>COL7_CAEEL (P18832) Cuticle collagen 7 precursor|
          Length = 316

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 75  PGPPREAGAV----QPGVPGRVGAVDGEPRRGQGLP 170
           PGPP  AG+     Q G PG  G+     +RG+GLP
Sbjct: 171 PGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLP 206

>MFGM_PIG (P79385) Lactadherin (Milk fat globule-EGF factor 8) (MFG-E8)|
           (MFGM) (Sperm surface protein SP47) (PP47)
          Length = 409

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 46  TGECIKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVG 159
           TG   + +   GH   +  Y  AY D+ V WTE RD G
Sbjct: 322 TGIITQGARDFGHIQYVAAYKVAYSDDGVSWTEYRDQG 359

>GLPK1_SULAC (Q4J9R1) Glycerol kinase 1 (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase 1) (Glycerokinase 1) (GK 1)
          Length = 498

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +1

Query: 58  IKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVGKGFRCVRMV------NNIYLNFDA 213
           I   T +GH  + V  + AYQ   V+    +DVGK F  V  V      NN+ + F A
Sbjct: 360 ISRGTSRGHIARAVLESIAYQVRDVIEVIKKDVGKEFVNVLKVDGGVSKNNLLMQFQA 417

>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 72   RPGPPREAGAVQPGVPGRVGAVDGEP 149
            RPGPP   GA  PG+PG +  V G+P
Sbjct: 994  RPGPPGLPGA--PGLPGIIKGVSGKP 1017

>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 63  ALHRPGPPREAG-AVQPGVPGRVGAVDGEPRRGQGLPLRAHGE 188
           A  R GPP  +G A  PG PG VG   G+  RG+  P    GE
Sbjct: 868 AAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGE 910

>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 63  ALHRPGPPREAG-AVQPGVPGRVGAVDGEPRRGQGLPLRAHGE 188
           A  R GPP  +G A  PG PG VG   G+  RG+  P    GE
Sbjct: 868 AAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGE 910

>MK03_HUMAN (P27361) Mitogen-activated protein kinase 3 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 1) (ERK-1)
           (Insulin-stimulated MAP2 kinase) (MAP kinase 1) (MAPK 1)
           (p44-ERK1) (ERT2) (p44-MAPK) (Microtubule-associated
           protein 2 kinase)
          Length = 379

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  GPPREAGAVQPGVPGRVGAVDGEP 149
           G PR    V PGVPG V  V G+P
Sbjct: 12  GEPRRTEGVGPGVPGEVEMVKGQP 35

>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  PGPPREAGAV-QPGVPGRVGAVDGEPRRGQGLPLRAHG 185
           PGPP EAG    PG PG+ GA DG P  GQ  P   +G
Sbjct: 218 PGPPGEAGPQGPPGSPGQPGA-DGSP--GQPGPKGPNG 252

>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 26.6 bits (57), Expect(2) = 8.3
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -1

Query: 608 QSSDLRIMVP-PHSLQHPLLPRSNADSIARQHTQTPLPH 495
           Q SD+ I  P PH   HP  P          HT TP PH
Sbjct: 13  QYSDIYIHTPHPHPHPHPHTPTHT-----HPHTPTPTPH 46



 Score = 21.6 bits (44), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 508 HHCHTSHTVL 479
           HH HT HT L
Sbjct: 63  HHTHTPHTTL 72

>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A|
           precursor
          Length = 928

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 208 DAFHGDKAHGGVHDGTEVVLWKWCEG 285
           ++FH D AHG ++ G EVVLWK   G
Sbjct: 460 NSFHFD-AHGDLNTGYEVVLWKETNG 484

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 72  RPGPPREAGAVQPGVPGRVGAVDGEPRRGQG 164
           RP   +  G  +PG  G VGA  G P RG G
Sbjct: 414 RPYAKKGPGGARPGTGGPVGARSGGPGRGAG 444

>TMBI1_HUMAN (Q969X1) Transmembrane BAX inhibitor motif-containing protein 1|
           (RECS1 protein homolog)
          Length = 311

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 75  PGPPREAGAVQPGV-PGRVGAVDGEPRRGQGLP 170
           PGPP   G  QP V PG   A  G P+ G G P
Sbjct: 18  PGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHP 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,550,785
Number of Sequences: 219361
Number of extensions: 1387337
Number of successful extensions: 6222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6208
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)