>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877|
          Length = 164

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 32/131 (24%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
 Frame = +2

Query: 17  RVLRLRDSTPHHAIVLKMEDGS-DLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEM 193
           RV+ +R   P +  VL + + + D  LPI + ++ +  +    + +  PRP  +++++++
Sbjct: 5   RVVGIRVEQPQNQPVLLLREANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDL 64

Query: 194 TEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVN 373
              +G++++ VRI ++    +Y+ L   +       I    +PSD++ IA R  VPI V 
Sbjct: 65  IAALGHSLKEVRIVDLQEGTFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVE 118

Query: 374 KRIAYNNGLKV 406
           + +    GL +
Sbjct: 119 EAVLAQAGLLI 129

>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)|
           (Keratin-4) (K4)
          Length = 534

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +2

Query: 167 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 340
           T +N++++ T     T    +  E + + Y S  R  L   GN++  +  +LK       
Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235

Query: 341 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVNSDQIQYARLDKPGDQ 484
            F+ K   ++NKR A  N   V++     +Y+N  +++ A++D   D+
Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLNKVELE-AKVDSLNDE 282

>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing|
           protein 1 (GTF2I repeat domain-containing protein 1)
           (Muscle TFII-I repeat domain-containing protein 1)
           (General transcription factor III) (Slow-muscle-fiber
           enhancer binding
          Length = 959

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +2

Query: 245 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 424
           +DA  SR+ +A T  E+    F+ K  +A+ I +  +VP    KRI  N G  +I+  P 
Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748

Query: 425 G 427
           G
Sbjct: 749 G 749

>VNST_CVMJH (P26625) 30 kDa nonstructural protein (NS2 protein) (Protein 2A)|
          Length = 265

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 42  RLTMLSCSRWKMGAIFCSPLLSWRHQVLCYWPP 140
           RL ++     K+G  +CS L  W  + LCY PP
Sbjct: 165 RLELVKIGSSKVGGFYCSELSIWCGERLCYKPP 197

>ATC1_DUNBI (P54209) Cation-transporting ATPase CA1 (EC 3.6.3.-)|
          Length = 1037

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 6/141 (4%)
 Frame = +2

Query: 23  LRLRDSTPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEMTEM 202
           +    STP   ++LK  D  DLL+ I++       ++A      I    I  +V  +  +
Sbjct: 64  MEAEQSTPLWKLILKQFD--DLLVKILLGAAIVDFIIAISEGESIQSGLIEPMVILLILV 121

Query: 203 MGYTVRLV------RITEMVHDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPI 364
              TV +V      +  E +         + + G  + + S D+ P D + +A   KVP 
Sbjct: 122 ANATVGVVTERNAEKAIEQLKSYEADDATVLRNGQLQLIPSADIVPGDIVELAVGNKVPA 181

Query: 365 QVNKRIAYNNGLKVIQPKPTG 427
                  Y   LK+ Q   TG
Sbjct: 182 DTRVSHIYTTSLKIDQSLLTG 202

>ION3_CARAU (P18520) Intermediate filament protein ON3|
          Length = 520

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +2

Query: 236 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 409
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214

Query: 410 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 511
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247

>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857|
          Length = 508

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +2

Query: 113 TPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD-AYYSRLYLAKTGN 289
           TP  +L+AA   +   RP      +E  E   Y  RL+++ E+     Y  + Y  + G 
Sbjct: 402 TPEAVLVAAADALSAARP---GARRESLE--NYIKRLMKLEEIAKSFKYVEKAYAIQAGR 456

Query: 290 EEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 409
           E  VI    K  DA+       +  ++ + + Y   LKV+
Sbjct: 457 EIRVIVEPDKVDDALAEKLAYDISKKIEEELEYPGVLKVV 496

>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)|
           (Keratin-8) (K8)
          Length = 520

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +2

Query: 236 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 409
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220

Query: 410 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 511
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253

>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 613

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 524 MLVAAVEERYKDAAQYRD 577
           M  AA +ERY+DAA+YRD
Sbjct: 211 MAAAAADERYEDAARYRD 228

>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = +2

Query: 257 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYV 436
           Y R YL     E   +  +LK  + +   F+ K   ++NKR A  N    ++     +Y+
Sbjct: 257 YLRSYLDNILGERGRLDSELKNMEDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDSAYM 316

Query: 437 NSDQIQYARLDKPGDQPCFEAQEFD 511
           N  ++Q A++D   D+  F    +D
Sbjct: 317 NKVELQ-AKVDALIDEIDFLRTLYD 340

>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1|
           (Adrenoleukodystrophy protein) (ALDP)
          Length = 736

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 170 IYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEE 298
           I +  KE+TE+ GYT R+  + ++  D  + R    +TG+ EE
Sbjct: 402 IMSSYKEVTELAGYTARVYEMFQVFEDVKHCR--FKRTGDLEE 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,669,180
Number of Sequences: 219361
Number of extensions: 1900492
Number of successful extensions: 5399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5398
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)