ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal33j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 749 0.0
2gb|AY104294.1| Zea mays PCO116917 mRNA sequence 163 8e-37
3ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 157 5e-35
4dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 151 3e-33
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 74 6e-10
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.035
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.14
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.14
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.14
11emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 46 0.14
12gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.14
13gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.14
14gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.14
15gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.14
16gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.14
17dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.14
18gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.54
19gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.54
20gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.54
21dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.54
22emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.54
23gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.1
24gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 42 2.1
25gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 42 2.1
26ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.1
27gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 42 2.1
28emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr... 42 2.1
29gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 8.4
30gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 8.4
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.4
32gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, com... 40 8.4
33gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 8.4
34gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.4
35emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chro... 40 8.4
36gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 40 8.4
37emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 8.4
38gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 8.4
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
40gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 8.4
41gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 8.4
42dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.4
43gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 40 8.4
44emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 8.4 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  749 bits (378), Expect = 0.0
 Identities = 561/615 (91%), Gaps = 11/615 (1%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggtacctcttccctatgagctctggagatgactccgccttgcagcccattcgtttgatca 61
            |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||
Sbjct: 694  ggtacctcttccctatgagctctggaggcgactctgccttgcagcccattcgtttgatca 753

                                                                        
Query: 62   gggatgagcagaggacactctctattggaagcaaaccagatccgagcaattctgattctt 121
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  gggatgaacagaggacactctctattggaagcaaaccagatccgagcaattctgattctt 813

                                                                        
Query: 122  cgttgtcgttgcccttgccacaagtatcangagatccatgctactatcacatgcaagaac 181
            |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 814  cgttgtcgttccccttgccacaagtatca-gagatccatgctactatcacatgcaagaat 872

                                                                        
Query: 182  aagggtttctatttgaccgatctcggaagcgagcacggtacatggtttaatgacaacgaa 241
            ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 873  aagggtttctatttgaccgatctgggaagcgagcacggtacatggtttaacgacaacgaa 932

                                                                        
Query: 242  ggtaggcgctaccggttacctccaaacttcccggttcgttttcacccttcggatgccatc 301
            || || |||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 933  ggcagacgctaccggttacctccaaacttcccagttcgtttccacccttccgatgccatc 992

                                                                        
Query: 302  gagtttggttcagacaagaaggccatgttccgggtgaaggtgctcagcgcgctcccatac 361
            || ||||| ||||||||||||||||||||||||||||||||||| ||| |||| || |||
Sbjct: 993  gaatttggctcagacaagaaggccatgttccgggtgaaggtgctgagcacgcttccgtac 1052

                                                                        
Query: 362  gactcggcgagaggcgggggagaagttctgcaggcagcatgagtggggacttcagccacc 421
            ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 1053 gactccgcgagaggagggggagaagttctgcaggcagcatgagtggggacttcaacgacc 1112

                                                                        
Query: 422  ccttgtcaccagccactgt--agcattcttcagtnnnnnnncagccgacactgcatcacc 479
            |||||||||||||||||||  |||||||||||||       |||||||||||||||||  
Sbjct: 1113 ccttgtcaccagccactgtacagcattcttcagt----aaacagccgacactgcatca-t 1167

                                                                        
Query: 480  gccaagaaaaggaattgtaatttttgtactcatcaagatatgccagaacagggttttgaa 539
            |  ||||||| ||||||||| ||||| ||||||| |||||| ||| | |||| |||||| 
Sbjct: 1168 ggaaagaaaaagaattgtaacttttgcactcatccagatat-ccaaagcaggattttgag 1226

                                                                        
Query: 540  tagcttctgacagagttactacgtcgcagttcgatg-gaaagaactgagggtgtacaata 598
            |||||||||||||| ||||||||| ||||||| | |  ||||||| ||||||||||||||
Sbjct: 1227 tagcttctgacagaattactacgttgcagttctacgaaaaagaaccgagggtgtacaata 1286

                           
Query: 599  ggggtaggcaatttt 613
             ||||||||||||||
Sbjct: 1287 -gggtaggcaatttt 1300
to top
>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  163 bits (82), Expect = 8e-37
 Identities = 175/206 (84%)
 Strand = Plus / Plus

                                                                       
Query: 158 catgctactatcacatgcaagaacaagggtttctatttgaccgatctcggaagcgagcac 217
           |||||||||||||| |||||||| |||| ||||||| |||| |||||||| || || || 
Sbjct: 709 catgctactatcacgtgcaagaataaggctttctatctgactgatctcgggagtgaacat 768

                                                                       
Query: 218 ggtacatggtttaatgacaacgaaggtaggcgctaccggttacctccaaacttcccggtt 277
           ||||| ||| |||  ||||| |||||||| || |||||  | || |||||||||||||||
Sbjct: 769 ggtacctggattaccgacaatgaaggtagacgttaccgcgtgccaccaaacttcccggtt 828

                                                                       
Query: 278 cgttttcacccttcggatgccatcgagtttggttcagacaagaaggccatgttccgggtg 337
           ||||| || ||||| |||| ||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 829 cgtttccatccttccgatgtcattgagtttggttccgataagaaggctatgttccgggtg 888

                                     
Query: 338 aaggtgctcagcgcgctcccatacga 363
           |||||||| | | |||||||||||||
Sbjct: 889 aaggtgctgaacacgctcccatacga 914



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 42  gcagcccattcgtttgatcagggatgagcagaggacactctctattgg 89
           ||||||||||||||| || ||||||||||||||| |||||||| ||||
Sbjct: 594 gcagcccattcgtttaattagggatgagcagaggtcactctctgttgg 641
to top
>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  157 bits (79), Expect = 5e-35
 Identities = 194/231 (83%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                        
Query: 130  ttgcccttgccacaagtatcangagatccatgctactatcacatgcaagaacaagggttt 189
            ||||||||||||||  ||||| || | |||||||||||||||||||||||| ||||  ||
Sbjct: 1687 ttgcccttgccacagatatca-gaaaaccatgctactatcacatgcaagaataaggcctt 1745

                                                                        
Query: 190  ctatttgaccgatctcggaagcgagcacggtacatggtttaatgacaacgaaggtaggcg 249
             ||| |||| |||   ||||| || || ||||||||| |||  |||||||||||||| ||
Sbjct: 1746 ttatgtgactgataatggaagtgaacatggtacatggattaccgacaacgaaggtagacg 1805

                                                                        
Query: 250  ctaccggttacctccaaacttcccggttcgttttcacccttcggatgccatcgagtttgg 309
            ||| ||  ||||||| |||||||| || ||||| || || ||||||||||| ||||||||
Sbjct: 1806 ctatcgcgtacctccgaacttccctgtccgtttccatccctcggatgccattgagtttgg 1865

                                                               
Query: 310  ttcagacaagaaggccatgttccgggtgaaggtgctcagcgcgctcccata 360
            |||||| || |||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 1866 ttcagataaaaaggccgtgttccgtgtgaaggtgctgagcacgctcccata 1916
to top
>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  151 bits (76), Expect = 3e-33
 Identities = 195/232 (84%), Gaps = 2/232 (0%)
 Strand = Plus / Plus

                                                                        
Query: 130  ttgcccttgccacaagtatcangagatccatgctactatcacatgcaagaacaagggttt 189
            ||||||||||||||  ||||| || | |||||||||||||||||||||||| ||||  ||
Sbjct: 1879 ttgcccttgccacagatatca-gaaaaccatgctactatcacatgcaagaataaggcctt 1937

                                                                        
Query: 190  ctatttgaccgatctcggaagcgagcacggtacatggtttaatgacaacgaaggtaggcg 249
             ||| |||| |||   ||||| || || ||||||||| |||  |||||||||||||| ||
Sbjct: 1938 ttatgtgactgataatggaagtgaacatggtacatggattaccgacaacgaaggtagacg 1997

                                                                        
Query: 250  ctaccggt-tacctccaaacttcccggttcgttttcacccttcggatgccatcgagtttg 308
            ||| |||  ||||||| |||||||| || ||||| || || ||||||||||| |||||||
Sbjct: 1998 ctatcggcgtacctccgaacttccctgtccgtttccatccctcggatgccattgagtttg 2057

                                                                
Query: 309  gttcagacaagaaggccatgttccgggtgaaggtgctcagcgcgctcccata 360
            ||||||| || |||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 2058 gttcagataaaaaggccgtgttccgtgtgaaggtgctgagcacgctcccata 2109
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                            
Query: 235      caacgaaggtaggcgctaccggttacctccaaacttcccggttcgttttcacccttcgga 294
                |||||||||||| ||||| ||  ||||||| |||||||| || ||||| || || |||||
Sbjct: 22350802 caacgaaggtagacgctatcgcgtacctccgaacttccctgtccgtttccatccctcgga 22350861

                                     
Query: 295      tgccatcgagtttggttcaga 315
                |||||| ||||||||||||||
Sbjct: 22350862 tgccattgagtttggttcaga 22350882



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 157      ccatgctactatcacatgcaagaacaagg 185
                |||||||||||||||||||||||| ||||
Sbjct: 22350634 ccatgctactatcacatgcaagaataagg 22350662



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 321      aggccatgttccgggtgaaggtgctcagcgcgctcccata 360
                ||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 22351009 aggccgtgttccgtgtgaaggtgctgagcacgctcccata 22351048
to top
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                          
Query: 235    caacgaaggtaggcgctaccggttacctccaaacttcccggttcgttttcacccttcgga 294
              |||||||||||| ||||| ||  ||||||| |||||||| || ||||| || || |||||
Sbjct: 101706 caacgaaggtagacgctatcgcgtacctccgaacttccctgtccgtttccatccctcgga 101765

                                   
Query: 295    tgccatcgagtttggttcaga 315
              |||||| ||||||||||||||
Sbjct: 101766 tgccattgagtttggttcaga 101786



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 157    ccatgctactatcacatgcaagaacaagg 185
              |||||||||||||||||||||||| ||||
Sbjct: 101538 ccatgctactatcacatgcaagaataagg 101566



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 321    aggccatgttccgggtgaaggtgctcagcgcgctcccata 360
              ||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 101913 aggccgtgttccgtgtgaaggtgctgagcacgctcccata 101952
to top
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 491    gaattgtaatttttgtactcatcaagat 518
              ||||||| ||||||||||||||||||||
Sbjct: 283714 gaattgttatttttgtactcatcaagat 283687
to top
>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 1956 catcgagtttggttcagataagaaggc 1982
to top
>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2036 catcgagtttggttcagataagaaggc 2062
to top
>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2040 catcgagtttggttcagataagaaggc 2066
to top
>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 60    cagggatgagcagaggacactct 82
             |||||||||||||||||||||||
Sbjct: 76981 cagggatgagcagaggacactct 77003
to top
>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 1970 catcgagtttggttcagataagaaggc 1996
to top
>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2183 catcgagtttggttcagataagaaggc 2209
to top
>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 1976 catcgagtttggttcagataagaaggc 2002
to top
>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2095 catcgagtttggttcagataagaaggc 2121
to top
>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2031 catcgagtttggttcagataagaaggc 2057
to top
>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  catcgagtttggttcagacaagaaggc 324
            |||||||||||||||||| ||||||||
Sbjct: 2036 catcgagtttggttcagataagaaggc 2062
to top
>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 483    aagaaaaggaattgtaattttt 504
              ||||||||||||||||||||||
Sbjct: 132766 aagaaaaggaattgtaattttt 132787
to top
>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 298  catcgagtttggttcagacaagaagg 323
            |||||||||||||||||| |||||||
Sbjct: 3213 catcgagtttggttcagataagaagg 3238
to top
>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 298  catcgagtttggttcagacaagaagg 323
            |||||||||||||||||| |||||||
Sbjct: 3720 catcgagtttggttcagataagaagg 3745
to top
>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 298   catcgagtttggttcagacaagaagg 323
             |||||||||||||||||| |||||||
Sbjct: 26593 catcgagtttggttcagataagaagg 26568
to top
>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 483    aagaaaaggaattgtaattttt 504
              ||||||||||||||||||||||
Sbjct: 128636 aagaaaaggaattgtaattttt 128657
to top
>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 179    aacaagggtttctatttgacc 199
              |||||||||||||||||||||
Sbjct: 125799 aacaagggtttctatttgacc 125779
to top
>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     ggatgagcagaggacactctc 83
              |||||||||||||||||||||
Sbjct: 142398 ggatgagcagaggacactctc 142378
to top
>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    ggatgagcagaggacactctc 83
             |||||||||||||||||||||
Sbjct: 22619 ggatgagcagaggacactctc 22639
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 63      ggatgagcagaggacactctc 83
               |||||||||||||||||||||
Sbjct: 4401176 ggatgagcagaggacactctc 4401156



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 63      ggatgagcagaggacactctc 83
               |||||||||||||||||||||
Sbjct: 1647664 ggatgagcagaggacactctc 1647684
to top
>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    catgctactatcacatgcaag 178
              |||||||||||||||||||||
Sbjct: 158637 catgctactatcacatgcaag 158657
to top
>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   caagaacaagggtttctattt 195
             |||||||||||||||||||||
Sbjct: 31346 caagaacaagggtttctattt 31326
to top
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 491    gaattgtaatttttgtactcatcaagat 518
              ||||||| |||||| |||||||||||||
Sbjct: 984535 gaattgttatttttatactcatcaagat 984508
to top
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 498     aatttttgtactcatcaaga 517
               ||||||||||||||||||||
Sbjct: 1314638 aatttttgtactcatcaaga 1314619
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 483      aagaaaaggaattgtaattt 502
                ||||||||||||||||||||
Sbjct: 34148371 aagaaaaggaattgtaattt 34148352
to top
>gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, complete sequence
          Length = 121868

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   ccactgtagcattcttcagt 453
             ||||||||||||||||||||
Sbjct: 29935 ccactgtagcattcttcagt 29954
to top
>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 585  gagggtgtacaataggggta 604
            ||||||||||||||||||||
Sbjct: 8075 gagggtgtacaataggggta 8056
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 472     gcatcaccgccaagaaaagg 491
               ||||||||||||||||||||
Sbjct: 3710744 gcatcaccgccaagaaaagg 3710763
to top
>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   agacaagaaggccatgttcc 332
             ||||||||||||||||||||
Sbjct: 17164 agacaagaaggccatgttcc 17183
to top
>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   ccactgtagcattcttcagt 453
             ||||||||||||||||||||
Sbjct: 46184 ccactgtagcattcttcagt 46165
to top
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 498     aatttttgtactcatcaaga 517
               ||||||||||||||||||||
Sbjct: 1327559 aatttttgtactcatcaaga 1327540
to top
>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 576   gaaagaactgagggtgtaca 595
             ||||||||||||||||||||
Sbjct: 96613 gaaagaactgagggtgtaca 96594
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 483      aagaaaaggaattgtaattt 502
                ||||||||||||||||||||
Sbjct: 34238843 aagaaaaggaattgtaattt 34238824
to top
>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 526   aacagggttttgaatagcttctga 549
             |||||| |||||||||||||||||
Sbjct: 99180 aacaggcttttgaatagcttctga 99157
to top
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    aagaaaaggaattgtaattt 502
              ||||||||||||||||||||
Sbjct: 112183 aagaaaaggaattgtaattt 112164
to top
>dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-159N11, complete
             sequence
          Length = 177031

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tcagggatgagcagaggaca 78
             ||||||||||||||||||||
Sbjct: 99881 tcagggatgagcagaggaca 99900
to top
>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   ccttgtcaccagccactgta 441
             ||||||||||||||||||||
Sbjct: 63632 ccttgtcaccagccactgta 63651
to top
>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 488   aaggaattgtaatttttgtactca 511
             ||||||||| ||||||||||||||
Sbjct: 69382 aaggaattggaatttttgtactca 69405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,843,353
Number of Sequences: 3902068
Number of extensions: 4843353
Number of successful extensions: 82052
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81810
Number of HSP's gapped (non-prelim): 233
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top