>ATP4A_MOUSE (Q64436) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1032

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 542 RYQKYN--LGD*PGGDREAVRSRRRSCLDIHRQAVGGGGGRQKRQLELLR 399
           +Y+ Y+  LG  PGGD  A  S++++         GGGGG++K +LE ++
Sbjct: 4   KYELYSVELGSGPGGDMTAKMSKKKA---------GGGGGKKKEKLENMK 44

>CYB_CRYMA (Q1XIJ0) Cytochrome b|
          Length = 379

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +3

Query: 408 FELPLLPSAAAA------HRLPMDIEAGAAAGSDSLPVSPWLIAKIIFLIASWYTLSTCL 569
           F LP + +A A       H    +  +G ++ +D +P  P+   K I  +   + + TCL
Sbjct: 183 FILPFVITALAGVHLLFLHETGSNNPSGLSSDADKIPFHPYYTIKDILGVLLLFLVLTCL 242

Query: 570 TLYNKEMLG 596
            L++ ++LG
Sbjct: 243 VLFSPDLLG 251

>ATP4A_RAT (P09626) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1032

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 539 YQKYN--LGD*PGGDREAVRSRRRSCLDIHRQAVGGGGGRQKRQLELLR 399
           Y+ Y+  LG  PGGD  A  S++++         GGGGG++K +LE ++
Sbjct: 5   YELYSVELGTGPGGDMAAKMSKKKA---------GGGGGKKKEKLENMK 44

>ATP4A_RABIT (P27112) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1034

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 539 YQKYN--LGD*PGGDREAVRSRRRSCLDIHRQAVGGGGGRQKRQLELLR 399
           Y+ Y+  LG  PGGD  A  S+++          GGGGG++K +LE ++
Sbjct: 6   YELYSVELGPGPGGDMAAKMSKKKKA--------GGGGGKRKEKLENMK 46

>ATP4A_HUMAN (P20648) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1034

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 539 YQKYN--LGD*PGGDREAVRSRRRSCLDIHRQAVGGGGGRQKRQLELLR 399
           Y+ Y+  LG  PGGD  A  S+++          GGGGG++K +LE ++
Sbjct: 6   YELYSVELGPGPGGDMAAKMSKKKKA--------GGGGGKRKEKLENMK 46

>CYB_BLAHY (Q8W822) Cytochrome b|
          Length = 379

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +3

Query: 408 FELPLLPSAAAA------HRLPMDIEAGAAAGSDSLPVSPWLIAKIIFLIASWYTLSTCL 569
           F LP + +A A       H    +  +G A+ +D +P  P+   K I  +     + TCL
Sbjct: 183 FILPFVIAALAGVHLLFLHETGSNNPSGLASDADKIPFHPYYTIKDILGVLILILVLTCL 242

Query: 570 TLYNKEMLG 596
            L++ ++LG
Sbjct: 243 VLFSPDLLG 251

>CYB_CYNVO (Q76LN6) Cytochrome b|
          Length = 379

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 408 FELPLLPSAAAA------HRLPMDIEAGAAAGSDSLPVSPWLIAKIIFLIASWYTLSTCL 569
           F LP + SA A       H    +  +G  + SD +P  P+   K I  +    T+   L
Sbjct: 183 FILPFVISALAIVHLLFLHETGSNNPSGIPSNSDKIPFHPYYTIKDILGVLLLMTILLTL 242

Query: 570 TLYNKEMLG 596
           TL++ ++LG
Sbjct: 243 TLFSPDLLG 251

>CYB_BLACA (Q8WCL1) Cytochrome b|
          Length = 379

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +3

Query: 408 FELPLLPSAAAA------HRLPMDIEAGAAAGSDSLPVSPWLIAKIIFLIASWYTLSTCL 569
           F LP + +A A       H    +  +G ++ +D +P  P+   K I  +     + TCL
Sbjct: 183 FILPFVIAALAGVHLLFLHETGSNNPSGLSSDADKIPFHPYYTIKDILGVLILILVLTCL 242

Query: 570 TLYNKEMLG 596
            L++ ++LG
Sbjct: 243 VLFSPDLLG 251

>STV1_YEAST (P37296) Vacuolar ATP synthase subunit a, Golgi isoform (EC|
           3.6.3.14) (V-ATPase 101 kDa subunit) (V-ATPase subunit
           AC115) (Similar to VPH1 protein 1)
          Length = 890

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 504 SPWLIAKIIFLIASWYTLSTCLTLY 578
           SP  + K++FL A W+ L+ C+ ++
Sbjct: 826 SPLAVMKVVFLFAMWFVLTVCILVF 850

>CYB_CRYPR (Q8WCJ7) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 408 FELPLLPSAAAA------HRLPMDIEAGAAAGSDSLPVSPWLIAKIIFLIASWYTLSTCL 569
           F LP + +A A       H    +  +G  + +D +P  P+   K I  I     + TCL
Sbjct: 183 FILPFVIAALAGVHLLFLHETGSNNPSGLPSDADKIPFHPYYTIKDILGILLLILVLTCL 242

Query: 570 TLYNKEMLG 596
            L++ ++LG
Sbjct: 243 VLFSPDLLG 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,161,087
Number of Sequences: 219361
Number of extensions: 1033668
Number of successful extensions: 3178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)