>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 134  PPGPRAHVPLPQGR*LPRDRRGHRQLGD 217
            P GPR H+ +P+ + L  D+ G +QLGD
Sbjct: 1650 PQGPRLHIDIPRVQLLIEDKEGIKQLGD 1677

>DAPF_BACTN (Q8AAB7) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 267

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +3

Query: 186 EIDVDIGSSAIATAILHLALGAVTSVTIDMGFLVESQSEEELPEKLFGAVRIAQMEMGSA 365
           EI +D   S I    LH+  G VT+VT+DMG  +E+++ +   +  F + R++       
Sbjct: 96  EITLDT-RSGIKVLKLHVEGGKVTAVTVDMGSPLETEAVDFGDQFPFQSTRVSMGNPHLV 154

Query: 366 KYVETATE 389
            +VE  T+
Sbjct: 155 TFVEDITQ 162

>TIG_HELPY (P56420) Trigger factor (TF)|
          Length = 451

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 26/85 (30%), Positives = 40/85 (47%)
 Frame = +3

Query: 135 LLGRALTCRYHKGDDYLEIDVDIGSSAIATAILHLALGAVTSVTIDMGFLVESQSEEELP 314
           L+G     ++ K D + EI+ DIG     T +L      V SV       VE  +EE++ 
Sbjct: 89  LIGSPNLTKFEKKDTHFEIEADIGLK--PTIVLDKIKECVPSVG------VEVPNEEKID 140

Query: 315 EKLFGAVRIAQMEMGSAKYVETATE 389
           E      R+ Q+    AK+V+T T+
Sbjct: 141 E------RLKQLAKDYAKFVDTNTQ 159

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 86  QGPLARPRHRGQLRRVPPGPRAHVPLPQGR*LPRDRRGHRQLG 214
           QGP  RP H GQ+  V    R   P P G   P+ ++G+R LG
Sbjct: 195 QGPPGRPGHVGQMGPVGAPGRPGPPGPPG---PKGQQGNRGLG 234

>RGF2_SCHPO (Q9UTR5) Rho1 guanine nucleotide exchange factor 2|
          Length = 1158

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 384 TEEPETAGKAAPGFRVGSARVANDSRHQERASGKASRS 497
           +E  E+ GKAA GFR+ S+  ++    Q R+SG  + S
Sbjct: 13  SESHESFGKAAKGFRIFSSFSSSQKLFQRRSSGSITHS 50

>VCAP_PRVIS (Q00705) Major capsid protein (MCP) (MCP142)|
          Length = 1330

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 89  GPLARPRHRGQLRRVPPGPRAHVPLPQGR*LPRDRRGHRQLGDRHR-HPASGAGRR 253
           GP A P+  GQ+R +P     ++PL       RD RG     DRHR  PA+ A  R
Sbjct: 535 GPFAVPQVMGQVRAMPRIINGNIPLALCPVDFRDARGFELSVDRHRLAPATVAAVR 590

>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 86   QGPLARPRHRGQLRRVPPGPRAHVPLPQG-R*LPRDRRGHRQLGDRHRHPASGAGRRHVG 262
            +GP   P  RG     P  P A     +G    P  R   R+   R R  A G GRR++ 
Sbjct: 832  RGPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGARAKPRRRRRRRRRHARGGGRRYLS 891

Query: 263  DHRHGLPC*VPVRGGAARKA 322
                G PC    R GA R +
Sbjct: 892  RPARGGPC--RARDGAHRSS 909

>TIG_WOLSU (Q7M7M4) Trigger factor (TF)|
          Length = 432

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 34/125 (27%), Positives = 55/125 (44%)
 Frame = +3

Query: 39  DDAYRNARFKIVNRIVKGPWLVRATVGNYGACLLGRALTCRYHKGDDYLEIDVDIGSSAI 218
           +DA R A  ++++  +K        +G   + L+G      Y+K D+ ++++V IG +  
Sbjct: 64  EDAEREALQELLDAALKD-------LGAEPSQLIGDPRITEYNKHDNGIDVEVKIGLAPE 116

Query: 219 ATAILHLALGAVTSVTIDMGFLVESQSEEELPEKLFGAVRIAQMEMGSAKYVETATEEPE 398
            T           S+T   GF + S SEEE+  +L        ME+  AK    A   P 
Sbjct: 117 IT--------LQESLTYVPGFELPSVSEEEINTRL--------MELAKAK----APLAPA 156

Query: 399 TAGKA 413
             GKA
Sbjct: 157 PEGKA 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,643,624
Number of Sequences: 219361
Number of extensions: 1303529
Number of successful extensions: 4161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4160
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)