ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal33m06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ544688.1|OSA544688 Oryza sativa (japonica cultivar-group) mRNA for phosphatidylinositol 4-phosphate 5-kinase (pipk1 gene) Length = 2438 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggcag 61 ||||||||| || ||| ||||| || |||||| |||||||||| || |||||||||||| Sbjct: 1720 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggcag 1779 Query: 62 atagctcttgatagcatgttcctggaatcccaatcgattattgactatagcatgctattg 121 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1780 atagctcttgattgtatgttcctggaatcccaatctataattgactatagcatgctattg 1839 Query: 122 ggaatccatttcagagcccctaatcacttgaag 154 |||||||||||| |||| || |||||| ||||| Sbjct: 1840 ggaatccatttccgagctcccaatcacctgaag 1872 Score = 141 bits (71), Expect = 3e-30 Identities = 148/173 (85%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 1966 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 2025 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 2026 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 2085 Query: 365 ccgggcaccggaaggttccgagtgcagctaggggtgaacatgccggcccgagc 417 || ||||| ||||||||||| || |||||||||||||| ||||| || ||||| Sbjct: 2086 ccaggcactggaaggttccgtgttcagctaggggtgaatatgccagctcgagc 2138 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 2212 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 2271 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 2272 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 2331 Query: 590 aaacgatt 597 | |||||| Sbjct: 2332 agacgatt 2339
>emb|AJ439082.1|OSA439082 Oryza sativa partial mRNA for phosphatidylinositol-4-phosphate 5-kinase (PIPK1 gene) Length = 2132 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggcag 61 ||||||||| || ||| ||||| || |||||| |||||||||| || |||||||||||| Sbjct: 1414 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggcag 1473 Query: 62 atagctcttgatagcatgttcctggaatcccaatcgattattgactatagcatgctattg 121 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1474 atagctcttgattgtatgttcctggaatcccaatctataattgactatagcatgctattg 1533 Query: 122 ggaatccatttcagagcccctaatcacttgaag 154 |||||||||||| |||| || |||||| ||||| Sbjct: 1534 ggaatccatttccgagctcccaatcacctgaag 1566 Score = 141 bits (71), Expect = 3e-30 Identities = 148/173 (85%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 1660 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 1719 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 1720 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 1779 Query: 365 ccgggcaccggaaggttccgagtgcagctaggggtgaacatgccggcccgagc 417 || ||||| ||||||||||| || |||||||||||||| ||||| || ||||| Sbjct: 1780 ccaggcactggaaggttccgtgttcagctaggggtgaatatgccagctcgagc 1832 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 1906 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 1965 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 1966 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 2025 Query: 590 aaacgatt 597 | |||||| Sbjct: 2026 agacgatt 2033
>dbj|AK065869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045E16, full insert sequence Length = 1978 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggcag 61 ||||||||| || ||| ||||| || |||||| |||||||||| || |||||||||||| Sbjct: 1123 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggcag 1182 Query: 62 atagctcttgatagcatgttcctggaatcccaatcgattattgactatagcatgctattg 121 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1183 atagctcttgattgtatgttcctggaatcccaatctataattgactatagcatgctattg 1242 Query: 122 ggaatccatttcagagcccctaatcacttgaag 154 |||||||||||| |||| || |||||| ||||| Sbjct: 1243 ggaatccatttccgagctcccaatcacctgaag 1275 Score = 141 bits (71), Expect = 3e-30 Identities = 148/173 (85%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 1369 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 1428 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 1429 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 1488 Query: 365 ccgggcaccggaaggttccgagtgcagctaggggtgaacatgccggcccgagc 417 || ||||| ||||||||||| || |||||||||||||| ||||| || ||||| Sbjct: 1489 ccaggcactggaaggttccgtgttcagctaggggtgaatatgccagctcgagc 1541 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 1615 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 1674 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 1675 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 1734 Query: 590 aaacgatt 597 | |||||| Sbjct: 1735 agacgatt 1742
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 143 bits (72), Expect = 8e-31 Identities = 96/104 (92%) Strand = Plus / Plus Query: 51 ttttcaggcagatagctcttgatagcatgttcctggaatcccaatcgattattgactata 110 ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct: 25173 ttttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactata 25232 Query: 111 gcatgctattgggaatccatttcagagcccctaatcacttgaag 154 ||||||||||||||||||||||| |||| || |||||| ||||| Sbjct: 25233 gcatgctattgggaatccatttccgagctcccaatcacctgaag 25276 Score = 107 bits (54), Expect = 4e-20 Identities = 116/136 (85%), Gaps = 3/136 (2%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 25564 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 25623 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 25624 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 25683 Query: 365 ccgggcaccggaaggt 380 || ||||| ||||||| Sbjct: 25684 ccaggcactggaaggt 25699 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 26554 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 26613 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 26614 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 26673 Query: 590 aaacgatt 597 | |||||| Sbjct: 26674 agacgatt 26681 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggca 60 ||||||||| || ||| ||||| || |||||| |||||||||| || ||||||||||| Sbjct: 24607 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggca 24665 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 377 aggttccgagtgcagctaggggtgaacatgccggcccgagc 417 |||||||| || |||||||||||||| ||||| || ||||| Sbjct: 26440 aggttccgtgttcagctaggggtgaatatgccagctcgagc 26480
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 143 bits (72), Expect = 8e-31 Identities = 96/104 (92%) Strand = Plus / Plus Query: 51 ttttcaggcagatagctcttgatagcatgttcctggaatcccaatcgattattgactata 110 ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct: 27893011 ttttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactata 27893070 Query: 111 gcatgctattgggaatccatttcagagcccctaatcacttgaag 154 ||||||||||||||||||||||| |||| || |||||| ||||| Sbjct: 27893071 gcatgctattgggaatccatttccgagctcccaatcacctgaag 27893114 Score = 107 bits (54), Expect = 4e-20 Identities = 116/136 (85%), Gaps = 3/136 (2%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 27893402 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 27893461 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 27893462 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 27893521 Query: 365 ccgggcaccggaaggt 380 || ||||| ||||||| Sbjct: 27893522 ccaggcactggaaggt 27893537 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 27894392 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 27894451 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 27894452 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 27894511 Query: 590 aaacgatt 597 | |||||| Sbjct: 27894512 agacgatt 27894519 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggca 60 ||||||||| || ||| ||||| || |||||| |||||||||| || ||||||||||| Sbjct: 27892445 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggca 27892503 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 377 aggttccgagtgcagctaggggtgaacatgccggcccgagc 417 |||||||| || |||||||||||||| ||||| || ||||| Sbjct: 27894278 aggttccgtgttcagctaggggtgaatatgccagctcgagc 27894318 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gcaggagtacaacgcgtcca 512 |||||||||||||||||||| Sbjct: 10091300 gcaggagtacaacgcgtcca 10091319
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 143 bits (72), Expect = 8e-31 Identities = 96/104 (92%) Strand = Plus / Plus Query: 51 ttttcaggcagatagctcttgatagcatgttcctggaatcccaatcgattattgactata 110 ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct: 27984335 ttttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactata 27984394 Query: 111 gcatgctattgggaatccatttcagagcccctaatcacttgaag 154 ||||||||||||||||||||||| |||| || |||||| ||||| Sbjct: 27984395 gcatgctattgggaatccatttccgagctcccaatcacctgaag 27984438 Score = 107 bits (54), Expect = 4e-20 Identities = 116/136 (85%), Gaps = 3/136 (2%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 27984726 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 27984785 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 27984786 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 27984845 Query: 365 ccgggcaccggaaggt 380 || ||||| ||||||| Sbjct: 27984846 ccaggcactggaaggt 27984861 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 27985716 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 27985775 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 27985776 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 27985835 Query: 590 aaacgatt 597 | |||||| Sbjct: 27985836 agacgatt 27985843 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggca 60 ||||||||| || ||| ||||| || |||||| |||||||||| || ||||||||||| Sbjct: 27983769 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggca 27983827 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 377 aggttccgagtgcagctaggggtgaacatgccggcccgagc 417 |||||||| || |||||||||||||| ||||| || ||||| Sbjct: 27985602 aggttccgtgttcagctaggggtgaatatgccagctcgagc 27985642 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gcaggagtacaacgcgtcca 512 |||||||||||||||||||| Sbjct: 10089421 gcaggagtacaacgcgtcca 10089440
>dbj|AK099707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K17, full insert sequence Length = 1624 Score = 143 bits (72), Expect = 8e-31 Identities = 96/104 (92%) Strand = Plus / Plus Query: 51 ttttcaggcagatagctcttgatagcatgttcctggaatcccaatcgattattgactata 110 ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct: 985 ttttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactata 1044 Query: 111 gcatgctattgggaatccatttcagagcccctaatcacttgaag 154 ||||||||||||||||||||||| |||| || |||||| ||||| Sbjct: 1045 gcatgctattgggaatccatttccgagctcccaatcacctgaag 1088 Score = 141 bits (71), Expect = 3e-30 Identities = 148/173 (85%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 248 tcaaagggatttcttctagttgctc---acgaaccaggtacaacagtaggcggttcccac 304 |||||||||||||| ||||||||| | || |||||| || ||||| | ||||| ||| Sbjct: 1182 tcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcac 1241 Query: 305 atcagaggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgttctg 364 || ||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| || Sbjct: 1242 ataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttg 1301 Query: 365 ccgggcaccggaaggttccgagtgcagctaggggtgaacatgccggcccgagc 417 || ||||| ||||||||||| || |||||||||||||| ||||| || ||||| Sbjct: 1302 ccaggcactggaaggttccgtgttcagctaggggtgaatatgccagctcgagc 1354 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 470 taccttggcatcatagacatactgcaggagtacaacgcgtccaagagggtggagcatgcg 529 |||||||| ||||| |||||||| || ||||| || | |||||| || || |||||||| Sbjct: 1428 taccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgct 1487 Query: 530 gtcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcg 589 |||||||| || || ||||||||||| ||||||||| | |||||||| || ||||||||| Sbjct: 1488 gtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcg 1547 Query: 590 aaacgatt 597 | |||||| Sbjct: 1548 agacgatt 1555 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 2 cttgacctagcacatgcatttcatgtcgataaatcatggagggaagcgcttttcaggca 60 ||||||||| || ||| ||||| || |||||| |||||||||| || ||||||||||| Sbjct: 418 cttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggca 476
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 109 bits (55), Expect = 1e-20 Identities = 97/111 (87%) Strand = Plus / Plus Query: 251 aagggatttcttctagttgctcacgaaccaggtacaacagtaggcggttcccacatcaga 310 ||||||||| | || |||||||| || ||||| || ||||| || ||||||||||| ||| Sbjct: 74432 aagggatttttgcttgttgctcatgagccaggcactacagttggtggttcccacataaga 74491 Query: 311 ggaagcatggttagagcatcagaaggtggttacgaagaagtcgatcttgtt 361 |||||||||||||||||||| |||| |||||| |||||||| ||||||||| Sbjct: 74492 ggaagcatggttagagcatcggaagctggttatgaagaagttgatcttgtt 74542 Score = 89.7 bits (45), Expect = 1e-14 Identities = 123/149 (82%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 ||||||||||| || || || |||||||| || ||||||||| | ||||||||||| | Sbjct: 75071 gaggagtacgatgttgttctttaccttggtattatagacatattacaggagtacaatatg 75130 Query: 509 tccaagagggtggagcatgcggtcaaatctctcaagttcgaccctctctcgatatcatcc 568 || || ||||| |||||||| |||||||| ||||||||||| || || || |||||| | Sbjct: 75131 tcaaaaagggtcgagcatgcagtcaaatcactcaagttcgatcccctttcaatatcagct 75190 Query: 569 gttgatccgaacttgtattcgaaacgatt 597 ||||||||||| | ||| || |||||||| Sbjct: 75191 gttgatccgaattcgtactcaaaacgatt 75219 Score = 83.8 bits (42), Expect = 6e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 51 ttttcaggcagatagctcttgatagcatgttcctggaatcccaatcgattattgactata 110 |||||||||| ||| | |||||| | |||||| |||||||||| || || ||||| |||| Sbjct: 73751 ttttcaggcaaatatcacttgattgtatgttcttggaatcccagtctatcattgattata 73810 Query: 111 gcatgctattgggaatccatttcagagcccctaatcacttgaagac 156 ||||||| ||||| |||||||| ||||| ||| ||||| ||||||| Sbjct: 73811 gcatgctcttggggatccattttagagctccttatcacctgaagac 73856
>ref|XM_468457.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2868 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 2560 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 2619 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2620 tcaaagaagatagagcatgccgtcaa 2645
>ref|XM_507061.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1119_A01.20-1 patrial mRNA Length = 3178 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 2650 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 2709 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2710 tcaaagaagatagagcatgccgtcaa 2735
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 35326694 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 35326635 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 35326634 tcaaagaagatagagcatgccgtcaa 35326609
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 77028 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 76969 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 76968 tcaaagaagatagagcatgccgtcaa 76943
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 138744 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 138685 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 138684 tcaaagaagatagagcatgccgtcaa 138659
>dbj|AK101621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J21, full insert sequence Length = 2731 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 2042 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 2101 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2102 tcaaagaagatagagcatgccgtcaa 2127
>dbj|AK073423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044H07, full insert sequence Length = 2868 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 2560 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 2619 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2620 tcaaagaagatagagcatgccgtcaa 2645
>dbj|AK065823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041G06, full insert sequence Length = 2918 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||| | Sbjct: 2231 gaggtgtacgacgtggtcctttacctgggtatcatagacatattgcaggagtacaacatg 2290 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2291 tcaaagaagatagagcatgccgtcaa 2316
>dbj|AK072145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123O13, full insert sequence Length = 3452 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 |||| |||||||||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 2649 gaggtgtacgacgtggtcctttacctgggtttcatagacatattgcaggagtacaacatg 2708 Query: 509 tccaagagggtggagcatgcggtcaa 534 || |||| | | |||||||| ||||| Sbjct: 2709 tcaaagaagatagagcatgccgtcaa 2734
>gb|AY359577.1| Zea mays B73 ethylene receptor (ERS14) gene, complete cds Length = 7685 Score = 58.0 bits (29), Expect = 3e-05 Identities = 120/149 (80%), Gaps = 1/149 (0%) Strand = Plus / Minus Query: 449 gaggagtacgacgtggtgctctaccttggcatcatagacatactgcaggagtacaacgcg 508 ||||||||||| || || || |||||||| || |||||||| ||||||||| || | Sbjct: 155 gaggagtacgatgttgttctttaccttggtattttagacatattgcaggagttcagtaca 96 Query: 509 tccaagagggtggagcatgcggtcaaatctctcaagttcgaccctctctcgatatcatcc 568 || || ||||| |||||||| |||||||| |||||||||| ||| || || |||||| Sbjct: 95 tcaaaaagggtcgagcatgcagtcaaatcactcaagttcgtccccct-tcaatatcaggt 37 Query: 569 gttgatccgaacttgtattcgaaacgatt 597 ||||||||||| | ||||| |||||||| Sbjct: 36 gttgatccgaattcttattcaaaacgatt 8
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 409 ggcccgagcccgaaaattgctggaaagcacg 439 |||||||||||| ||||||||||||||||| Sbjct: 2349290 ggcccgagcccgggaattgctggaaagcacg 2349260
>gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0041J18, complete sequence Length = 129523 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 531 tcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcga 590 ||||||| || |||||||| || || ||| ||||| | ||||||||||| |||||||| | Sbjct: 55012 tcaaatcactgaagttcgatccactttcggtatcagctgttgatccgaatttgtattcaa 54953 Query: 591 aacgatt 597 |||||| Sbjct: 54952 tacgatt 54946
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 531 tcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcga 590 ||||||| || |||||||| || || ||| ||||| | ||||||||||| |||||||| | Sbjct: 16527575 tcaaatcactgaagttcgatccactttcggtatcagctgttgatccgaatttgtattcaa 16527516 Query: 591 aacgatt 597 |||||| Sbjct: 16527515 tacgatt 16527509
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Minus Query: 531 tcaaatctctcaagttcgaccctctctcgatatcatccgttgatccgaacttgtattcga 590 ||||||| || |||||||| || || ||| ||||| | ||||||||||| |||||||| | Sbjct: 16618247 tcaaatcactgaagttcgatccactttcggtatcagctgttgatccgaatttgtattcaa 16618188 Query: 591 aacgatt 597 |||||| Sbjct: 16618187 tacgatt 16618181
>gb|AY112486.1| Zea mays CL53426_1 mRNA sequence Length = 586 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 476 ggcatcatagacatactgcaggagtacaac 505 |||||||| ||||||||||| ||||||||| Sbjct: 571 ggcatcattgacatactgcaagagtacaac 542
>ref|NM_111827.2| Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase AT3G09920 transcript variant AT3G09920.1 mRNA, complete cds Length = 2807 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 457 cgacgtggtgctctaccttggcatcatagacat 489 |||||| || |||||||||||||| |||||||| Sbjct: 2498 cgacgtcgtactctaccttggcattatagacat 2530
>ref|NM_001035589.1| Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase AT3G09920 transcript variant AT3G09920.2 mRNA, complete cds Length = 2866 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 457 cgacgtggtgctctaccttggcatcatagacat 489 |||||| || |||||||||||||| |||||||| Sbjct: 2557 cgacgtcgtactctaccttggcattatagacat 2589
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequence Length = 72902 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 457 cgacgtggtgctctaccttggcatcatagacat 489 |||||| || |||||||||||||| |||||||| Sbjct: 26110 cgacgtcgtactctaccttggcattatagacat 26142
>emb|BX033159.1|CNS08XQZ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA49BH09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 cggacgcggtcgaggagtacg 458 ||||||||||||||||||||| Sbjct: 154 cggacgcggtcgaggagtacg 174
>emb|BX025511.1|CNS08RUJ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA39AE07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 620 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 cggacgcggtcgaggagtacg 458 ||||||||||||||||||||| Sbjct: 147 cggacgcggtcgaggagtacg 167
>gb|AY120742.1| Arabidopsis thaliana putative phosphatidylinositol-4-phosphate 5-kinase (At3g09920) mRNA, complete cds Length = 2798 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 457 cgacgtggtgctctaccttggcatcatagacat 489 |||||| || |||||||||||||| |||||||| Sbjct: 2499 cgacgtcgtactctaccttggcattatagacat 2531
>emb|AJ810853.1| Arabidopsis thaliana mRNA for putative phosphatidylinositol-4-phosphate 5-kinase (At3g09920 gene), genomic RNA Length = 2514 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 457 cgacgtggtgctctaccttggcatcatagacat 489 |||||| || |||||||||||||| |||||||| Sbjct: 2309 cgacgtcgtactctaccttggcattatagacat 2341
>ref|XM_308075.2| Anopheles gambiae str. PEST ENSANGP00000019777 (ENSANGG00000017288), partial mRNA Length = 1056 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 cggacgcggtcgaggagtacg 458 ||||||||||||||||||||| Sbjct: 107 cggacgcggtcgaggagtacg 127
>emb|AL805958.8| Mouse DNA sequence from clone RP23-179F9 on chromosome 2, complete sequence Length = 198627 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 tggttagagcatcagaaggtg 338 ||||||||||||||||||||| Sbjct: 114461 tggttagagcatcagaaggtg 114441
>gb|AE017135.1| Yersinia pestis biovar Medievalis str. 91001 section 9 of 16 of the complete genome Length = 291326 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tttcttctagttgctcacga 276 |||||||||||||||||||| Sbjct: 156562 tttcttctagttgctcacga 156581
>gb|AC101921.8| Mus musculus chromosome 15, clone RP24-176G17, complete sequence Length = 166654 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tgctctaccttggcatcata 484 |||||||||||||||||||| Sbjct: 76145 tgctctaccttggcatcata 76126
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tttcttctagttgctcacga 276 |||||||||||||||||||| Sbjct: 2090456 tttcttctagttgctcacga 2090437
>gb|AC099594.6| Mus musculus chromosome 15, clone RP23-458G7, complete sequence Length = 220242 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tgctctaccttggcatcata 484 |||||||||||||||||||| Sbjct: 187429 tgctctaccttggcatcata 187410
>gb|U55366.1| Caenorhabditis elegans cosmid F41F3, complete sequence Length = 26238 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 atcatagacatactgcaggagtac 502 ||||||||||||||| |||||||| Sbjct: 3899 atcatagacatactgtaggagtac 3876
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tttcttctagttgctcacga 276 |||||||||||||||||||| Sbjct: 2773805 tttcttctagttgctcacga 2773824
>emb|AJ414152.1| Yersinia pestis strain CO92 complete genome; segment 12/20 Length = 313050 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tttcttctagttgctcacga 276 |||||||||||||||||||| Sbjct: 143802 tttcttctagttgctcacga 143821
>emb|AL645644.8| Mouse DNA sequence from clone RP23-400O5 on chromosome 11 Contains the 3' end of the gene for a novel protein (A530001H01), the 5' end of the Myh10 gene for non-muscle myosin heavy chain 10 and a CpG island, complete sequence Length = 195322 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggattacatctgcaatggat 211 |||||||||||||||||||| Sbjct: 70458 ggattacatctgcaatggat 70477
>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078C05, complete sequence Length = 122116 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gcaggagtacaacgcgtcca 512 |||||||||||||||||||| Sbjct: 36921 gcaggagtacaacgcgtcca 36940
>gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, complete sequence Length = 147392 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 301 ccacatcagaggaagcatggttagagca 328 ||||||| ||||||||||||||||||| Sbjct: 85052 ccacatccaaggaagcatggttagagca 85025
>gb|AC006557.2|AC006557 Homo sapiens chromosome 18, clone hRPK.411_B_10, complete sequence Length = 154589 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 agagcatcagaaggtggtta 342 |||||||||||||||||||| Sbjct: 61654 agagcatcagaaggtggtta 61635
>gb|U50903.1|YPU50903 Yersinia pestis putative yfeABCD regulator (yfeE) gene, complete cds Length = 710 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tttcttctagttgctcacga 276 |||||||||||||||||||| Sbjct: 560 tttcttctagttgctcacga 541
>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete sequence Length = 182424 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 agagcatcagaaggtggtta 342 |||||||||||||||||||| Sbjct: 29374 agagcatcagaaggtggtta 29393 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,054,776 Number of Sequences: 3902068 Number of extensions: 4054776 Number of successful extensions: 65371 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65062 Number of HSP's gapped (non-prelim): 302 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
