Clone Information

BLAST Search Result

Clone Name	baal33e24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099561.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	327	2e-86
2	ref\|NM_190643.1\| Oryza sativa (japonica cultivar-group), predic...	291	1e-75
3	gb\|AY112109.1\| Zea mays CL26172_1 mRNA sequence	272	1e-69
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	6e-44
5	dbj\|AP003279.2\| Oryza sativa (japonica cultivar-group) genomic D...	186	6e-44
6	dbj\|AK105423.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
7	dbj\|AK101805.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
8	gb\|AC162890.4\| Mus musculus chromosome 3, clone RP23-362E13, com...	44	0.52
9	gb\|AC125349.3\| Mus musculus BAC clone RP23-394P9 from chromosome...	44	0.52
10	gb\|AE017226.1\| Treponema denticola ATCC 35405, complete genome	44	0.52
11	dbj\|AP007284.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	44	0.52
12	gb\|AC087859.3\| Homo sapiens chromosome 3 clone RP11-34L16 map 3p...	42	2.1
13	ref\|XM_512454.1\| PREDICTED: Pan troglodytes similar to Human hom...	40	8.2
14	ref\|XM_322205.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.2
15	ref\|XM_952151.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.2
16	gb\|AC145959.3\| Gallus gallus chromosome UNK clone CH261-17M10, c...	40	8.2
17	ref\|XM_390936.1\| Gibberella zeae PH-1 chromosome 3 hypothetical ...	40	8.2
18	gb\|CP000302.1\| Shewanella denitrificans OS217, complete genome	40	8.2
19	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	8.2
20	emb\|AL033530.1\|HS629A15 Human DNA sequence from clone RP4-629A15...	40	8.2
21	gb\|AC074335.11\| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, ...	40	8.2
22	gb\|AC112507.7\| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance...	40	8.2
23	gb\|AE005913.1\| Caulobacter crescentus CB15 section 239 of 359 of...	40	8.2
24	gb\|AC107220.4\| Homo sapiens BAC clone RP11-586L23 from 4, comple...	40	8.2
25	dbj\|AB162342.1\| Oncorhynchus mykiss genes, MHC class I a region,...	40	8.2
26	gb\|AC104801.4\| Homo sapiens BAC clone RP11-356J12 from 2, comple...	40	8.2
27	gb\|AC133565.5\| Homo sapiens chromosome 16 clone RP11-895K13, com...	40	8.2
28	gb\|U51003.1\|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds	40	8.2
29	gb\|AC007059.1\|AC007059 Homo sapiens chromosome 19, cosmid R26549...	40	8.2
30	dbj\|AB208823.1\| Homo sapiens mRNA for distal-less homeo box 2 va...	40	8.2

>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full
           insert sequence
          Length = 1002

 Score =  327 bits (165), Expect = 2e-86
 Identities = 301/345 (87%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 227 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 286
           ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311

                                                                       
Query: 287 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 346
           || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371

                                                                       
Query: 347 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 406
           || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431

                                                                       
Query: 407 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 466
           ||||||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | 
Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491

                                                                       
Query: 467 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 526
           ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || 
Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551

                                                        
Query: 527 gaggagaaaaacgaaggcatgtttcttcaaaagccttggcaaggt 571
            |||||||||| ||||| ||| ||||||||||||||||| |||||
Sbjct: 552 aaggagaaaaatgaaggtatg-ttcttcaaaagccttgggaaggt 595



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 72  aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 131
           ||||||||||||||| |||| ||||| || |||  ||| |||| ||||  | ||||||||
Sbjct: 100 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 159

               
Query: 132 cccc 135
           ||||
Sbjct: 160 cccc 163

to top

>ref|NM_190643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score =  291 bits (147), Expect = 1e-75
 Identities = 265/303 (87%), Gaps = 1/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 269 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 328
           ||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||
Sbjct: 1   atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60

                                                                       
Query: 329 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 388
           ||||||||  | ||||| || ||||||||||||||  ||||||| |||||||||||||||
Sbjct: 61  accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120

                                                                       
Query: 389 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 448
           ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| |||  
Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180

                                                                       
Query: 449 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 508
           |||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | ||||||
Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240

                                                                       
Query: 509 ttcgaagactggatcgaagaggagaaaaacgaaggcatgtttcttcaaaagccttggcaa 568
           |||||||| ||||| ||  |||||||||| ||||| ||| ||||||||||||||||| ||
Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaaggtatg-ttcttcaaaagccttgggaa 299

              
Query: 569 ggt 571
           |||
Sbjct: 300 ggt 302

to top

>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence
          Length = 768

 Score =  272 bits (137), Expect = 1e-69
 Identities = 245/281 (87%)
 Strand = Plus / Minus

                                                                       
Query: 241 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 300
           |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| |
Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510

                                                                       
Query: 301 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 360
           |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450

                                                                       
Query: 361 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 420
           |||| ||||||||||||||||||||||||| || |||    |||| ||||||||| ||||
Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390

                                                                       
Query: 421 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 480
           | | |||||||||||||||||  ||| ||||||||| |||||  | ||| |||| |||||
Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330

                                                    
Query: 481 agaaatgaatgagagagtgttagaagacttcgaagactgga 521
           ||||||||| || |  |||||||| ||||||||||||||||
Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 549 ttcttcaaaagccttggcaaggtcaaa 575
           |||||||||||||||||||||||||||
Sbjct: 262 ttcttcaaaagccttggcaaggtcaaa 236

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 6e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                            
Query: 227      ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 286
                ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150

                                                                            
Query: 287      gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 346
                || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090

                                                                            
Query: 347      gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 406
                || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030

                      
Query: 407      gaccag 412
                ||||||
Sbjct: 36730029 gaccag 36730024



 Score =  145 bits (73), Expect = 2e-31
 Identities = 140/161 (86%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                            
Query: 411      agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 470
                ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893

                                                                            
Query: 471      ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 530
                ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833

                                                         
Query: 531      agaaaaacgaaggcatgtttcttcaaaagccttggcaaggt 571
                ||||||| ||||| ||| ||||||||||||||||| |||||
Sbjct: 36729832 agaaaaatgaaggtatg-ttcttcaaaagccttgggaaggt 36729793



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                            
Query: 72       aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 131
                ||||||||||||||| |||| ||||| || |||  ||| |||| ||||  | ||||||||
Sbjct: 36730361 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 36730302

                    
Query: 132      cccc 135
                ||||
Sbjct: 36730301 cccc 36730298

to top

>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score =  186 bits (94), Expect = 6e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                         
Query: 227   ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 286
             ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465

                                                                         
Query: 287   gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 346
             || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405

                                                                         
Query: 347   gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 406
             || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345

                   
Query: 407   gaccag 412
             ||||||
Sbjct: 56344 gaccag 56339



 Score =  145 bits (73), Expect = 2e-31
 Identities = 140/161 (86%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                         
Query: 411   agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 470
             ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208

                                                                         
Query: 471   ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 530
             ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148

                                                      
Query: 531   agaaaaacgaaggcatgtttcttcaaaagccttggcaaggt 571
             ||||||| ||||| ||| ||||||||||||||||| |||||
Sbjct: 56147 agaaaaatgaaggtatg-ttcttcaaaagccttgggaaggt 56108



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 72    aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 131
             ||||||||||||||| |||| ||||| || |||  ||| |||| ||||  | ||||||||
Sbjct: 56676 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 56617

                 
Query: 132   cccc 135
             ||||
Sbjct: 56616 cccc 56613

to top

>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full
            insert sequence
          Length = 3098

 Score =  145 bits (73), Expect = 2e-31
 Identities = 140/161 (86%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                        
Query: 411  agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 470
            ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423

                                                                        
Query: 471  ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 530
            ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363

                                                     
Query: 531  agaaaaacgaaggcatgtttcttcaaaagccttggcaaggt 571
            ||||||| ||||| ||| ||||||||||||||||| |||||
Sbjct: 2362 agaaaaatgaaggtatg-ttcttcaaaagccttgggaaggt 2323



 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                        
Query: 227  ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 286
            ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586

                                                                        
Query: 287  gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 346
            || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526

                             
Query: 347  gccgacaccgagttcga 363
            || ||||||||||||||
Sbjct: 2525 gcggacaccgagttcga 2509



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 72   aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 131
            ||||||||||||||| |||| ||||| || |||  ||| |||| ||||  | ||||||||
Sbjct: 2797 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 2738

                
Query: 132  cccc 135
            ||||
Sbjct: 2737 cccc 2734

to top

>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full
            insert sequence
          Length = 3051

 Score =  145 bits (73), Expect = 2e-31
 Identities = 140/161 (86%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                        
Query: 411  agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 470
            ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402

                                                                        
Query: 471  ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 530
            ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342

                                                     
Query: 531  agaaaaacgaaggcatgtttcttcaaaagccttggcaaggt 571
            ||||||| ||||| ||| ||||||||||||||||| |||||
Sbjct: 2341 agaaaaatgaaggtatg-ttcttcaaaagccttgggaaggt 2302



 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                        
Query: 227  ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 286
            ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550

                                                                        
Query: 287  gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 346
            || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490

                             
Query: 347  gccgacaccgagttcga 363
            || ||||||||||||||
Sbjct: 2489 gcggacaccgagttcga 2473



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 72   aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 131
            ||||||||||||||| |||| ||||| || |||  ||| |||| ||||  | ||||||||
Sbjct: 2761 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 2702

                
Query: 132  cccc 135
            ||||
Sbjct: 2701 cccc 2698

to top

>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence
          Length = 113095

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 325   cctgaccaagttcaccaaggac 346
             ||||||||||||||||||||||
Sbjct: 38417 cctgaccaagttcaccaaggac 38396

to top

>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence
          Length = 194060

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 325   cctgaccaagttcaccaaggac 346
             ||||||||||||||||||||||
Sbjct: 41344 cctgaccaagttcaccaaggac 41365

to top

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 574     aaaaacctcaaaacaatgagga 595
               ||||||||||||||||||||||
Sbjct: 1907320 aaaaacctcaaaacaatgagga 1907299

to top

>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183,
             complete sequence
          Length = 70173

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 242   cagcaggaggtgcttgcaaaaa 263
             ||||||||||||||||||||||
Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888

to top

>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence
          Length = 151927

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    cccaaagaatcaagaggagat 81
             |||||||||||||||||||||
Sbjct: 84555 cccaaagaatcaagaggagat 84535

to top

>ref|XM_512454.1| PREDICTED: Pan troglodytes similar to Human homolog of Mus musculus
           wizL protein (LOC455796), mRNA
          Length = 5466

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 542 ggcatgtttcttcaaaagccttgg 565
           ||||||||||| ||||||||||||
Sbjct: 291 ggcatgtttctccaaaagccttgg 268

to top

>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 406  ggaccagataatggagcgtctcga 429
            |||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150

to top

>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 406  ggaccagataatggagcgtctcga 429
            |||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150

to top

>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    tgcagtgcatcaaagcagga 164
              ||||||||||||||||||||
Sbjct: 171766 tgcagtgcatcaaagcagga 171785

to top

>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1)
            partial mRNA
          Length = 2469

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  caagagcagctccgaagatg 200
            ||||||||||||||||||||
Sbjct: 1996 caagagcagctccgaagatg 1977

to top

>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 573    aaaaaacctcaaaacaatga 592
              ||||||||||||||||||||
Sbjct: 126929 aaaaaacctcaaaacaatga 126948

to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 226     cggcggtgaccaacgccagcagga 249
               |||||||||||| |||||||||||
Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621

to top

>emb|AL033530.1|HS629A15 Human DNA sequence from clone RP4-629A15 on chromosome 1p31.1-31.3
             Contains EST, complete sequence
          Length = 93643

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaaagcagcagcataccaaa 58
             ||||||||||||||||||||
Sbjct: 15651 aaaagcagcagcataccaaa 15632

to top

>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete
              sequence
          Length = 201643

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 147    cagtgcatcaaagcaggaggagat 170
              ||||| ||||||||||||||||||
Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135

to top

>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184696

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    aaagccttggcaaggtcaaa 575
              ||||||||||||||||||||
Sbjct: 155140 aaagccttggcaaggtcaaa 155159

to top

>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome
          Length = 13785

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 328  gaccaagttcaccaaggacgccga 351
            ||||||||||| ||||||||||||
Sbjct: 4339 gaccaagttcagcaaggacgccga 4362

to top

>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence
          Length = 67392

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   gccagcaggaggtgcttgcaaaaa 263
             ||||||||| ||||||||||||||
Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357

to top

>dbj|AB162342.1| Oncorhynchus mykiss genes, MHC class I a region, complete and partial
             cds
          Length = 103035

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   tcaaaagccttggcaaggtc 572
             ||||||||||||||||||||
Sbjct: 28871 tcaaaagccttggcaaggtc 28890

to top

>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 522  tcgaagaggagaaaaacgaaggca 545
            |||||||||||||||| |||||||
Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542

to top

>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 113    ccctcgccgcgcagatcctccccgcgcc 140
              ||||| ||||||||| ||||||||||||
Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006

to top

>gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 522  tcgaagaggagaaaaacgaaggca 545
            |||||||||||||||| |||||||
Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492

to top

>gb|AC007059.1|AC007059 Homo sapiens chromosome 19, cosmid R26549, complete sequence
          Length = 32303

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 542   ggcatgtttcttcaaaagccttgg 565
             ||||||||||| ||||||||||||
Sbjct: 27681 ggcatgtttctccaaaagccttgg 27704

to top

>dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 variant protein
          Length = 3163

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 522  tcgaagaggagaaaaacgaaggca 545
            |||||||||||||||| |||||||
Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,314,916
Number of Sequences: 3902068
Number of extensions: 5314916
Number of successful extensions: 114954
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114757
Number of HSP's gapped (non-prelim): 190
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result