ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal33i17 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 333 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 977 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1036 Query: 334 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 492 P EV I E+L + S +N LR + DL L +W Sbjct: 1037 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1096 Query: 493 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 + + +G+ N LTL + + L+++PV+YE+++ +ID + Sbjct: 1097 VFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHY 1135
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 55.1 bits (131), Expect = 2e-07 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 333 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 1007 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1066 Query: 334 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 492 P EV I E+L + S +N LR + DL L +W Sbjct: 1067 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMW 1126 Query: 493 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 + + +G+ N LTL + + L++VPV+YE+++ +ID + Sbjct: 1127 VFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHY 1165
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 333 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 978 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1037 Query: 334 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 492 P EV I E+L + S +N LR + DL L +W Sbjct: 1038 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1097 Query: 493 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 + + +G+ N LTL + + L+++PV+YE+++ +ID + Sbjct: 1098 VFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHY 1136
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 53.5 bits (127), Expect = 5e-07 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Frame = +1 Query: 148 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 318 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 319 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 477 V K P E+ + ++ L++ +N LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 478 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+L+ +G+ N LTL + + ++T+PV+Y K++ +ID + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 53.5 bits (127), Expect = 5e-07 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Frame = +1 Query: 148 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 318 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 319 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 477 V K P E+ + ++ L++ +N LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 478 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+L+ +G+ N LTL + + ++T+PV+Y K++ +ID + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 52.8 bits (125), Expect = 9e-07 Identities = 33/161 (20%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 327 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 50 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107 Query: 328 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 486 K P ++ + + N + INR + + DL L + Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167 Query: 487 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHY 208
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 51.6 bits (122), Expect = 2e-06 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Frame = +1 Query: 148 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 318 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 589 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 646 Query: 319 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 477 V K P E+ + ++ L+ +N LR + +DL L Sbjct: 647 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 706 Query: 478 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+L+ +G+ N LTL + + ++T+PV+Y K++ ++D + Sbjct: 707 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 750
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 51.6 bits (122), Expect = 2e-06 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Frame = +1 Query: 148 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 318 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 592 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 649 Query: 319 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 477 V K P E+ + ++ L+ +N LR + +DL L Sbjct: 650 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 709 Query: 478 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+L+ +G+ N LTL + + ++T+PV+Y K++ ++D + Sbjct: 710 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 753
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 50.4 bits (119), Expect = 5e-06 Identities = 31/161 (19%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 327 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 51 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 108 Query: 328 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 486 K P ++ + + N + +N+ + + DL L + Sbjct: 109 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 168 Query: 487 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + Sbjct: 169 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHY 209
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 10/162 (6%) Frame = +1 Query: 154 ADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCH----GFILTLGILFLWSNASA 321 ADLL W++ + SG V G A L +L + ++++ H G T+ + A Sbjct: 273 ADLLYWKDTRTSGAVFTGLMASLLC--LLHFSIVSVAAHLALLGLCATISLRVYRKVLQA 330 Query: 322 FVNKCPPNIPEVKIPEDLAVN------VARSLRYEINRGFASLRAIGQGRDLKKFLIVVA 483 N + + DL + +++ + + LR DL L + Sbjct: 331 VHRGDGTNPFQAYLDMDLTLTREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLAL 390 Query: 484 GLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 +IL+ +G+ N LTL + + L+TVP+LY +++ +ID + Sbjct: 391 LFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQY 432
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 44.3 bits (103), Expect = 3e-04 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%) Frame = +1 Query: 142 GGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCH-GFILTLGILFL--WSN 312 G K ADLL W++ + SG V G L +L + ++++ H +L G + L + Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLLCGTISLRVYRK 399 Query: 313 ASAFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFL 471 V++ P ++ + + ++ + + LR DL L Sbjct: 400 VLQAVHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSL 459 Query: 472 IVVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 609 + +IL+ +G+ N LTL + + L+T+P+LY +++ +ID + Sbjct: 460 KLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQY 505
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 34.7 bits (78), Expect = 0.26 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -3 Query: 595 CPHTSRTGQARCRVP*RLCRTR*GNCRSCQEQRGSTGLQPQSGISSGRGLGQWP 434 CP ++G +R R +LC N + C+++ G+ G +P G+SS G WP Sbjct: 522 CPKKRKSGNSRERC--QLCNGMGHNAKQCRKRDGNQGQRPGKGLSS----GPWP 569
>RTN1_YEAST (Q04947) Reticulon-like protein 1| Length = 295 Score = 34.3 bits (77), Expect = 0.35 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 9/159 (5%) Frame = +1 Query: 157 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILFLWSNASA-FVNK 333 DLLLWRN +G G+ L+ + + +L+T F L + L++ S FV+K Sbjct: 22 DLLLWRNPVQTGKYFGGSLLALLILK--KVNLIT-----FFLKVAYTILFTTGSIEFVSK 74 Query: 334 CPPNIPEV-KIPEDLAVNVARSLRYEINRGF-------ASLRAIGQGRDLKKFLIVVAGL 489 + K N+A ++ I+ A +R + K L Sbjct: 75 LFLGQGLITKYGPKECPNIAGFIKPHIDEALKQLPVFQAHIRKTVFAQVPKHTFKTAVAL 134 Query: 490 WILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDA 606 ++L S + T+ ++ + +T+PV+Y Y+ +IDA Sbjct: 135 FLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDA 173
>RL2_METTH (O26113) 50S ribosomal protein L2P| Length = 241 Score = 33.1 bits (74), Expect = 0.77 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = -1 Query: 246 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDG 130 V + P GGG R+HP R V PP ++VG +AA G Sbjct: 196 VAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTG 238
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Frame = +1 Query: 469 LIVVAGLWILSALGSSC------------NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFG 612 L++V G ++++ C F L +VF++ T+ VL+ Y DKID++ Sbjct: 56 LLIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYA 115 Query: 613 EKAMVELKK 639 ++ +LKK Sbjct: 116 QQ---DLKK 121
>YDZC_SCHPO (O13719) Hypothetical protein C14C4.12c in chromosome I| Length = 297 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = -2 Query: 275 KPWQRRVRRWYSRTSNSSQMAVAPASTP---PEIFLFLHSKRSAGLPPPRTEWTGFSRP 108 K W RR R+W R S + + + A P P FL +H+ + P T +G S P Sbjct: 89 KIWLRRERQWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147
>PANE_ARCFU (O28578) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169)| (Ketopantoate reductase) (KPA reductase) (KPR) Length = 294 Score = 32.0 bits (71), Expect = 1.7 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -1 Query: 375 QVLRDLHLWNVGRALVDEGRGV 310 +V+R+ HLW V RA+ DEGR V Sbjct: 198 EVVRNPHLWEVARAVADEGRQV 219
>ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2763 Score = 31.2 bits (69), Expect = 2.9 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%) Frame = +1 Query: 532 LFYIVFMVLYTVPV----------LYEKYEDKIDAFGEKAMVELKKYYAIFDE 660 L+YI+ +LY +P LYEKY DK+D EK ++K IFD+ Sbjct: 2269 LWYIMKRLLYKLPFETGYAVINLQLYEKYSDKLD---EKISEKIKAANLIFDQ 2318
>RPOB_BRUSU (Q8G069) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 594 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 418 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 417 P 415 P Sbjct: 997 P 997
>RPOB_BRUME (Q8YHP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 594 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 418 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 417 P 415 P Sbjct: 997 P 997
>RPOB_BRUAB (Q57CP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 594 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 418 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 417 P 415 P Sbjct: 997 P 997
>RPOB_BRUA2 (Q2YM15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 594 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 418 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 417 P 415 P Sbjct: 997 P 997
>Y2133_ARCFU (O28147) Hypothetical protein AF2133| Length = 286 Score = 30.8 bits (68), Expect = 3.8 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = +1 Query: 112 REKPVHSVLGGGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEY-HLLTLLCHGFIL-- 282 R+K + + L G D +LW +G +L A + + ++L+ + ++ G +L Sbjct: 36 RQKDLSAKLRWGI-VDEILWTIIVANGAILFTAHYVLIGLKILDLIAIFVVMLSGVMLYA 94 Query: 283 TLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYE 408 L LFL+ AF PP+ P+ + L V+ + YE Sbjct: 95 PLAFLFLYPVVRAFEKNFPPSNPQFLLSHGLICTVSSLIVYE 136
>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) (Novel antigen 2) (NAG-2) Length = 238 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 12/69 (17%) Frame = +1 Query: 469 LIVVAGLWILS-----ALGS----SCNFLTLFYI---VFMVLYTVPVLYEKYEDKIDAFG 612 L+++ G ++++ LG+ C LT F + VF++ T+ +L+ Y DKID + Sbjct: 56 LLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYA 115 Query: 613 EKAMVELKK 639 ++ +LKK Sbjct: 116 QQ---DLKK 121
>RPOB_BRAJA (Q89J74) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1372 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -1 Query: 579 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAP 415 V +RHGV+ E + + EEI AK R+D QA + ++A L G Q P Sbjct: 941 VFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGP 996
>CFTR_CANFA (Q5U820) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1483 Score = 30.4 bits (67), Expect = 5.0 Identities = 28/97 (28%), Positives = 39/97 (40%) Frame = +1 Query: 250 LLTLLCHGFILTLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYEINRGFAS 429 LL L FI L I+ A A V+ P I +P A + R+ ++ Sbjct: 987 LLPLTIFDFIQLLLIVI---GAVAVVSVLQPYIFLATVPVIAAFIILRAYFLHTSQQLKQ 1043 Query: 430 LRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLTLFY 540 L + G+ L + GLW L A G F TLF+ Sbjct: 1044 LESEGRSPIFTHLLTSLKGLWTLRAFGRQPYFETLFH 1080
>CFTR_CALJA (Q2QLF9) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 30.0 bits (66), Expect = 6.5 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +1 Query: 250 LLTLLCHGFILTLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYEINRGFAS 429 LL L FI L I+ A A V+ P I +P A + R+ + ++ Sbjct: 986 LLPLTIFDFIQLLLIVI---GAIAVVSVLQPYIFLATVPVIAAFVLLRAYFLQTSQQLKQ 1042 Query: 430 LRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLTLFY 540 L + G+ + + GLW L A G F TLF+ Sbjct: 1043 LESAGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFH 1079
>SYK_WOLSU (Q7MAR1) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 507 Score = 30.0 bits (66), Expect = 6.5 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Frame = -1 Query: 513 AAKSREDPQACNHNQEFLQVAALANGPQASKAPVD--------LIAQRAGNIDRQVLRDL 358 A +S E+PQ + + F+ ++NG P+D + A+ AG+ + Q + + Sbjct: 392 ARRSDENPQIADRFELFIGKKEISNGFSELNDPLDQLERFKAQVAAKNAGDEEAQHMDED 451 Query: 357 HLWNVGRAL-VDEGRGVG 307 ++W +G L G G+G Sbjct: 452 YVWALGHGLPPTAGEGIG 469
>HM13_MOUSE (Q9D8V0) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal| peptide peptidase) (Presenilin-like protein 3) Length = 378 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 196 VLAGAT--AIWLLFEVLEYHLLTLLCHGFILTLGILFLWSNASAFVNK-CPPNIP 351 ++A T ++L F++ + LL + LGIL L S F+NK P N P Sbjct: 80 IIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFP 134
>RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)| Length = 239 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -1 Query: 246 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 121 V + P GGG R+HP + + PP ++VG +A+ G G Sbjct: 192 VAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 237
>GLND_BRUSU (Q8G312) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -1 Query: 603 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 430 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUME (Q8YES3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -1 Query: 603 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 430 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUAB (Q57FN0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -1 Query: 603 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 430 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUA2 (Q2YNZ1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -1 Query: 603 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 430 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>PROA_DEIRA (Q9RTD9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 432 Score = 30.0 bits (66), Expect = 6.5 Identities = 21/68 (30%), Positives = 30/68 (44%) Frame = -1 Query: 564 GVEYHEDYVEQGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLIAQRAGN 385 GVE D E +AGA + Q ++ EFL + A +D IA+R G+ Sbjct: 297 GVEVRAD-AEAQAALAGAGLNVTSAQLGDYGTEFLALVASLRTVSGLDEALDFIAERGGH 355 Query: 384 IDRQVLRD 361 D + RD Sbjct: 356 TDVILTRD 363
>RPOB_RHOPA (Q6N4R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 30.0 bits (66), Expect = 6.5 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -1 Query: 579 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAP 415 V +RHGV+ E + + EEI AK R+D QA + ++A L +G Q P Sbjct: 943 VFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGP 998
>CFTR_CALMO (Q2QLB4) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1480 Score = 30.0 bits (66), Expect = 6.5 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +1 Query: 250 LLTLLCHGFILTLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYEINRGFAS 429 LL L FI L I+ A A V+ P I +P A + R+ + ++ Sbjct: 986 LLPLTIFDFIQLLLIVI---GAIAVVSVLQPYIFLATVPVIAAFILLRAYFLQTSQQLKQ 1042 Query: 430 LRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLTLFY 540 L + G+ + + GLW L A G F TLF+ Sbjct: 1043 LESAGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFH 1079
>CFTR_PIG (Q6PQZ2) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1482 Score = 29.6 bits (65), Expect = 8.5 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +1 Query: 250 LLTLLCHGFILTLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYEINRGFAS 429 LL L FI L I+ A A V+ P I +P +A + R+ ++ Sbjct: 987 LLPLTIFDFIQLLLIVI---GAVAVVSVLKPYIFLATVPVIVAFILLRAYFLHTSQQLKQ 1043 Query: 430 LRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLTLFY 540 L + G+ + + GLW L A G F TLF+ Sbjct: 1044 LESEGRSPIFTHLITSLKGLWTLRAFGRQPYFETLFH 1080
>CFTR_HORSE (Q2QLA3) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 8.5 Identities = 38/141 (26%), Positives = 56/141 (39%) Frame = +1 Query: 118 KPVHSVLGGGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGIL 297 K +HSVL P L N +GG+L + + + LL L FI L I+ Sbjct: 951 KMLHSVLQA--PMSTL---NTLKAGGILNRFSKDMAILD----DLLPLTIFDFIQLLLIV 1001 Query: 298 FLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 477 A A V+ P I +P A + R+ ++ L + G+ + Sbjct: 1002 I---GAVAVVSVLQPYIFLATVPVIAAFIILRAYFLHTSQQLKQLESEGRSPIFTHLVTS 1058 Query: 478 VAGLWILSALGSSCNFLTLFY 540 + GLW L A G F TLF+ Sbjct: 1059 LKGLWTLRAFGRQPYFETLFH 1079
>RL2_METMA (Q8PV47) 50S ribosomal protein L2P| Length = 238 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -1 Query: 246 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 127 V + + P GGGA +HP + V PP ++VG +AA G+ Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236
>RL2_METAC (Q8TRU4) 50S ribosomal protein L2P| Length = 238 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -1 Query: 246 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 127 V + + P GGGA +HP + V PP ++VG +AA G+ Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236
>RPOB_RHILO (Q98N66) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 29.6 bits (65), Expect = 8.5 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -1 Query: 594 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 418 V+ + V +RHGVE E + + EEI AK R+D QA + +++ + G +A Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAG 996 Query: 417 P 415 P Sbjct: 997 P 997
>RPOB_ZYMMO (Q5NPK5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1401 Score = 29.6 bits (65), Expect = 8.5 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = -1 Query: 579 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 403 V +RHGV+ E + + EEI K RED +A + + Q+ G + AP I Sbjct: 955 VFNRHGVDKDERAMAIEREEIERLTKDREDERAILNRATYAQLQEKLLGQTVAAAPYKHI 1014 Query: 402 AQRAGNIDRQVLRDL--HLW 349 + A ID + L + H W Sbjct: 1015 VKGA-RIDIETLASVEPHKW 1033 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,716,363 Number of Sequences: 219361 Number of extensions: 1584087 Number of successful extensions: 6069 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 5821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6055 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
