ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34a13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
2dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
3dbj|AK105952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
4gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
8emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310... 52 0.001
9emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260... 52 0.001
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.090
11gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 44 0.36
12gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.36
13dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.36
14gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.4
15emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 1.4
16dbj|D13509.1|MUSPAPA Mus musculus mRNA for PAP homologous protei... 42 1.4
17ref|XM_464134.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
18ref|NM_189460.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
19gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 40 5.6
20gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.6
21gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.6
22gb|AY581256.1| Oryza sativa (japonica cultivar-group) induced pr... 40 5.6
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
24gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.6
25gb|AY077726.1| Neisseria meningitidis strain C311#3-19E class I ... 40 5.6
26emb|AL139112.9| Human DNA sequence from clone GS1-103B18 on chro... 40 5.6
27emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.6
28emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.6
29gb|AF126429.1| Streptomyces venezuelae JadJ (jadJ), jadomycin po... 40 5.6
30dbj|AB206578.1| Oryza sativa (japonica cultivar-group) OsPCL1 ge... 40 5.6
31gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 5.6
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36ref|XM_393141.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 5.6
37dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
39dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
40gb|AE005069.1| Halobacterium sp. NRC-1 section 100 of 170 of the... 40 5.6
41dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
42emb|X80774.1|SGPREPG Streptomyces ghanaensis plasmid DNA for prg... 40 5.6
43dbj|AK070050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
44gb|U28382.1|SVU28382 Streptomyces venezuelae bifunctional cyclas... 40 5.6
45emb|CT574563.2| Pan troglodytes chromosome X clone CH251-7J11 ma... 40 5.6
46gb|AF183408.1| Microcystis aeruginosa PCC 7806 DNA polymerase II... 40 5.6
47emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388... 40 5.6
48gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.6
49dbj|AB071808.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 5.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  129 bits (65), Expect = 8e-27
 Identities = 183/220 (83%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                            
Query: 48       ggtgtcggtgccgaggatggcgttc-acttcnagg-cgcggacctcgaactgccgcgccg 105
                |||| ||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||||   
Sbjct: 16924005 ggtggcggtgccgaggatggtgttccacttccagggcgccgacctcgacctgccgcggga 16924064

                                                                            
Query: 106      gaactacgtcctggacgacccgaggagggggagcttgtgcatcctcctggccgactccgg 165
                ||||||||||||||| || |   ||||||||  | ||||| ||||||| | |||||||||
Sbjct: 16924065 gaactacgtcctggaggatcaccggagggggcacctgtgcgtcctcctcggcgactccgg 16924124

                                                                            
Query: 166      ggactcgggcgccacgatcggcaacttcgtgcagcaggacatgcgcgtgctctacgattt 225
                 |||   ||||| |||||||||||||||||||||||||||||||||||| | |||||  |
Sbjct: 16924125 cgacgacggcgcgacgatcggcaacttcgtgcagcaggacatgcgcgtggtgtacgacct 16924184

                                                        
Query: 226      ggaggcggagaccctgtcgttcgctccggcgcagtgctga 265
                ||||  ||||||  |||||||||| |||| | ||||||||
Sbjct: 16924185 ggagcgggagacgttgtcgttcgccccggtggagtgctga 16924224
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  129 bits (65), Expect = 8e-27
 Identities = 183/220 (83%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    ggtgtcggtgccgaggatggcgttc-acttcnagg-cgcggacctcgaactgccgcgccg 105
             |||| ||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||||   
Sbjct: 53818 ggtggcggtgccgaggatggtgttccacttccagggcgccgacctcgacctgccgcggga 53877

                                                                         
Query: 106   gaactacgtcctggacgacccgaggagggggagcttgtgcatcctcctggccgactccgg 165
             ||||||||||||||| || |   ||||||||  | ||||| ||||||| | |||||||||
Sbjct: 53878 gaactacgtcctggaggatcaccggagggggcacctgtgcgtcctcctcggcgactccgg 53937

                                                                         
Query: 166   ggactcgggcgccacgatcggcaacttcgtgcagcaggacatgcgcgtgctctacgattt 225
              |||   ||||| |||||||||||||||||||||||||||||||||||| | |||||  |
Sbjct: 53938 cgacgacggcgcgacgatcggcaacttcgtgcagcaggacatgcgcgtggtgtacgacct 53997

                                                     
Query: 226   ggaggcggagaccctgtcgttcgctccggcgcagtgctga 265
             ||||  ||||||  |||||||||| |||| | ||||||||
Sbjct: 53998 ggagcgggagacgttgtcgttcgccccggtggagtgctga 54037
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>dbj|AK105952.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D02, full
            insert sequence
          Length = 1449

 Score =  129 bits (65), Expect = 8e-27
 Identities = 183/220 (83%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtgtcggtgccgaggatggcgttc-acttcnagg-cgcggacctcgaactgccgcgccg 105
            |||| ||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||||   
Sbjct: 1175 ggtggcggtgccgaggatggtgttccacttccagggcgccgacctcgacctgccgcggga 1234

                                                                        
Query: 106  gaactacgtcctggacgacccgaggagggggagcttgtgcatcctcctggccgactccgg 165
            ||||||||||||||| || |   ||||||||  | ||||| ||||||| | |||||||||
Sbjct: 1235 gaactacgtcctggaggatcaccggagggggcacctgtgcgtcctcctcggcgactccgg 1294

                                                                        
Query: 166  ggactcgggcgccacgatcggcaacttcgtgcagcaggacatgcgcgtgctctacgattt 225
             |||   ||||| |||||||||||||||||||||||||||||||||||| | |||||  |
Sbjct: 1295 cgacgacggcgcgacgatcggcaacttcgtgcagcaggacatgcgcgtggtgtacgacct 1354

                                                    
Query: 226  ggaggcggagaccctgtcgttcgctccggcgcagtgctga 265
            ||||  ||||||  |||||||||| |||| | ||||||||
Sbjct: 1355 ggagcgggagacgttgtcgttcgccccggtggagtgctga 1394
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>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0007A06, complete sequence
          Length = 148029

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                      
Query: 182   atcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
             |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26988 atcggcaacttcatgcagcaggacatgcgcgtgctctacga 26948
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                         
Query: 182      atcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
                |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17991661 atcggcaacttcatgcagcaggacatgcgcgtgctctacga 17991621
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 181      gatcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
                ||||||||||| |  ||||||| |||||||||||||||||||
Sbjct: 24247464 gatcggcaactaccagcagcagaacatgcgcgtgctctacga 24247505



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 27       gggcgcgtcggcggcgacgg 46
                ||||||||||||||||||||
Sbjct: 26189722 gggcgcgtcggcggcgacgg 26189741
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 181      gatcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
                ||||||||||| |  ||||||| |||||||||||||||||||
Sbjct: 24175670 gatcggcaactaccagcagcagaacatgcgcgtgctctacga 24175711



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 27       gggcgcgtcggcggcgacgg 46
                ||||||||||||||||||||
Sbjct: 26117898 gggcgcgtcggcggcgacgg 26117917
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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 181    gatcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
              ||||||||||| |  ||||||| |||||||||||||||||||
Sbjct: 132155 gatcggcaactaccagcagcagaacatgcgcgtgctctacga 132196
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>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135793

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 181   gatcggcaacttcgtgcagcaggacatgcgcgtgctctacga 222
             ||||||||||| |  ||||||| |||||||||||||||||||
Sbjct: 24238 gatcggcaactaccagcagcagaacatgcgcgtgctctacga 24279
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 36      ggcggcgacggtggtgtcggtgc 58
               |||||||||||||||||||||||
Sbjct: 3317993 ggcggcgacggtggtgtcggtgc 3318015
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 260     tgctgatgcattcgaccgacct 281
               ||||||||||||||||||||||
Sbjct: 1267092 tgctgatgcattcgaccgacct 1267113
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 80      ggcgcggacctcgaactgccgcgccg 105
               ||||||| ||||||||||||||||||
Sbjct: 4843242 ggcgcggccctcgaactgccgcgccg 4843217
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 53      cggtgccgaggatggcgttcac 74
               ||||||||||||||||||||||
Sbjct: 2945758 cggtgccgaggatggcgttcac 2945737
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 29      gcgcgtcggcggcgacggtgg 49
               |||||||||||||||||||||
Sbjct: 1678678 gcgcgtcggcggcgacggtgg 1678698
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    cgagggcgcgtcggcggcgac 44
             |||||||||||||||||||||
Sbjct: 78604 cgagggcgcgtcggcggcgac 78624
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>dbj|D13509.1|MUSPAPA Mus musculus mRNA for PAP homologous protein, complete cds
          Length = 745

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   tcccccgggctgaggaattcg 21
           |||||||||||||||||||||
Sbjct: 573 tcccccgggctgaggaattcg 553
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>ref|XM_464134.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  cgtcggcggcgacggtggtg 51
           ||||||||||||||||||||
Sbjct: 134 cgtcggcggcgacggtggtg 153
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>ref|NM_189460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  gcgcgtcggcggcgacggtg 48
           ||||||||||||||||||||
Sbjct: 188 gcgcgtcggcggcgacggtg 207
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>gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete
              sequence
          Length = 273275

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 357    aggatttaggattggctaataaaa 380
              |||||||||||||| |||||||||
Sbjct: 147241 aggatttaggattgtctaataaaa 147264
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 31      gcgtcggcggcgacggtggt 50
               ||||||||||||||||||||
Sbjct: 3734059 gcgtcggcggcgacggtggt 3734040
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      agggcgcgtcggcggcgacg 45
               ||||||||||||||||||||
Sbjct: 1003534 agggcgcgtcggcggcgacg 1003553
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>gb|AY581256.1| Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA,
           complete cds
          Length = 1243

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  gcgcgtcggcggcgacggtg 48
           ||||||||||||||||||||
Sbjct: 405 gcgcgtcggcggcgacggtg 424
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 36      ggcggcgacggtggtgtcggtgccgagg 63
               |||| ||||||||||| |||||||||||
Sbjct: 7804445 ggcgacgacggtggtgacggtgccgagg 7804472
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     tcgggcgccacgatcggcaa 189
               ||||||||||||||||||||
Sbjct: 4140969 tcgggcgccacgatcggcaa 4140950
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>gb|AY077726.1| Neisseria meningitidis strain C311#3-19E class I pilin (pilE) gene,
           complete cds
          Length = 495

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 33  gtcggcggcgacggtggtgtcggtgccg 60
           ||||||||||||||||  ||||||||||
Sbjct: 429 gtcggcggcgacggtgtcgtcggtgccg 402
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>emb|AL139112.9| Human DNA sequence from clone GS1-103B18 on chromosome Xq27.1-27.3
            Contains a cytochrome c (CYCS) pseudogene, complete
            sequence
          Length = 95356

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  tgtatgtgtgtatcaaaaaa 300
            ||||||||||||||||||||
Sbjct: 3892 tgtatgtgtgtatcaaaaaa 3873
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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gcgtcggcggcgacggtggt 50
              ||||||||||||||||||||
Sbjct: 274165 gcgtcggcggcgacggtggt 274146
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>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14
          Length = 308050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gcgtcggcggcgacggtggt 50
              ||||||||||||||||||||
Sbjct: 252363 gcgtcggcggcgacggtggt 252344
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>gb|AF126429.1| Streptomyces venezuelae JadJ (jadJ), jadomycin polyketide synthase
            cyclase (jadI), jadomycin polyketide ketosynthase (jadA),
            chain length determinant, acyl carrier protein (acp),
            ketoreductase, and bifunctional cyclase/dehydrase genes,
            complete cds
          Length = 7064

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 38   cggcgacggtggtgtcggtgccgaggat 65
            |||||||||||| ||||| |||||||||
Sbjct: 6889 cggcgacggtggcgtcggcgccgaggat 6862
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>dbj|AB206578.1| Oryza sativa (japonica cultivar-group) OsPCL1 gene for putative
            transcription factor, complete cds
          Length = 4700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   gcgcgtcggcggcgacggtg 48
            ||||||||||||||||||||
Sbjct: 2098 gcgcgtcggcggcgacggtg 2117
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 33    gtcggcggcgacggtggtgtcggtgccg 60
             ||||||||||||||||  ||||||||||
Sbjct: 23263 gtcggcggcgacggtgtcgtcggtgccg 23290
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 21       ggacgagggcgcgtcggcggcgac 44
                ||||||||||||| ||||||||||
Sbjct: 25468533 ggacgagggcgcggcggcggcgac 25468556
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 36      ggcggcgacggtggtgtcggtgccgagg 63
               |||| ||||||||||| |||||||||||
Sbjct: 7802280 ggcgacgacggtggtgacggtgccgagg 7802307
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      cgtcggcggcgacggtggtg 51
               ||||||||||||||||||||
Sbjct: 2444552 cgtcggcggcgacggtggtg 2444571
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 29       gcgcgtcggcggcgacggtg 48
                ||||||||||||||||||||
Sbjct: 42867469 gcgcgtcggcggcgacggtg 42867450
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>ref|XM_393141.2| PREDICTED: Apis mellifera similar to ENSANGP00000008196
           (LOC409643), mRNA
          Length = 1576

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gtcggtgccgaggatggcgt 70
           ||||||||||||||||||||
Sbjct: 405 gtcggtgccgaggatggcgt 386
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518C01
          Length = 173555

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    gcgcgtcggcggcgacggtg 48
             ||||||||||||||||||||
Sbjct: 61203 gcgcgtcggcggcgacggtg 61184
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      agggcgcgtcggcggcgacg 45
               ||||||||||||||||||||
Sbjct: 4268244 agggcgcgtcggcggcgacg 4268225
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>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0019I19
          Length = 164483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     ggacgagggcgcgtcggcggcgac 44
              ||||||||||||| ||||||||||
Sbjct: 142542 ggacgagggcgcggcggcggcgac 142565
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>gb|AE005069.1| Halobacterium sp. NRC-1 section 100 of 170 of the complete genome
          Length = 10869

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tcggcggcgacggtggtgtc 53
           ||||||||||||||||||||
Sbjct: 255 tcggcggcgacggtggtgtc 236
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>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0064G16
          Length = 166453

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cgtcggcggcgacggtggtg 51
             ||||||||||||||||||||
Sbjct: 60473 cgtcggcggcgacggtggtg 60492
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>emb|X80774.1|SGPREPG Streptomyces ghanaensis plasmid DNA for prg, traR, spdB3, spdB2,
            traB, rep genes and orf106, orf80, orf73, orf193, orf141
          Length = 12208

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   cggcggcgacggtggtgtcg 54
            ||||||||||||||||||||
Sbjct: 8561 cggcggcgacggtggtgtcg 8542
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>dbj|AK070050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040I08, full
           insert sequence
          Length = 1583

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 36  ggcggcgacggtggtgtcggtgccgagg 63
           |||| ||||||||||| |||||||||||
Sbjct: 218 ggcgacgacggtggtgacggtgccgagg 191
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>gb|U28382.1|SVU28382 Streptomyces venezuelae bifunctional cyclase/dehydrase gene,
           partial cds; C-16 hydroxylase gene, complete cds; and
           C-5 anthrone oxidase gene, partial cds
          Length = 2244

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 38  cggcgacggtggtgtcggtgccgaggat 65
           |||||||||||| ||||| |||||||||
Sbjct: 250 cggcgacggtggcgtcggcgccgaggat 223
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>emb|CT574563.2| Pan troglodytes chromosome X clone CH251-7J11 map Xq28, complete sequence
          Length = 204138

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    tgtatgtgtgtatcaaaaaa 300
              ||||||||||||||||||||
Sbjct: 201889 tgtatgtgtgtatcaaaaaa 201870
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>gb|AF183408.1| Microcystis aeruginosa PCC 7806 DNA polymerase III beta subunit (dnaN)
             gene, partial cds; microcystin synthetase gene cluster,
             complete sequence; Uma1 (uma1), Uma2 (uma2), Uma3 (uma3),
             Uma4 (uma4), and Uma5 (uma5) genes, complete cds; and Uma6
             (uma6) gene, partial cds
          Length = 63626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   taaaatgaccaatgttttgt 395
             ||||||||||||||||||||
Sbjct: 63334 taaaatgaccaatgttttgt 63353
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>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gggcgcgtcggcggcgacgg 46
             ||||||||||||||||||||
Sbjct: 79960 gggcgcgtcggcggcgacgg 79979
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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 36    ggcggcgacggtggtgtcggtgccgagg 63
             |||| ||||||||||| |||||||||||
Sbjct: 49687 ggcgacgacggtggtgacggtgccgagg 49660
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>dbj|AB071808.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
           factor PCF8, partial cds
          Length = 1403

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gggcgcgtcggcggcgacgg 46
           ||||||||||||||||||||
Sbjct: 228 gggcgcgtcggcggcgacgg 247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,105,570
Number of Sequences: 3902068
Number of extensions: 3105570
Number of successful extensions: 57970
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56591
Number of HSP's gapped (non-prelim): 1373
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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