ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive pro... 254 5e-77
2CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive pro... 235 4e-70
3GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensiti... 105 5e-28
4GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensi... 104 5e-27
5GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensi... 100 3e-25
6RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Sca... 97 1e-24
7RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein ... 94 2e-24
8SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1) 94 2e-24
9DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8) 93 3e-24
10RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mut... 96 6e-24
11GAI_GOSHI (Q84TQ7) DELLA protein GAI (Gibberellic acid-insensiti... 95 6e-24
12RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrR... 96 8e-24
13GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensiti... 95 8e-24
14RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrR... 97 1e-23
15SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (... 90 2e-23
16RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3) 93 3e-23
17GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-inse... 92 4e-23
18RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA... 89 2e-22
19NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein 92 2e-21
20MOC_ORYSA (Q84MM9) Protein MONOCULM 1 79 1e-14
21NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein 57 4e-08
22SYD_PSEHT (Q3IIN7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 32 1.7
23SYD_COLP3 (Q483C7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 32 1.7
24BACC_BACAM (Q8KWS9) Bacilysin biosynthesis oxidoreductase bacC (... 31 2.9
25SAHH_GLOVI (Q7NGI6) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 30 6.5
26SYD_VIBCH (Q9KSU0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 30 8.4
27BACC_BACSU (P39640) Bacilysin biosynthesis oxidoreductase bacC (... 30 8.4

>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2|
          Length = 544

 Score =  254 bits (650), Expect(2) = 5e-77
 Identities = 122/186 (65%), Positives = 154/186 (82%)
 Frame = +2

Query: 8   STGHALYKSLKCKEPQPTNSELMSYMHLLYDICPFFKFGYMSANGAIAEAVKGENFIHII 187
           S+G ++YK+LKCKEP+  +S+L+SYMH LY+ CP+FKFGYMSANGAIAEAVKGE+ IHII
Sbjct: 228 SSGISIYKALKCKEPK--SSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHII 285

Query: 188 DFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCC 367
           DF I+QG+QW++++QALAAR  GPP +RITGIDDS SAYARGGGL++VGRRL +IA  C 
Sbjct: 286 DFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCK 345

Query: 368 LPFEFNAVNAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSL 547
           +PFEF+ +  +  +V   HL +  GEA+AVNF  +LHH PDESV   NHRDR+LRMVKSL
Sbjct: 346 VPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSL 405

Query: 548 SPRVVT 565
           SP+V+T
Sbjct: 406 SPKVLT 411



 Score = 53.5 bits (127), Expect(2) = 5e-77
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           LVE E+NTNTAPF  R+ ETLDYYTA+FE+ID
Sbjct: 412 LVEMESNTNTAPFPQRFAETLDYYTAIFESID 443



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>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1|
          Length = 571

 Score =  235 bits (599), Expect(2) = 4e-70
 Identities = 114/186 (61%), Positives = 149/186 (80%)
 Frame = +2

Query: 8   STGHALYKSLKCKEPQPTNSELMSYMHLLYDICPFFKFGYMSANGAIAEAVKGENFIHII 187
           ++G  +Y++LKC+EP+  + EL+SYM +LY+ICP+FKFGYM+ANGAIAEA++ EN IHII
Sbjct: 255 NSGTNIYRALKCREPE--SKELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHII 312

Query: 188 DFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCC 367
           DFQIAQG+QW+T+IQALAAR  GPP +RITGIDD  S YARG GLDIVG+ L ++++   
Sbjct: 313 DFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFK 372

Query: 368 LPFEFNAVNAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSL 547
           +P EF  ++  + +VT E L+IR GEA++VNF  QLHHTPDESV + N RD +LRMVK L
Sbjct: 373 IPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGL 432

Query: 548 SPRVVT 565
           SP+V T
Sbjct: 433 SPKVTT 438



 Score = 50.1 bits (118), Expect(2) = 4e-70
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           LVEQE++TNT PF  R+ ET++YY+AMFE+ID
Sbjct: 439 LVEQESHTNTTPFLMRFGETMEYYSAMFESID 470



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>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein)
          Length = 588

 Score =  105 bits (263), Expect(2) = 5e-28
 Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
 Frame = +2

Query: 56  PTNSELMSYMHLL----YDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVT 223
           P +S   SY  +L    Y+ CP+ KF + +AN AI EA  G N +H+IDF + QG QW  
Sbjct: 256 PQDSMESSYTDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPA 315

Query: 224 MIQALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNA 388
           ++QALA R  GPP  R+TGI     D++D+       L  VG +L  +A++  + FEF  
Sbjct: 316 LMQALALRPGGPPAFRLTGIGPPQPDNTDA-------LQQVGWKLAQLAETIGVEFEFRG 368

Query: 389 VNAAS-HEVTLEHLDIR--KGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRV 559
             A S  ++    LDIR  + EA+A+N  ++LH        IE    ++L  +K ++P++
Sbjct: 369 FVANSLADLDATILDIRPSETEAVAINSVFELHRLLSRPGAIE----KVLNSIKQINPKI 424

Query: 560 VT 565
           VT
Sbjct: 425 VT 426



 Score = 38.5 bits (88), Expect(2) = 5e-28
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           LVEQEAN N   F  R+ E L YY+ MF++++
Sbjct: 427 LVEQEANHNAGVFIDRFNEALHYYSTMFDSLE 458



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>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant|
           protein 1) (VvGAI1)
          Length = 590

 Score =  104 bits (260), Expect(2) = 5e-27
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
 Frame = +2

Query: 53  QPTNSELMSYMHL-LYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMI 229
           +P +S     + +  Y+ CP+ KF + +AN AI EA +G+  +H+IDF + QG QW  ++
Sbjct: 273 KPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALM 332

Query: 230 QALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVN 394
           QALA R  GPP  R+TGI     D++D        L  VG +L  +A++  + FE+    
Sbjct: 333 QALALRPGGPPSFRLTGIGPPSTDNTDH-------LHEVGWKLAQLAETIHVEFEYRGFV 385

Query: 395 AAS-HEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           A S  ++    L++R GE++AVN  ++LH        IE    R+L  VK + P +VT
Sbjct: 386 ANSLADLDASMLELRDGESVAVNSVFELHSLLARPGGIE----RVLSAVKDMKPDIVT 439



 Score = 36.2 bits (82), Expect(2) = 5e-27
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E+L YY+ +F++++
Sbjct: 440 IVEQEANHNGPVFLDRFTESLHYYSTLFDSLE 471



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>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem|
           protein) (GAIP) (CmGAIP)
          Length = 579

 Score = 99.8 bits (247), Expect(2) = 3e-25
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
 Frame = +2

Query: 74  MSYMHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARAS 253
           M  MH  Y+ CP+ KF + +AN AI EA +G+  +H+IDF + QG QW  +IQALA R S
Sbjct: 279 MLQMHF-YESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPS 337

Query: 254 GPPYLRITGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFE---FNAVNAASHE 409
           GPP  R+TGI     D+SD        L  VG +L   A++  + FE   F A + A  +
Sbjct: 338 GPPTFRLTGIGPPAPDNSDY-------LQDVGWKLVKFAETLHVEFEYRGFVANSLADLD 390

Query: 410 VTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
            ++  L   + E++ VN  ++LH        IE    ++L +VK + P +VT
Sbjct: 391 ASMLELRPSEVESVVVNSVFELHQLLARPGAIE----KVLSVVKQMKPEIVT 438



 Score = 35.4 bits (80), Expect(2) = 3e-25
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E+L YY+ +F++++
Sbjct: 439 VVEQEANHNGPVFVERFTESLHYYSTLFDSLE 470



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>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like|
           protein 19)
          Length = 547

 Score = 97.4 bits (241), Expect(2) = 1e-24
 Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 2/177 (1%)
 Frame = +2

Query: 41  CKEPQPTNSELMSYMHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWV 220
           C    P+  E++  MH  Y+ CP+ KF + +AN AI EAV     +H+ID  + QG QW 
Sbjct: 243 CAAVNPSFEEVLE-MHF-YESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWP 300

Query: 221 TMIQALAARASGPPYLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAA 400
            ++QALA R  GPP  R+TGI    +       L  +G +L   AQ+  + FEF  + A 
Sbjct: 301 ALMQALALRPGGPPSFRLTGIGPPQT--ENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAE 358

Query: 401 S-HEVTLEHLDIR-KGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           S  ++  E  + R + E + VN  ++LH     S  IE    ++L  VK++ P +VT
Sbjct: 359 SLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIE----KLLNTVKAIKPSIVT 411



 Score = 35.4 bits (80), Expect(2) = 1e-24
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E L YY+++F++++
Sbjct: 412 VVEQEANHNGIVFLDRFNEALHYYSSLFDSLE 443



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>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein|
           Rht-B1/Rht-D1)
          Length = 623

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
 Frame = +2

Query: 14  GHALYKSLKCKEPQPTNSEL-MSYMHLL----YDICPFFKFGYMSANGAIAEAVKGENFI 178
           G AL + +    PQP +S L  ++  LL    Y+ CP+ KF + +AN AI EA  G   +
Sbjct: 279 GEALARRVFRFRPQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRV 338

Query: 179 HIIDFQIAQGSQWVTMIQALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRL 343
           H++DF I QG QW  ++QALA R  GPP  R+TG+     D++D+       L  VG +L
Sbjct: 339 HVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDA-------LQQVGWKL 391

Query: 344 CNIAQSCCLPFEFNAVNAASHEVTLEHLD------------IRKGEAIAVNFAYQLHHTP 487
              A +  + F++  + AA    TL  L+              + E IAVN  +++H   
Sbjct: 392 AQFAHTIRVDFQYRGLVAA----TLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRLL 447

Query: 488 DESVCIENHRDRILRMVKSLSPRVVT 565
            +   +E    ++L  V+++ PR+VT
Sbjct: 448 AQPGALE----KVLGTVRAVRPRIVT 469



 Score = 38.9 bits (89), Expect(2) = 2e-24
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N+  F  R+ E+L YY+ MF++++
Sbjct: 470 VVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 501



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>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)|
          Length = 618

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
 Frame = +2

Query: 14  GHALYKSLKCKEPQPTNSEL-MSYMHLL----YDICPFFKFGYMSANGAIAEAVKGENFI 178
           G AL + +    PQP +S L  ++  LL    Y+ CP+ KF + +AN AI EA  G   +
Sbjct: 275 GEALARRVFRFRPQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRV 334

Query: 179 HIIDFQIAQGSQWVTMIQALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRL 343
           H++DF I QG QW  ++QALA R  GPP  R+TG+     D++D+       L  VG +L
Sbjct: 335 HVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDA-------LQQVGWKL 387

Query: 344 CNIAQSCCLPFEFNAVNAASHEVTLEHLD------------IRKGEAIAVNFAYQLHHTP 487
              A +  + F++  + AA    TL  L+              + E IAVN  +++H   
Sbjct: 388 AQFAHTIRVDFQYRGLVAA----TLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRLL 443

Query: 488 DESVCIENHRDRILRMVKSLSPRVVT 565
            +   +E    ++L  V+++ PR+VT
Sbjct: 444 AQPGALE----KVLGTVRAVRPRIVT 465



 Score = 38.9 bits (89), Expect(2) = 2e-24
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N+  F  R+ E+L YY+ MF++++
Sbjct: 466 VVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 497



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>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 92.8 bits (229), Expect(2) = 3e-24
 Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 18/202 (8%)
 Frame = +2

Query: 14  GHALYKSLKCKEPQPTNSEL-MSYMHLL----YDICPFFKFGYMSANGAIAEAVKGENFI 178
           G AL + +    P P +S L  ++  LL    Y+ CP+ KF + +AN AI EA  G   +
Sbjct: 288 GEALARRVYRFRPPPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRV 347

Query: 179 HIIDFQIAQGSQWVTMIQALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRL 343
           H++DF I QG QW  ++QALA R  GPP  R+TG+     D++D+       L  VG +L
Sbjct: 348 HVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDA-------LQQVGWKL 400

Query: 344 CNIAQSCCLPFEFNAVNAASHEVTLEHLDIR--------KGEAIAVNFAYQLHHTPDESV 499
              A +  + F++  + AA+    LE   ++        + E IAVN  ++LH    +  
Sbjct: 401 AQFAHTIRVDFQYRGLVAAT-LADLEPFMLQPEGDDTDDEPEVIAVNSVFELHRLLAQPG 459

Query: 500 CIENHRDRILRMVKSLSPRVVT 565
            +E    ++L  V+++ PR+VT
Sbjct: 460 ALE----KVLGTVRAVRPRIVT 477



 Score = 38.9 bits (89), Expect(2) = 3e-24
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N+  F  R+ E+L YY+ MF++++
Sbjct: 478 VVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 509



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>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)|
           (GAI-related sequence) (Restoration of growth on ammonia
           protein 1)
          Length = 587

 Score = 95.9 bits (237), Expect(2) = 6e-24
 Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
 Frame = +2

Query: 83  MHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPP 262
           MH  Y+ CP+ KF + +AN AI EA +G+  +H+IDF + QG QW  ++QALA R  GPP
Sbjct: 293 MHF-YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPP 351

Query: 263 YLRITGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAAS-HEVTLEH 424
             R+TGI     D+SD        L  VG +L  +A++  + FE+    A S  ++    
Sbjct: 352 TFRLTGIGPPAPDNSDH-------LHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASM 404

Query: 425 LDIRKG--EAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           L++R    EA+AVN  ++LH        IE    ++L +VK + P + T
Sbjct: 405 LELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFT 449



 Score = 34.7 bits (78), Expect(2) = 6e-24
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQE+N N   F  R+ E+L YY+ +F++++
Sbjct: 450 VVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 481



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>GAI_GOSHI (Q84TQ7) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein) (GhGAI)
          Length = 537

 Score = 95.1 bits (235), Expect(2) = 6e-24
 Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
 Frame = +2

Query: 95  YDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRI 274
           Y+ CP+ KF + +AN AI EA    + +H+IDF + QG QW  ++QALA R  GPP  R+
Sbjct: 245 YETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRL 304

Query: 275 TGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAAS-HEVTLEHLDIR 436
           TGI     D++D+       L  VG +L  +A+   + FEF    A S  ++  E LDIR
Sbjct: 305 TGIGPPQPDNTDA-------LQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIR 357

Query: 437 --KGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
             + E +AVN  ++LH        IE    +++  +K++ P++VT
Sbjct: 358 PPEIEVVAVNAVFELHPLLARPGGIE----KVVSSIKAMKPKIVT 398



 Score = 35.4 bits (80), Expect(2) = 6e-24
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E L YY+ +F++++
Sbjct: 399 VVEQEANHNGPVFLDRFTEALHYYSTLFDSLE 430



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>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)|
          Length = 573

 Score = 95.5 bits (236), Expect(2) = 8e-24
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
 Frame = +2

Query: 83  MHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPP 262
           MH  Y+ CP+ KF + +AN AI EA +G+  +H+IDF + QG QW  ++QALA R  GPP
Sbjct: 280 MHF-YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPP 338

Query: 263 YLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFE---FNAVNAASHEVTLEHLDI 433
             R+TGI     A      L  VG +L  +A++  + FE   F A + A  + ++  L  
Sbjct: 339 SFRLTGI--GPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRP 396

Query: 434 RKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
            + EA+AVN  ++LH     +  IE    ++  +VK + P + T
Sbjct: 397 SETEAVAVNSVFELHKLLGRTGGIE----KVFGVVKQIKPVIFT 436



 Score = 34.7 bits (78), Expect(2) = 8e-24
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQE+N N   F  R+ E+L YY+ +F++++
Sbjct: 437 VVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 468



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>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein) (Restoration of growth on ammonia protein 2)
          Length = 533

 Score = 94.7 bits (234), Expect(2) = 8e-24
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
 Frame = +2

Query: 83  MHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPP 262
           MH  Y+ CP+ KF + +AN AI EA +G+  +H+IDF ++QG QW  ++QALA R  GPP
Sbjct: 241 MHF-YETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPP 299

Query: 263 YLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFE---FNAVNAASHEVTLEHLDI 433
             R+TGI     A      L  VG +L ++A++  + FE   F A   A  + ++  L  
Sbjct: 300 VFRLTGI--GPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRP 357

Query: 434 RKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
            + E++AVN  ++LH        I    D++L +V  + P + T
Sbjct: 358 SEIESVAVNSVFELHKLLGRPGAI----DKVLGVVNQIKPEIFT 397



 Score = 35.4 bits (80), Expect(2) = 8e-24
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQE+N N+  F  R+ E+L YY+ +F++++
Sbjct: 398 VVEQESNHNSPIFLDRFTESLHYYSTLFDSLE 429



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>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)|
          Length = 579

 Score = 97.1 bits (240), Expect(2) = 1e-23
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
 Frame = +2

Query: 83  MHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPP 262
           MH  Y+ CP+ KF + +AN AI EA +G+  +H+IDF + QG QW  ++QALA R  GPP
Sbjct: 286 MHF-YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPP 344

Query: 263 YLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAAS-HEVTLEHLDIRK 439
             R+TGI     A      L  VG +L  +A++  + FE+    A S  ++    L++R 
Sbjct: 345 VFRLTGI--GPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRP 402

Query: 440 G--EAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
              EA+AVN  ++LH     +  IE    ++L +VK + P + T
Sbjct: 403 SEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFT 442



 Score = 32.7 bits (73), Expect(2) = 1e-23
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQE++ N   F  R+ E+L YY+ +F++++
Sbjct: 443 VVEQESSHNGPVFLDRFTESLHYYSTLFDSLE 474



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>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic|
           acid-insensitive mutant protein) (OsGAI)
          Length = 625

 Score = 90.1 bits (222), Expect(2) = 2e-23
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
 Frame = +2

Query: 95  YDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRI 274
           Y+ CP+ KF + +AN AI EA  G + +H++DF I QG QW  ++QALA R  GPP  R+
Sbjct: 317 YESCPYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRL 376

Query: 275 TGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAASHEVTLEHLDIRK 439
           TG+     D++D+       L  VG +L   A +  + F++  + AA+       +   +
Sbjct: 377 TGVGPPQPDETDA-------LQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPE 429

Query: 440 GEA--------IAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           GEA        IAVN  ++LH    +   +E    ++L  V ++ PR+VT
Sbjct: 430 GEADANEEPEVIAVNSVFELHRLLAQPGALE----KVLGTVHAVRPRIVT 475



 Score = 38.9 bits (89), Expect(2) = 2e-23
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N+  F  R+ E+L YY+ MF++++
Sbjct: 476 VVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 507



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>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)|
          Length = 523

 Score = 93.2 bits (230), Expect(2) = 3e-23
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
 Frame = +2

Query: 95  YDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRI 274
           YD CP+ KF + +AN AI EAV     +H+ID  + QG QW  ++QALA R  GPP  R+
Sbjct: 232 YDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRL 291

Query: 275 TGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAAS-HEVTLEHLDIR-KGEA 448
           TG+ +  +      G+  +G +L  +AQ+  + F+FN +      ++  +  + R + E 
Sbjct: 292 TGVGNPSNR----EGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESET 347

Query: 449 IAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           + VN  ++LH    +   IE    ++L  VK++ P +VT
Sbjct: 348 LVVNSVFELHPVLSQPGSIE----KLLATVKAVKPGLVT 382



 Score = 35.0 bits (79), Expect(2) = 3e-23
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E L YY+++F++++
Sbjct: 383 VVEQEANHNGDVFLDRFNEALHYYSSLFDSLE 414



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>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem|
           protein B) (GAIP-B) (CmGAIP-B)
          Length = 587

 Score = 92.0 bits (227), Expect(2) = 4e-23
 Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
 Frame = +2

Query: 41  CKEPQPTNSELMSYMHL-LYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQW 217
           C E  P +  +   + L  Y+  P+ KF + +AN AI EA +G+  +H+IDF + QG QW
Sbjct: 274 CPE-NPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQW 332

Query: 218 VTMIQALAARASGPPYLRITGI-----DDSDSAYARGGGLDIVGRRLCNIAQSCCLPFE- 379
             ++QALA R SGPP  R+TGI     D+SD        L  VG +L  + ++  + FE 
Sbjct: 333 PALLQALALRPSGPPAFRLTGIGPPAPDNSDY-------LQDVGWKLAKLVETINVEFEY 385

Query: 380 --FNAVNAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSP 553
             F A + A  + ++  L   + E++ VN  ++LH        IE    +++ +VK + P
Sbjct: 386 RGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIE----KVMSVVKQMKP 441

Query: 554 RVVT 565
            ++T
Sbjct: 442 EIMT 445



 Score = 35.8 bits (81), Expect(2) = 4e-23
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E+L YY+ +F++++
Sbjct: 446 VVEQEANHNGPVFMDRFTESLHYYSTLFDSLE 477



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>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)|
          Length = 511

 Score = 89.0 bits (219), Expect(2) = 2e-22
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
 Frame = +2

Query: 95  YDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRI 274
           Y+ CP+ KF + +AN AI E       +H+ID  +  G QW  +IQALA R +GPP  R+
Sbjct: 227 YESCPYLKFAHFTANQAILEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRL 286

Query: 275 TGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAAS-HEVTLEHLDIRKG-EA 448
           TGI  S +       +  VG +L  +A +  + FEF ++   +  ++  E LDIR G E+
Sbjct: 287 TGIGYSLT------DIQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLES 340

Query: 449 IAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVT 565
           +AVN  ++LH        I    D+ L  +KS+ P ++T
Sbjct: 341 VAVNSVFELHRLLAHPGSI----DKFLSTIKSIRPDIMT 375



 Score = 36.6 bits (83), Expect(2) = 2e-22
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           +VEQEAN N   F  R+ E+L YY+++F++++
Sbjct: 376 VVEQEANHNGTVFLDRFTESLHYYSSLFDSLE 407



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>NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein|
          Length = 508

 Score = 92.0 bits (227), Expect(2) = 2e-21
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
 Frame = +2

Query: 50  PQPTNSELMSYMHLLYDICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMI 229
           P    ++ ++   LL D+ P+ KFG+ +AN AI EAV  E  +H+ID+ I +G QW ++I
Sbjct: 198 PHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLI 257

Query: 230 QALAARASGPPYLRITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAASHE 409
           Q+LA+  +G P+LRIT +  + +       +   GRRL + A S   PF F+     S E
Sbjct: 258 QSLASNNNG-PHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDE 316

Query: 410 V-TLEHLDIRKGEAIAVNFAYQLHH---TPDESVCIENHRDRILRMVKSLSPRVVT 565
                 L + +GEA+  N    L H      ESV         L   K+L+P++VT
Sbjct: 317 TFRPSALKLVRGEALVFNCMLNLPHLSYRAPESVA------SFLNGAKTLNPKLVT 366



 Score = 30.4 bits (67), Expect(2) = 2e-21
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 567 LVEQEANTNTAPFFSRYMETLDYYTAMFEAID 662
           LVE+E  +    F  R+M++L +Y+A+F++++
Sbjct: 367 LVEEEVGSVIGGFVERFMDSLHHYSAVFDSLE 398



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>MOC_ORYSA (Q84MM9) Protein MONOCULM 1|
          Length = 441

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 61/186 (32%), Positives = 81/186 (43%), Gaps = 25/186 (13%)
 Frame = +2

Query: 101 ICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARAS---GPPYLR 271
           I PF +F +++AN AI EAV G   +HI+D     G QW  ++QA+A RA    GPP +R
Sbjct: 133 IAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERADPALGPPEVR 192

Query: 272 ITGIDDSDSAYARGGGLDIVGRRLCNIAQSCCLPFEF--------------------NAV 391
           +TG         R       G RL   A+S  LPF F                     A 
Sbjct: 193 VTGAGADRDTLLR------TGNRLRAFARSIHLPFHFTPLLLSCATTAPHHVAGTSTGAA 246

Query: 392 NAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTSC 571
            AAS       L+    E +AVN    LH     ++   +     L+ VK++SP VVT  
Sbjct: 247 AAASTAAAATGLEFHPDETLAVNCVMFLH-----NLAGHDELAAFLKWVKAMSPAVVTIA 301

Query: 572 --RAGG 583
              AGG
Sbjct: 302 EREAGG 307



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>NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein|
          Length = 554

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 19/191 (9%)
 Frame = +2

Query: 47  EPQPTNSELMSYMHLLYDICPFFKFGYMSANGAIAEAVKGE----NFIHIIDFQIAQGSQ 214
           EP+     L+ +    Y+  P+F F    AN +I + +  E      +HI+D  ++ G Q
Sbjct: 238 EPRFFQKSLLKF----YEFSPWFSFPNNIANASILQVLAEEPNNLRTLHILDIGVSHGVQ 293

Query: 215 WVTMIQALAARASGPPYL-RITGIDDSDSA---------YARGGGLDIVGRRLCNIAQSC 364
           W T ++AL+ R  GPP L R+T ++ S S          ++ G   D     L   AQS 
Sbjct: 294 WPTFLEALSRRPGGPPPLVRLTVVNASSSTENDQNMETPFSIGPCGDTFSSGLLGYAQSL 353

Query: 365 CLPFEFNAV-NAASHEVTLEHLDIRKGEAIAVNFAYQLHH----TPDESVCIENHRDRIL 529
            +  +   + N     +  + +D    E + V   ++LHH     PDE       R   L
Sbjct: 354 NVNLQIKKLDNHPLQTLNAKSVDTSSDETLIVCAQFRLHHLNHNNPDE-------RSEFL 406

Query: 530 RMVKSLSPRVV 562
           ++++ + P+ V
Sbjct: 407 KVLRGMEPKGV 417



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>SYD_PSEHT (Q3IIN7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 592

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 314 GGLDIVGRRLCNIAQSCCLPFEFNAVNAASHEVTLEHLDIRKGE 445
           G ++I+G  L  I +S  LP +FN VN+    +   +LD+R+ E
Sbjct: 90  GEIEILGTELNIINRSEPLPLDFNQVNSEERRLKYRYLDLRRLE 133



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>SYD_COLP3 (Q483C7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 601

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 314 GGLDIVGRRLCNIAQSCCLPFEFNAVNAASHEVTLEHLDIRKGE 445
           GG++++G  L  + +S  LP + N VN+    +   +LD+R+ E
Sbjct: 90  GGIEVLGLELTILNKSAPLPLDSNQVNSEELRLKYRYLDLRRVE 133



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>BACC_BACAM (Q8KWS9) Bacilysin biosynthesis oxidoreductase bacC (EC 1.-.-.-)|
          Length = 254

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 214 LAPLSNLEINDVNKVLTLNSLGYSTIGRHVTKF 116
           +AP+  +E++D NKVL +N  G   + +H  K+
Sbjct: 93  VAPIHEMELSDWNKVLNVNLTGMFLMSKHALKY 125



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>SAHH_GLOVI (Q7NGI6) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 428

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 28/117 (23%), Positives = 45/117 (38%)
 Frame = +2

Query: 110 FFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRITGIDD 289
           FF   Y +    +   ++  N +      +  G  W     AL AR  G   + +T I+ 
Sbjct: 191 FFDNRYGTGQSTLDGIIRATNILLAGKTIVVAGYGWCGKGVALRARGMGANVV-VTEINP 249

Query: 290 SDSAYARGGGLDIVGRRLCNIAQSCCLPFEFNAVNAASHEVTLEHLDIRKGEAIAVN 460
             +  A   GL ++      +A++ CL   F  V    H +  EH  + K  AI  N
Sbjct: 250 VRAIEAAMDGLQVMP-----MAEAACLGDLFITVTGNKHVIRREHFAMMKDGAIVCN 301



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>SYD_VIBCH (Q9KSU0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 591

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 314 GGLDIVGRRLCNIAQSCCLPFEFNAVNAASHEVTLEHLDIRKGE 445
           G ++++ R L  I +S  LP +FN  N+    +   +LD+R+ E
Sbjct: 90  GEVELLARSLEIINRSDVLPLDFNQKNSEEQRLKYRYLDLRRPE 133



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>BACC_BACSU (P39640) Bacilysin biosynthesis oxidoreductase bacC (EC 1.-.-.-)|
          Length = 253

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 214 LAPLSNLEINDVNKVLTLNSLGYSTIGRHVTK 119
           +AP+  +E++D NKVL +N  G   + +H  K
Sbjct: 93  VAPIHEMELSDWNKVLQVNLTGMFLMSKHALK 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,181,922
Number of Sequences: 219361
Number of extensions: 2039868
Number of successful extensions: 4872
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4859
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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