtccatgggtaaccgagggagccaggttggtggtgcttcct 564 |||| |||||||| |||||||| ||| |||| |||| || ||| | | ||| | |||| Sbjct: 557 aggtaaaagatattgtgcagtctatgagtaatcgagagaaccaattagctggcggttcca 616 Query: 565 gcgagcttgccgcaaagcagcagctcgtcactgccgatctgacttccatcataattcagc 624 | ||||| |||||||||||||| ||||| ||||| ||||| ||| ||| ||||| |||| Sbjct: 617 gtgagctagccgcaaagcagcatctcgtaactgctgatctcactagcattataatccagc 676 Query: 625 tcat 628 |||| Sbjct: 677 tcat 680
>gb|AC142343.5| Pan troglodytes BAC clone CH251-161L14 from X, complete sequence Length = 146617 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 atcaagcaggtgaaagatatc 518 ||||||||||||||||||||| Sbjct: 109109 atcaagcaggtgaaagatatc 109129
>gb|AC003003.1|HUAC003003 Human Chromosome 16 BAC clone CIT987SK-254P9, complete sequence Length = 130381 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 ctggactagaatctgagctct 165 ||||||||||||||||||||| Sbjct: 58869 ctggactagaatctgagctct 58889
>emb|AL627224.14| Human DNA sequence from clone RP13-146A14 on chromosome X Contains a proteasome (prosome, macropain) subunit alpha, type 5 (PSMA5) pseudogene, complete sequence Length = 59481 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 atcaagcaggtgaaagatatc 518 ||||||||||||||||||||| Sbjct: 34010 atcaagcaggtgaaagatatc 34030
>emb|AL353113.7| Human DNA sequence from clone RP11-304I5 on chromosome 10 Contains the gene for a novel lipase and gene MGC22805, complete sequence Length = 43456 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tgaatgagcctatagcagatt 450 ||||||||||||||||||||| Sbjct: 42656 tgaatgagcctatagcagatt 42636
>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the 5' end of a novel gene (MGC22805), a novel pseudogene (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family domain containing protein (KIAA1373 FLJ35627 FLJ33359), a novel gene (FLJ36021), the ACTA2 gene for actin alpha 2 smooth muscle aorta, the TNFRSF6 gene for tumor necrosis factor receptor superfamily member 6 and two CpG islands, complete sequence Length = 187313 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tgaatgagcctatagcagatt 450 ||||||||||||||||||||| Sbjct: 1199 tgaatgagcctatagcagatt 1179
>gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212483 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 atgcttttcctgtcttattat 96 ||||||||||||||||||||| Sbjct: 77105 atgcttttcctgtcttattat 77125
>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence Length = 213575 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 gtttcagttccatggaccagt 300 ||||||||||||||||||||| Sbjct: 199006 gtttcagttccatggaccagt 198986
>emb|AL022166.1|HS960O17 Human DNA sequence from clone RP5-960O17 on chromosome Xp11.21-11.22, complete sequence Length = 129226 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 atcaagcaggtgaaagatatc 518 ||||||||||||||||||||| Sbjct: 23568 atcaagcaggtgaaagatatc 23548
>emb|AL805960.10| Mouse DNA sequence from clone RP23-20P17 on chromosome X, complete sequence Length = 172780 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 cagtcttgctttgcaagacct 317 ||||||||||||||||||||| Sbjct: 149803 cagtcttgctttgcaagacct 149823
>gb|AE017140.1| Yersinia pestis biovar Medievalis str. 91001 section 14 of 16 of the complete genome Length = 290393 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 agggagccaggttggtggtg 558 |||||||||||||||||||| Sbjct: 132553 agggagccaggttggtggtg 132572
>gb|AY735312.1|AY735301S12 Homo sapiens gonadotropin-regulated testicular RNA helicase-GRTH/DDX25 gene, complete cds; and exon 12 Length = 298 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 249 aagcttgtgatccttttgaa 268
>ref|NM_013264.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 (DDX25), mRNA Length = 1708 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1640 aagcttgtgatccttttgaa 1659
>gb|BC038810.1| Mus musculus cytochrome P450, family 7, subfamily b, polypeptide 1, mRNA (cDNA clone MGC:46910 IMAGE:5098739), complete cds Length = 1814 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggccctgttcctcctcacc 24 |||||||||||||||||||| Sbjct: 181 cggccctgttcctcctcacc 200
>gb|AC147322.2| Pan troglodytes BAC clone RP43-41H22 from 7, complete sequence Length = 174281 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gggaacacagaccctggcca 268 |||||||||||||||||||| Sbjct: 32839 gggaacacagaccctggcca 32820
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 agggagccaggttggtggtg 558 |||||||||||||||||||| Sbjct: 3732708 agggagccaggttggtggtg 3732689
>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence Length = 192581 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 atctgaactgaaagtgggacgaga 194 |||| ||||||||||||||||||| Sbjct: 127037 atctaaactgaaagtgggacgaga 127014
>gb|BC049436.1| Danio rerio M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein), mRNA (cDNA clone IMAGE:5612080), containing frame-shift errors Length = 2238 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1042 ctttgaccttcctgatgacagtgagggt 1069
>gb|AC004549.1| Homo sapiens BAC clone CTA-459N13 from 7, complete sequence Length = 123891 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gggaacacagaccctggcca 268 |||||||||||||||||||| Sbjct: 92308 gggaacacagaccctggcca 92289
>gb|BC050360.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 25, mRNA (cDNA clone MGC:51751 IMAGE:5742404), complete cds Length = 1799 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1652 aagcttgtgatccttttgaa 1671
>gb|BT009149.1| Triticum aestivum clone wl1n.pk0060.b11:fis, full insert mRNA sequence Length = 1480 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccttgagcagaagatcaag 503 |||||||||||||||||||| Sbjct: 1326 tccttgagcagaagatcaag 1345
>gb|BC035388.1| Homo sapiens, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 25, clone IMAGE:5166189, mRNA, partial cds Length = 1730 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1628 aagcttgtgatccttttgaa 1647
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 agggagccaggttggtggtg 558 |||||||||||||||||||| Sbjct: 3850681 agggagccaggttggtggtg 3850662
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 tccttgagcagaagatcaagcagg 507 ||||||||| |||||||||||||| Sbjct: 310846 tccttgagctgaagatcaagcagg 310823
>emb|AJ414145.1| Yersinia pestis strain CO92 complete genome; segment 5/20 Length = 208050 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 agggagccaggttggtggtg 558 |||||||||||||||||||| Sbjct: 193606 agggagccaggttggtggtg 193587
>gb|AF155140.2| Homo sapiens gonadotropin-regulated testicular RNA helicase mRNA, complete cds Length = 1744 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1676 aagcttgtgatccttttgaa 1695
>emb|CR605679.1| full-length cDNA clone CS0DF004YN03 of Fetal brain of Homo sapiens (human) Length = 1672 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1650 aagcttgtgatccttttgaa 1669
>emb|CR604125.1| full-length cDNA clone CS0DD006YB06 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1654 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1625 aagcttgtgatccttttgaa 1644
>emb|CR603268.1| full-length cDNA clone CS0DB002YP21 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1646 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1622 aagcttgtgatccttttgaa 1641
>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete sequence Length = 217064 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccctgttcctcctcaccggg 27 |||||||||||||||||||| Sbjct: 45650 ccctgttcctcctcaccggg 45669
>gb|AC011939.9| Homo sapiens chromosome 15, clone RP11-16E23, complete sequence Length = 162964 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 taaagcttgtgatccttttg 414 |||||||||||||||||||| Sbjct: 104511 taaagcttgtgatccttttg 104530
>gb|AC093259.2| Homo sapiens chromosome 5 clone RP11-229C3, complete sequence Length = 183380 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cctgttcctcctcaccgggt 28 |||||||||||||||||||| Sbjct: 80612 cctgttcctcctcaccgggt 80631
>ref|XM_677798.1| PREDICTED: Danio rerio M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein), transcript variant 1 (mphosph10), mRNA Length = 2214 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1047 ctttgaccttcctgatgacagtgagggt 1074
>ref|XM_701653.1| PREDICTED: Danio rerio M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein), transcript variant 2 (mphosph10), mRNA Length = 2250 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1083 ctttgaccttcctgatgacagtgagggt 1110
>ref|XM_687645.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 1 (LOC569659), mRNA Length = 2249 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1068 ctttgaccttcctgatgacagtgagggt 1095
>ref|XM_704568.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 3 (LOC569659), mRNA Length = 1609 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 440 ctttgaccttcctgatgacagtgagggt 467
>ref|XM_704567.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 2 (LOC569659), mRNA Length = 2237 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1068 ctttgaccttcctgatgacagtgagggt 1095
>ref|XM_687420.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 1 (LOC569537), mRNA Length = 2249 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1068 ctttgaccttcctgatgacagtgagggt 1095
>ref|XM_704563.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 3 (LOC569537), mRNA Length = 1609 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 440 ctttgaccttcctgatgacagtgagggt 467
>ref|XM_704562.1| PREDICTED: Danio rerio similar to M-phase phosphoprotein 10, transcript variant 2 (LOC569537), mRNA Length = 2237 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 1068 ctttgaccttcctgatgacagtgagggt 1095
>emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 in linkage group 7, complete sequence Length = 200579 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 137823 ctttgaccttcctgatgacagtgagggt 137850
>gb|AC147316.4| Pan troglodytes BAC clone RP43-49H2 from chromosome 7, complete sequence Length = 209609 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gggaacacagaccctggcca 268 |||||||||||||||||||| Sbjct: 112615 gggaacacagaccctggcca 112596
>dbj|AB168870.1| Macaca fascicularis testis cDNA, clone: QtsA-15494, similar to human DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 (DDX25), mRNA, RefSeq: NM_013264.2 Length = 1706 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1636 aagcttgtgatccttttgaa 1655
>dbj|AB168741.1| Macaca fascicularis testis cDNA, clone: QtsA-14501, similar to human DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 (DDX25), mRNA, RefSeq: NM_013264.2 Length = 1723 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1665 aagcttgtgatccttttgaa 1684
>gb|AC053503.7| Homo sapiens BAC clone RP11-316O14 from 2, complete sequence Length = 183625 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccctgttcctcctcaccggg 27 |||||||||||||||||||| Sbjct: 165032 ccctgttcctcctcaccggg 165051
>gb|AC084724.6| Homo sapiens BAC clone RP11-613O14 from 4, complete sequence Length = 172647 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 cgatctgacttccatcataa 618 |||||||||||||||||||| Sbjct: 84947 cgatctgacttccatcataa 84966
>emb|BX072535.4| Zebrafish DNA sequence from clone CH211-128E5, complete sequence Length = 189694 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 cttttaccttcctgatgacagtgtgggt 395 |||| |||||||||||||||||| |||| Sbjct: 3355 ctttgaccttcctgatgacagtgagggt 3382
>dbj|AP000842.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-680F20riken, complete sequence Length = 179848 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 85324 aagcttgtgatccttttgaa 85343
>emb|AL596203.6| Zebrafish DNA sequence from clone BUSM1-94E17 in linkage group 3, complete sequence Length = 104106 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 48952 aagcttgtgatccttttgaa 48933
>gb|DQ273596.1| Pseudomonas phage phi-6 strain CA/KW064b segment L P2 gene, partial cds Length = 413 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 aaccttaccttccttgagca 493 |||||||||||||||||||| Sbjct: 96 aaccttaccttccttgagca 77
>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3, complete sequence Length = 171210 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 51377 aagcttgtgatccttttgaa 51358
>gb|BC031098.1| Homo sapiens cDNA clone IMAGE:5295943, containing frame-shift errors Length = 1767 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aagcttgtgatccttttgaa 416 |||||||||||||||||||| Sbjct: 1702 aagcttgtgatccttttgaa 1721
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 ctgtcttattatcaatttctcgtt 108 ||||||||||| |||||||||||| Sbjct: 2702524 ctgtcttattaacaatttctcgtt 2702547
>gb|U36993.1|MMU36993 Mus musculus cytochrome P450 Cyp7b1 mRNA, complete cds Length = 1880 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggccctgttcctcctcacc 24 |||||||||||||||||||| Sbjct: 166 cggccctgttcctcctcacc 185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,185,728 Number of Sequences: 3902068 Number of extensions: 5185728 Number of successful extensions: 93193 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92974 Number of HSP's gapped (non-prelim): 209 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)