ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal33e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
2dbj|AK119874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
4dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
5gb|AY105256.1| Zea mays PCO065087 mRNA sequence 139 1e-29
6ref|NM_001039386.1| Mus musculus nasal embryonic LHRH factor (Ne... 46 0.13
7ref|NM_001039387.1| Mus musculus nasal embryonic LHRH factor (Ne... 46 0.13
8ref|NM_020276.3| Mus musculus nasal embryonic LHRH factor (Nelf)... 46 0.13
9gb|BC006642.1| Mus musculus nasal embryonic LHRH factor, transcr... 46 0.13
10gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, co... 46 0.13
11dbj|AK158803.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.13
12dbj|AK165300.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 46 0.13
13dbj|AK019560.1| Mus musculus adult male testis cDNA, RIKEN full-... 46 0.13
14dbj|AK045384.1| Mus musculus adult male corpora quadrigemina cDN... 46 0.13
15dbj|AK004986.2| Mus musculus adult male liver cDNA, RIKEN full-l... 46 0.13
16dbj|AK041478.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 46 0.13
17dbj|AK053402.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 46 0.13
18gb|AF266508.2|AF266508 Mus musculus NELF protein mRNA, complete cds 46 0.13
19emb|AJ278902.1|MMU278902 Mus musculus mRNA for Jacob protein (ja... 46 0.13
20emb|AL732585.8| Mouse DNA sequence from clone RP23-226M2 on chro... 46 0.13
21emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on ch... 44 0.53
22emb|CR936705.1| Homo sapiens mRNA; cDNA DKFZp686C01106 (from clo... 44 0.53
23gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.11... 44 0.53
24gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, comp... 42 2.1
25gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete se... 42 2.1
26emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in... 42 2.1
27gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete seq... 42 2.1
28gb|AC154631.2| Mus musculus BAC clone RP23-264F8 from 16, comple... 42 2.1
29gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, co... 40 8.2
30ref|XM_953451.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.2
31ref|XM_328456.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.2
32gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, comp... 40 8.2
33gb|AY029366.1| Felis catus cyclophilin A (cypA) mRNA, complete cds 40 8.2
34gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, comp... 40 8.2
35ref|XM_991541.1| PREDICTED: Mus musculus membrane-associated rin... 40 8.2
36ref|XM_910671.1| PREDICTED: Mus musculus membrane-associated rin... 40 8.2
37ref|XM_619638.3| PREDICTED: Mus musculus membrane-associated rin... 40 8.2
38ref|XM_756893.1| Ustilago maydis 521 hypothetical protein (UM058... 40 8.2
39emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chr... 40 8.2
40gb|AC135204.3| Rattus norvegicus 1 BAC CH230-381D2 (Children's H... 40 8.2
41emb|AL158191.17| Human DNA sequence from clone RP11-309H15 on ch... 40 8.2
42emb|AL031178.1|HS341E18 Human DNA sequence from clone RP3-341E18... 40 8.2
43emb|CR450800.9| Zebrafish DNA sequence from clone DKEY-83F4 in l... 40 8.2
44gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.2
45gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete s... 40 8.2
46gb|AC073862.36| Homo sapiens 12q BAC RP11-243M5 (Roswell Park Ca... 40 8.2
47gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, comp... 40 8.2
48gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, compl... 40 8.2
49gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 8.2
50gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2... 40 8.2
51gb|AC008432.5| Homo sapiens chromosome 5 clone CTC-320C6, comple... 40 8.2
52ref|NM_001027337.1| Caenorhabditis elegans ZK1290.6 (ZK1290.6) m... 40 8.2
53ref|NM_001009370.1| Felis catus peptidylprolyl isomerase A (PPIA... 40 8.2
54gb|AC091620.3| Papio anubis clone RP41-400H11, complete sequence 40 8.2
55gb|AC116917.2| Homo sapiens chromosome 5 clone RP11-756G12, comp... 40 8.2
56gb|AC005155.1|AC005155 Homo sapiens PAC clone RP5-877J2 from 7p1... 40 8.2
57dbj|AK122502.1| Mus musculus mRNA for mKIAA1399 protein 40 8.2
58gb|BC098191.1| Mus musculus membrane-associated ring finger (C3H... 40 8.2
59emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chro... 40 8.2 
>dbj|AK119770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F01, full
            insert sequence
          Length = 2370

 Score =  230 bits (116), Expect = 4e-57
 Identities = 188/212 (88%)
 Strand = Plus / Plus

                                                                        
Query: 395  catgccaaccatggtcaaccccatcggaatcccccagcctccaccacctttgcctccaca 454
            |||| ||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1765 catggcaaccatggtcaaccccattgggattcctcagcctccaccacctttgcctccaca 1824

                                                                        
Query: 455  accacctgccgaggagcagccacctctacctgaggaaccagaacctaagaggcagagaac 514
            ||||||||| |||||||||||||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 1825 accacctgctgaggagcagccacctcaacctgatgaaccagaacctaaaaggctgagaac 1884

                                                                        
Query: 515  agatgatgcatctttgatcccagctgagcaattccttgctcagcatccgggccctgctcg 574
            |||||| || ||| | || ||||| || || |||||||||||||| ||||||||||||| 
Sbjct: 1885 agatgacgcttctcttataccagcagaacagttccttgctcagcacccgggccctgctca 1944

                                            
Query: 575  catatcagtttctgtgcccaacctggatgaag 606
            ||| ||||| ||||| |||||||| |||||||
Sbjct: 1945 catctcagtgtctgtacccaaccttgatgaag 1976



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 251  accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 303
            ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 1621 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 1673



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ggtccagctccacttccccg 97
            ||||||||||||||||||||
Sbjct: 1439 ggtccagctccacttccccg 1458
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>dbj|AK119874.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E06, full
            insert sequence
          Length = 2578

 Score =  230 bits (116), Expect = 4e-57
 Identities = 188/212 (88%)
 Strand = Plus / Plus

                                                                        
Query: 395  catgccaaccatggtcaaccccatcggaatcccccagcctccaccacctttgcctccaca 454
            |||| ||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1965 catggcaaccatggtcaaccccattgggattcctcagcctccaccacctttgcctccaca 2024

                                                                        
Query: 455  accacctgccgaggagcagccacctctacctgaggaaccagaacctaagaggcagagaac 514
            ||||||||| |||||||||||||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 2025 accacctgctgaggagcagccacctcgacctgatgaaccagaacctaaaaggctgagaac 2084

                                                                        
Query: 515  agatgatgcatctttgatcccagctgagcaattccttgctcagcatccgggccctgctcg 574
            |||||| || ||| | || ||||| || || |||||||||||||| ||||||||||||| 
Sbjct: 2085 agatgacgcttctcttataccagcagaacagttccttgctcagcacccgggccctgctca 2144

                                            
Query: 575  catatcagtttctgtgcccaacctggatgaag 606
            ||| ||||| ||||| |||||||| |||||||
Sbjct: 2145 catctcagtgtctgtacccaaccttgatgaag 2176



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 251  accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 303
            ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 1821 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 1873



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ggtccagctccacttccccg 97
            ||||||||||||||||||||
Sbjct: 1639 ggtccagctccacttccccg 1658
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  186 bits (94), Expect = 6e-44
 Identities = 151/170 (88%)
 Strand = Plus / Plus

                                                                           
Query: 395     catgccaaccatggtcaaccccatcggaatcccccagcctccaccacctttgcctccaca 454
               |||| ||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 8198080 catggcaaccatggtcaaccccattgggattcctcagcctccaccacctttgcctccaca 8198139

                                                                           
Query: 455     accacctgccgaggagcagccacctctacctgaggaaccagaacctaagaggcagagaac 514
               ||||||||| |||||||||||||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 8198140 accacctgctgaggagcagccacctcaacctgatgaaccagaacctaaaaggctgagaac 8198199

                                                                 
Query: 515     agatgatgcatctttgatcccagctgagcaattccttgctcagcatccgg 564
               |||||| || ||| | || ||||| || || |||||||||||||| ||||
Sbjct: 8198200 agatgacgcttctcttataccagcagaacagttccttgctcagcacccgg 8198249



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 563     gggccctgctcgcatatcagtttctgtgcccaacctggatgaag 606
               ||||||||||| ||| ||||| ||||| |||||||| |||||||
Sbjct: 8198380 gggccctgctcacatctcagtgtctgtacccaaccttgatgaag 8198423



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 251     accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 303
               ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 8197936 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 8197988



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ggtccagctccacttccccg 97
               ||||||||||||||||||||
Sbjct: 8197754 ggtccagctccacttccccg 8197773
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>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_F06
          Length = 130968

 Score =  186 bits (94), Expect = 6e-44
 Identities = 151/170 (88%)
 Strand = Plus / Plus

                                                                         
Query: 395   catgccaaccatggtcaaccccatcggaatcccccagcctccaccacctttgcctccaca 454
             |||| ||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 30226 catggcaaccatggtcaaccccattgggattcctcagcctccaccacctttgcctccaca 30285

                                                                         
Query: 455   accacctgccgaggagcagccacctctacctgaggaaccagaacctaagaggcagagaac 514
             ||||||||| |||||||||||||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 30286 accacctgctgaggagcagccacctcaacctgatgaaccagaacctaaaaggctgagaac 30345

                                                               
Query: 515   agatgatgcatctttgatcccagctgagcaattccttgctcagcatccgg 564
             |||||| || ||| | || ||||| || || |||||||||||||| ||||
Sbjct: 30346 agatgacgcttctcttataccagcagaacagttccttgctcagcacccgg 30395



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 563   gggccctgctcgcatatcagtttctgtgcccaacctggatgaag 606
             ||||||||||| ||| ||||| ||||| |||||||| |||||||
Sbjct: 30526 gggccctgctcacatctcagtgtctgtacccaaccttgatgaag 30569



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 251   accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 303
             ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 30082 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 30134



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    ggtccagctccacttccccg 97
             ||||||||||||||||||||
Sbjct: 29900 ggtccagctccacttccccg 29919
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>gb|AY105256.1| Zea mays PCO065087 mRNA sequence
          Length = 613

 Score =  139 bits (70), Expect = 1e-29
 Identities = 180/216 (83%), Gaps = 3/216 (1%)
 Strand = Plus / Plus

                                                                       
Query: 394 acatgccaaccatggtcaaccccatcggaatcccccagcctccaccacctt---tgcctc 450
           ||||||||  |||| |||| ||||| |||||||| ||||||||| ||||     ||||||
Sbjct: 165 acatgccacacatgatcaatcccattggaatccctcagcctccagcacccccactgcctc 224

                                                                       
Query: 451 cacaaccacctgccgaggagcagccacctctacctgaggaaccagaacctaagaggcaga 510
           | ||||| ||||| || ||||| || |||| ||| || ||||| ||||||||||||||||
Sbjct: 225 cgcaacctcctgctgaagagcaaccgcctccacccgatgaacccgaacctaagaggcaga 284

                                                                       
Query: 511 gaacagatgatgcatctttgatcccagctgagcaattccttgctcagcatccgggccctg 570
           ||||||| ||||  ||| | |||||||||||||| |||||||||||||||| ||| ||||
Sbjct: 285 gaacagacgatggttctcttatcccagctgagcagttccttgctcagcatcagggtcctg 344

                                               
Query: 571 ctcgcatatcagtttctgtgcccaacctggatgaag 606
           || |||| || || ||||| |||||||| |||||||
Sbjct: 345 ctagcatctctgtatctgtacccaacctcgatgaag 380
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>ref|NM_001039386.1| Mus musculus nasal embryonic LHRH factor (Nelf), transcript variant
           1, mRNA
          Length = 2949

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 780 ggagcagccacctctacctgagg 802
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>ref|NM_001039387.1| Mus musculus nasal embryonic LHRH factor (Nelf), transcript variant
           2, mRNA
          Length = 2943

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 780 ggagcagccacctctacctgagg 802
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>ref|NM_020276.3| Mus musculus nasal embryonic LHRH factor (Nelf), transcript variant
           3, mRNA
          Length = 2880

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 780 ggagcagccacctctacctgagg 802
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>gb|BC006642.1| Mus musculus nasal embryonic LHRH factor, transcript variant 2,
           mRNA (cDNA clone MGC:7230 IMAGE:3483536), complete cds
          Length = 2949

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 738 ggagcagccacctctacctgagg 760
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>gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, complete sequence
          Length = 208207

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 467   ggagcagccacctctacctgagg 489
             |||||||||||||||||||||||
Sbjct: 13025 ggagcagccacctctacctgagg 13047
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>dbj|AK158803.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K430328A15 product:nasal embryonic LHRH
           factor, full insert sequence
          Length = 2662

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 579 ggagcagccacctctacctgagg 601
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>dbj|AK165300.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430011A19 product:nasal embryonic LHRH
           factor, full insert sequence
          Length = 2863

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 725 ggagcagccacctctacctgagg 747
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>dbj|AK019560.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930404B01 product:nasal embryonic LHRH
           factor, full insert sequence
          Length = 2129

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 747 ggagcagccacctctacctgagg 769
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>dbj|AK045384.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230112A04
           product:nasal embryonic LHRH factor, full insert
           sequence
          Length = 4607

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 775 ggagcagccacctctacctgagg 797
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>dbj|AK004986.2| Mus musculus adult male liver cDNA, RIKEN full-length enriched
           library, clone:1300013E15 product:nasal embryonic LHRH
           factor, full insert sequence
          Length = 2923

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 777 ggagcagccacctctacctgagg 799
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>dbj|AK041478.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630014A09 product:nasal embryonic LHRH
           factor, full insert sequence
          Length = 1571

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 757 ggagcagccacctctacctgagg 779
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>dbj|AK053402.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130014F11 product:NASAL EMBRYONIC LHRH
           FACTOR homolog [Mus musculus], full insert sequence
          Length = 2783

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 727 ggagcagccacctctacctgagg 749
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>gb|AF266508.2|AF266508 Mus musculus NELF protein mRNA, complete cds
          Length = 2828

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 746 ggagcagccacctctacctgagg 768
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>emb|AJ278902.1|MMU278902 Mus musculus mRNA for Jacob protein (jac gene)
          Length = 1599

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 467 ggagcagccacctctacctgagg 489
           |||||||||||||||||||||||
Sbjct: 558 ggagcagccacctctacctgagg 580
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>emb|AL732585.8| Mouse DNA sequence from clone RP23-226M2 on chromosome 2, complete
             sequence
          Length = 151891

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 467   ggagcagccacctctacctgagg 489
             |||||||||||||||||||||||
Sbjct: 98583 ggagcagccacctctacctgagg 98605
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>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a
              novel gene, complete sequence
          Length = 143508

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 436    caccacctttgcctccacaacc 457
              ||||||||||||||||||||||
Sbjct: 139920 caccacctttgcctccacaacc 139941
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>emb|CR936705.1| Homo sapiens mRNA; cDNA DKFZp686C01106 (from clone DKFZp686C01106)
          Length = 9298

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 436  caccacctttgcctccacaacc 457
            ||||||||||||||||||||||
Sbjct: 6926 caccacctttgcctccacaacc 6947
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>gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.1171_I_10, complete sequence
          Length = 175120

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    ggtggagaagaacagggtgatg 72
             ||||||||||||||||||||||
Sbjct: 91469 ggtggagaagaacagggtgatg 91490
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>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence
          Length = 268129

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    actttccttggtcaatgttcc 151
              |||||||||||||||||||||
Sbjct: 142534 actttccttggtcaatgttcc 142514
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>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 486   gaggaaccagaacctaagaggcaga 510
             |||||||||||||| ||||||||||
Sbjct: 26975 gaggaaccagaaccgaagaggcaga 26951
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>emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in linkage group 5,
             complete sequence
          Length = 150883

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   tccctccaccgcctccaggccataa 334
             |||||||||| ||||||||||||||
Sbjct: 54831 tccctccacctcctccaggccataa 54855
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>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
          Length = 99712

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 486   gaggaaccagaacctaagaggcaga 510
             |||||||||||||| ||||||||||
Sbjct: 16492 gaggaaccagaaccgaagaggcaga 16468
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>gb|AC154631.2| Mus musculus BAC clone RP23-264F8 from 16, complete sequence
          Length = 201820

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 492    ccagaacctaagaggcagaga 512
              |||||||||||||||||||||
Sbjct: 110130 ccagaacctaagaggcagaga 110150
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>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence
          Length = 191726

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   cctccaccacctttgcctcc 451
             ||||||||||||||||||||
Sbjct: 87279 cctccaccacctttgcctcc 87260
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>ref|XM_953451.1| Neurospora crassa OR74A hypothetical protein (NCU07751.1) partial
           mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gtatccctccaccgcctcca 326
           ||||||||||||||||||||
Sbjct: 288 gtatccctccaccgcctcca 307
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>ref|XM_328456.1| Neurospora crassa OR74A hypothetical protein (NCU07751.1) partial
           mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gtatccctccaccgcctcca 326
           ||||||||||||||||||||
Sbjct: 288 gtatccctccaccgcctcca 307
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>gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, complete sequence
          Length = 156796

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 425   cccccagcctccaccacctttgcc 448
             |||||||||| |||||||||||||
Sbjct: 43946 cccccagcctgcaccacctttgcc 43969
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>gb|AY029366.1| Felis catus cyclophilin A (cypA) mRNA, complete cds
          Length = 738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 aaccatggtcaaccccatcg 420
           ||||||||||||||||||||
Sbjct: 21  aaccatggtcaaccccatcg 40
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>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence
          Length = 193216

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    cctccaccacctttgcctcc 451
              ||||||||||||||||||||
Sbjct: 156205 cctccaccacctttgcctcc 156224
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>ref|XM_991541.1| PREDICTED: Mus musculus membrane-associated ring finger (C3HC4) 4
           (March4), mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 432 cctccaccacctttgcctcc 451
           ||||||||||||||||||||
Sbjct: 316 cctccaccacctttgcctcc 335
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>ref|XM_910671.1| PREDICTED: Mus musculus membrane-associated ring finger (C3HC4) 4
           (March4), mRNA
          Length = 1239

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 432 cctccaccacctttgcctcc 451
           ||||||||||||||||||||
Sbjct: 316 cctccaccacctttgcctcc 335
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>ref|XM_619638.3| PREDICTED: Mus musculus membrane-associated ring finger (C3HC4) 4
            (March4), mRNA
          Length = 4912

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  cctccaccacctttgcctcc 451
            ||||||||||||||||||||
Sbjct: 2470 cctccaccacctttgcctcc 2489
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>ref|XM_756893.1| Ustilago maydis 521 hypothetical protein (UM05839.1) partial mRNA
          Length = 4305

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 431  gcctccaccacctttgcctccaca 454
            |||||||||||||||||| |||||
Sbjct: 988  gcctccaccacctttgccgccaca 1011
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>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete
             sequence
          Length = 129844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 501   aagaggcagagaacagatgatgca 524
             |||| |||||||||||||||||||
Sbjct: 59481 aagatgcagagaacagatgatgca 59504
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>gb|AC135204.3| Rattus norvegicus 1 BAC CH230-381D2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 183322

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   ctaagaggcagagaacagat 518
             ||||||||||||||||||||
Sbjct: 76881 ctaagaggcagagaacagat 76862
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>emb|AL158191.17| Human DNA sequence from clone RP11-309H15 on chromosome 13, complete
             sequence
          Length = 80598

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   tatgcatccacctctgccac 252
             ||||||||||||||||||||
Sbjct: 43939 tatgcatccacctctgccac 43958
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>emb|AL031178.1|HS341E18 Human DNA sequence from clone RP3-341E18 on chromosome 6p11.2-12.3
            Contains the KIAA0936 gene for a MAK-related kinase, a
            novel gene for NY-REN-57 antigen and CpG islands,
            complete sequence
          Length = 92558

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 586  ctgtgcccaacctggatgaa 605
            ||||||||||||||||||||
Sbjct: 8950 ctgtgcccaacctggatgaa 8969
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>emb|CR450800.9| Zebrafish DNA sequence from clone DKEY-83F4 in linkage group 8,
             complete sequence
          Length = 120875

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   atatgatgtccaatatgcat 239
             ||||||||||||||||||||
Sbjct: 94133 atatgatgtccaatatgcat 94114
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      ccaggtccagctccacttcc 94
               ||||||||||||||||||||
Sbjct: 5635284 ccaggtccagctccacttcc 5635265
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>gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete sequence
          Length = 117864

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     atcggtggagaagaacaggg 67
              ||||||||||||||||||||
Sbjct: 114353 atcggtggagaagaacaggg 114334
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>gb|AC073862.36| Homo sapiens 12q BAC RP11-243M5 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 71517

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   atcccccagcctccaccacc 442
             ||||||||||||||||||||
Sbjct: 12701 atcccccagcctccaccacc 12720
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>gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, complete sequence
          Length = 175529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    ctttgcctccacaaccacct 461
              ||||||||||||||||||||
Sbjct: 122175 ctttgcctccacaaccacct 122194
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>gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, complete sequence
          Length = 211001

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    atcccccagcctccaccacc 442
              ||||||||||||||||||||
Sbjct: 138205 atcccccagcctccaccacc 138186
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    aggatgtcaggtcccatggg 292
              ||||||||||||||||||||
Sbjct: 191656 aggatgtcaggtcccatggg 191637
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>gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2o12, complete sequence
          Length = 89504

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    atcggtggagaagaacaggg 67
             ||||||||||||||||||||
Sbjct: 14114 atcggtggagaagaacaggg 14095
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>gb|AC008432.5| Homo sapiens chromosome 5 clone CTC-320C6, complete sequence
          Length = 170216

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 432    cctccaccacctttgcctccacaa 455
              |||||| |||||||||||||||||
Sbjct: 162266 cctccagcacctttgcctccacaa 162243
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>ref|NM_001027337.1| Caenorhabditis elegans ZK1290.6 (ZK1290.6) mRNA, complete cds
          Length = 1549

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 432 cctccaccacctttgcctcc 451
           ||||||||||||||||||||
Sbjct: 158 cctccaccacctttgcctcc 139
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>ref|NM_001009370.1| Felis catus peptidylprolyl isomerase A (PPIA), mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 aaccatggtcaaccccatcg 420
           ||||||||||||||||||||
Sbjct: 21  aaccatggtcaaccccatcg 40
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>gb|AC091620.3| Papio anubis clone RP41-400H11, complete sequence
          Length = 119638

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 425   cccccagcctccaccacctttgcc 448
             |||||||||| |||||||||||||
Sbjct: 12807 cccccagcctgcaccacctttgcc 12784
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>gb|AC116917.2| Homo sapiens chromosome 5 clone RP11-756G12, complete sequence
          Length = 165764

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 432    cctccaccacctttgcctccacaa 455
              |||||| |||||||||||||||||
Sbjct: 114580 cctccagcacctttgcctccacaa 114603
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>gb|AC005155.1|AC005155 Homo sapiens PAC clone RP5-877J2 from 7p14-p15, complete sequence
          Length = 127282

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 425   cccccagcctccaccacctttgcc 448
             |||||||||| |||||||||||||
Sbjct: 19472 cccccagcctgcaccacctttgcc 19449
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>dbj|AK122502.1| Mus musculus mRNA for mKIAA1399 protein
          Length = 4547

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  cctccaccacctttgcctcc 451
            ||||||||||||||||||||
Sbjct: 2109 cctccaccacctttgcctcc 2128
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>gb|BC098191.1| Mus musculus membrane-associated ring finger (C3HC4) 4, mRNA (cDNA
            clone MGC:107707 IMAGE:6832500), complete cds
          Length = 4217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  cctccaccacctttgcctcc 451
            ||||||||||||||||||||
Sbjct: 1743 cctccaccacctttgcctcc 1762
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>emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chromosome X, complete
             sequence
          Length = 198740

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   tccctatgccccctcccccg 383
             ||||||||||||||||||||
Sbjct: 42870 tccctatgccccctcccccg 42889


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,146,262
Number of Sequences: 3902068
Number of extensions: 5146262
Number of successful extensions: 99871
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99701
Number of HSP's gapped (non-prelim): 170
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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