| Clone Name | baal32m24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191136.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1392 Score = 571 bits (288), Expect = e-159 Identities = 459/516 (88%) Strand = Plus / Plus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||| Sbjct: 161 acccgacgctgctctacaacgtgctgcgcaaccggttcgaggcggagttccggtggtggg 220 Query: 62 accgcgtcgaccagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtt 121 |||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||| Sbjct: 221 accgagtcgaccagtatattttgctaggtgctgttcctttcccaagtgatgttccacgtt 280 Query: 122 tgaagcaacttggagttcagggagttgtaacattgaatgagccttatgagactctggtgc 181 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct: 281 tgaagcaacttggagttcagggagttgtaacattgaatgaggcttatgagaccctggtcc 340 Query: 182 caatgtccttgtaccaggcccatgggattgatcaccttgtgattgccacaagagactacc 241 ||| || || |||||||||||||||||||| |||||| | ||| ||||||||||||||| Sbjct: 341 caacatctttataccaggcccatgggattgaccaccttattattcccacaagagactacc 400 Query: 242 tcttcgcaccatccctcgaagatatttgtcaagccatcgattttatccaccgtaatgctt 301 | || |||||| ||||| | ||||||||||||||||| |||||||||||||| ||||| | Sbjct: 401 tgtttgcaccagccctccaggatatttgtcaagccatagattttatccaccggaatgcat 460 Query: 302 cacacggtggtactacttatgttcactgtaaagctggaagaggacgaagcaccactattg 361 || | ||||| | |||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 461 cagaaggtggcattacttatgttcactgtaaagctggaagagggcgtagcacgactattg 520 Query: 362 ttttgtgctatttgatcaaatataggaacatgactcctgaagcagctttggatcatgtac 421 ||||||| ||| |||| |||||| ||| ||||| ||| |||||||| || |||||||| | Sbjct: 521 ttttgtgttatctgattaaatatcggagcatgagtccagaagcagcattagatcatgtcc 580 Query: 422 gatccattaggccccgagtgcttttggcaccatcacagtggcaggctgttatcgtattta 481 ||||||||||||| |||| |||||||||||||| |||||||||||||| | ||| |||| Sbjct: 581 gatccattaggcctagagtacttttggcaccatcgcagtggcaggctgtcaacgttttta 640 Query: 482 gcactctcaccactggacgtcttccagtacagagta 517 | || |||||||| || ||||||||| ||||||||| Sbjct: 641 gtaccctcaccaccgggcgtcttccaatacagagta 676
>dbj|AK073172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022G13, full insert sequence Length = 1471 Score = 571 bits (288), Expect = e-159 Identities = 459/516 (88%) Strand = Plus / Plus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||| Sbjct: 323 acccgacgctgctctacaacgtgctgcgcaaccggttcgaggcggagttccggtggtggg 382 Query: 62 accgcgtcgaccagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtt 121 |||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||| Sbjct: 383 accgagtcgaccagtatattttgctaggtgctgttcctttcccaagtgatgttccacgtt 442 Query: 122 tgaagcaacttggagttcagggagttgtaacattgaatgagccttatgagactctggtgc 181 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct: 443 tgaagcaacttggagttcagggagttgtaacattgaatgaggcttatgagaccctggtcc 502 Query: 182 caatgtccttgtaccaggcccatgggattgatcaccttgtgattgccacaagagactacc 241 ||| || || |||||||||||||||||||| |||||| | ||| ||||||||||||||| Sbjct: 503 caacatctttataccaggcccatgggattgaccaccttattattcccacaagagactacc 562 Query: 242 tcttcgcaccatccctcgaagatatttgtcaagccatcgattttatccaccgtaatgctt 301 | || |||||| ||||| | ||||||||||||||||| |||||||||||||| ||||| | Sbjct: 563 tgtttgcaccagccctccaggatatttgtcaagccatagattttatccaccggaatgcat 622 Query: 302 cacacggtggtactacttatgttcactgtaaagctggaagaggacgaagcaccactattg 361 || | ||||| | |||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 623 cagaaggtggcattacttatgttcactgtaaagctggaagagggcgtagcacgactattg 682 Query: 362 ttttgtgctatttgatcaaatataggaacatgactcctgaagcagctttggatcatgtac 421 ||||||| ||| |||| |||||| ||| ||||| ||| |||||||| || |||||||| | Sbjct: 683 ttttgtgttatctgattaaatatcggagcatgagtccagaagcagcattagatcatgtcc 742 Query: 422 gatccattaggccccgagtgcttttggcaccatcacagtggcaggctgttatcgtattta 481 ||||||||||||| |||| |||||||||||||| |||||||||||||| | ||| |||| Sbjct: 743 gatccattaggcctagagtacttttggcaccatcgcagtggcaggctgtcaacgttttta 802 Query: 482 gcactctcaccactggacgtcttccagtacagagta 517 | || |||||||| || ||||||||| ||||||||| Sbjct: 803 gtaccctcaccaccgggcgtcttccaatacagagta 838
>dbj|AK071990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090B20, full insert sequence Length = 1613 Score = 280 bits (141), Expect = 5e-72 Identities = 402/489 (82%) Strand = Plus / Plus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| |||||||||||||| ||||||| |||||| | |||||||||||||||| Sbjct: 320 acccgacgctgctctacaacgtcctccgcaaccggttcgagtctgagttccggtggtggg 379 Query: 62 accgcgtcgaccagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtt 121 | ||| ||||||||| | |||||||||| || || |||||| | |||||||| || | | Sbjct: 380 atcgcatcgaccagtatgttttgctaggtgctgtccctttctctagtgatgtaccgcatc 439 Query: 122 tgaagcaacttggagttcagggagttgtaacattgaatgagccttatgagactctggtgc 181 | |||||||||||||| ||| ||||| ||| ||||||| | ||||| |||||||| | Sbjct: 440 tcaagcaacttggagtaaggggcgttgtcacactgaatgaatcgtatgaaactctggttc 499 Query: 182 caatgtccttgtaccaggcccatgggattgatcaccttgtgattgccacaagagactacc 241 ||| ||||| |||||||| || ||||| |||| || | |||| |||| || ||||| | Sbjct: 500 caacatccttataccaggctcacgggatcaatcatctcgagattcccacgagggactatc 559 Query: 242 tcttcgcaccatccctcgaagatatttgtcaagccatcgattttatccaccgtaatgctt 301 | || || || || || || ||||| |||||||| |||||||||| ||| | ||||| | Sbjct: 560 tatttgccccttctctagaggatatctgtcaagctgtcgattttattcactgaaatgcat 619 Query: 302 cacacggtggtactacttatgttcactgtaaagctggaagaggacgaagcaccactattg 361 |||| ||||||| |||||||| || ||||| |||||||| ||||||||||||||||| | Sbjct: 620 cacaaggtggtagcacttatgtacattgtaaggctggaaggggacgaagcaccactatag 679 Query: 362 ttttgtgctatttgatcaaatataggaacatgactcctgaagcagctttggatcatgtac 421 |||| ||||||||||| || || |||||||||||||||||||| ||||| ||||||| || Sbjct: 680 ttttatgctatttgattaagtacaggaacatgactcctgaagctgctttagatcatgcac 739 Query: 422 gatccattaggccccgagtgcttttggcaccatcacagtggcaggctgttatcgtattta 481 | || | |||||| |||| ||||| |||||||| || ||||||||||||| |||||| Sbjct: 740 ggtctgtaaggcccagagtacttttagcaccatctcaatggcaggctgttaaattattta 799 Query: 482 gcactctca 490 ||| ||||| Sbjct: 800 gcaatctca 808
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 106/112 (94%) Strand = Plus / Plus Query: 73 cagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtttgaagcaactt 132 |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 30862699 cagtatattttgctaggtgctgttcctttcccaagtgatgttccacgtttgaagcaactt 30862758 Query: 133 ggagttcagggagttgtaacattgaatgagccttatgagactctggtgccaa 184 |||||||||||||||||||||||||||||| |||||||||| ||||| |||| Sbjct: 30862759 ggagttcagggagttgtaacattgaatgaggcttatgagaccctggtcccaa 30862810 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 196 caggcccatgggattgatcaccttgtgattgccacaagagactacctcttcgcaccatcc 255 ||||||||||||||||| |||||| | ||| |||||||||||||||| || |||||| || Sbjct: 30863101 caggcccatgggattgaccaccttattattcccacaagagactacctgtttgcaccagcc 30863160 Query: 256 ctcgaagatatttgtcaagccatcgattttatccaccgtaa 296 ||| | ||||||||||||||||| ||||||||||||||||| Sbjct: 30863161 ctccaggatatttgtcaagccatagattttatccaccgtaa 30863201 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||| Sbjct: 30862106 acccgacgctgctctacaacgtgctgcgcaaccggttcgaggcggagttccggtggtggg 30862165 Query: 62 accgcgtcgaccag 75 |||| ||||||||| Sbjct: 30862166 accgagtcgaccag 30862179 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 379 aaatataggaacatgactcctgaagcagctttggatcatgtacgatccattaggccccga 438 |||||| ||| ||||| ||| |||||||| || |||||||| |||||||||||||| || Sbjct: 30863987 aaatatcggagcatgagtccagaagcagcattagatcatgtccgatccattaggcctaga 30864046 Query: 439 gtgcttttggcaccatcacagtggcagg 466 || |||||||||||||| |||||||||| Sbjct: 30864047 gtacttttggcaccatcgcagtggcagg 30864074 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 315 tacttatgttcactgtaaagctggaagaggacgaagcaccactattgttttgtg 368 |||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 30863841 tacttatgttcactgtaaagctggaagagggcgtagcacgactattgttttgtg 30863894 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 tcccaagtgatgttccacgtttg 123 ||||||||||||||||||||||| Sbjct: 40916655 tcccaagtgatgttccacgtttg 40916633
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 174 bits (88), Expect = 2e-40 Identities = 106/112 (94%) Strand = Plus / Plus Query: 73 cagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtttgaagcaactt 132 |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 63066 cagtatattttgctaggtgctgttcctttcccaagtgatgttccacgtttgaagcaactt 63125 Query: 133 ggagttcagggagttgtaacattgaatgagccttatgagactctggtgccaa 184 |||||||||||||||||||||||||||||| |||||||||| ||||| |||| Sbjct: 63126 ggagttcagggagttgtaacattgaatgaggcttatgagaccctggtcccaa 63177 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 196 caggcccatgggattgatcaccttgtgattgccacaagagactacctcttcgcaccatcc 255 ||||||||||||||||| |||||| | ||| |||||||||||||||| || |||||| || Sbjct: 63468 caggcccatgggattgaccaccttattattcccacaagagactacctgtttgcaccagcc 63527 Query: 256 ctcgaagatatttgtcaagccatcgattttatccaccgtaa 296 ||| | ||||||||||||||||| ||||||||||||||||| Sbjct: 63528 ctccaggatatttgtcaagccatagattttatccaccgtaa 63568 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||| Sbjct: 62473 acccgacgctgctctacaacgtgctgcgcaaccggttcgaggcggagttccggtggtggg 62532 Query: 62 accgcgtcgaccag 75 |||| ||||||||| Sbjct: 62533 accgagtcgaccag 62546 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 379 aaatataggaacatgactcctgaagcagctttggatcatgtacgatccattaggccccga 438 |||||| ||| ||||| ||| |||||||| || |||||||| |||||||||||||| || Sbjct: 64354 aaatatcggagcatgagtccagaagcagcattagatcatgtccgatccattaggcctaga 64413 Query: 439 gtgcttttggcaccatcacagtggcagg 466 || |||||||||||||| |||||||||| Sbjct: 64414 gtacttttggcaccatcgcagtggcagg 64441 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 315 tacttatgttcactgtaaagctggaagaggacgaagcaccactattgttttgtg 368 |||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 64208 tacttatgttcactgtaaagctggaagagggcgtagcacgactattgttttgtg 64261
>gb|DQ167208.1| Zea mays dual-specificity protein-like phosphatase 4 mRNA, complete cds Length = 1116 Score = 172 bits (87), Expect = 9e-40 Identities = 333/415 (80%) Strand = Plus / Plus Query: 4 ccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtgggac 63 |||||||| ||||||||||| || ||||||| ||||| | ||||||||| |||||||| Sbjct: 160 ccgacgcttctctacaacgtgctccgcaaccggttcgatggcgagttccgctggtgggat 219 Query: 64 cgcgtcgaccagtgtattttgctaggagccgttcctttcccaagtgatgttccacgtttg 123 ||| ||||| ||| | |||||||||| || ||||| ||| | || ||||||| || || Sbjct: 220 cgcatcgacaagtatgttttgctaggtgctgttccgttctctagcgatgttctgcgcctg 279 Query: 124 aagcaacttggagttcagggagttgtaacattgaatgagccttatgagactctggtgcca 183 ||||||||||| || |||||||| ||| | ||||| || ||||| |||||||| ||| Sbjct: 280 aagcaacttggtgtaagaggagttgttacactcaatgaaccctatgaaactctggttcca 339 Query: 184 atgtccttgtaccaggcccatgggattgatcaccttgtgattgccacaagagactacctc 243 | ||||| |||||||| ||||| || |||| || ||| | |||||||||||||| Sbjct: 340 acatccttataccaggctcatggaatcaatcatctcaaaattcctacaagagactacctg 399 Query: 244 ttcgcaccatccctcgaagatatttgtcaagccatcgattttatccaccgtaatgcttca 303 || || |||||||| || ||||||||| || | ||||||||||| |||||| Sbjct: 400 tttgccccatccctggagcatatttgtcgtgcagtggattttatccattgtaatgaagtg 459 Query: 304 cacggtggtactacttatgttcactgtaaagctggaagaggacgaagcaccactattgtt 363 || ||||||| || ||||| |||||||| |||||||| ||||||||||||||||| ||| Sbjct: 460 caaggtggtagcacctatgtccactgtaaggctggaaggggacgaagcaccactatagtt 519 Query: 364 ttgtgctatttgatcaaatataggaacatgactcctgaagcagctttggatcatg 418 ||||| | ||||||||| || || || ||||||||||||| |||||||||||||| Sbjct: 520 ttgtgttttttgatcaagtacagaaatatgactcctgaagtagctttggatcatg 574
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| |||||||||||||| ||||||| |||||| | |||||||||||||||| Sbjct: 132514 acccgacgctgctctacaacgtcctccgcaaccggttcgagtctgagttccggtggtggg 132455 Query: 62 accgcgtcgaccag 75 | ||| |||||||| Sbjct: 132454 atcgcatcgaccag 132441 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 295 aatgcttcacacggtggtactacttatgttcactgtaaagctggaagaggacgaagcacc 354 ||||| ||||| ||||||| |||||||| || ||||| |||||||| |||||||||||| Sbjct: 130861 aatgcatcacaaggtggtagcacttatgtacattgtaaggctggaaggggacgaagcacc 130802 Query: 355 actattgttttgtgctatttg 375 ||||| ||||| ||||||||| Sbjct: 130801 actatagttttatgctatttg 130781 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 385 aggaacatgactcctgaagcagctttggatcatgtacgatccattaggccccgagtgctt 444 |||||||||||||||||||| ||||| ||||||| ||| || | |||||| |||| ||| Sbjct: 130678 aggaacatgactcctgaagctgctttagatcatgcacggtctgtaaggcccagagtactt 130619 Query: 445 ttggcaccatcacagtggcaggc 467 || |||||||| || |||||||| Sbjct: 130618 ttagcaccatctcaatggcaggc 130596 Score = 48.1 bits (24), Expect = 0.034 Identities = 96/120 (80%) Strand = Plus / Minus Query: 80 ttttgctaggagccgttcctttcccaagtgatgttccacgtttgaagcaacttggagttc 139 |||||||||| || || |||||| | |||||||| || | | | |||||||||||||| Sbjct: 131838 ttttgctaggtgctgtccctttctctagtgatgtaccgcatctcaagcaacttggagtaa 131779 Query: 140 agggagttgtaacattgaatgagccttatgagactctggtgccaatgtccttgtaccagg 199 ||| ||||| ||| ||||||| | ||||| |||||||| |||| ||||| ||||||| Sbjct: 131778 ggggcgttgtcacactgaatgaatcgtatgaaactctggttccaacatccttataccagg 131719
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 2 acccgacgctcctctacaacgtcctgcgcaaccaattcgaggccgagttccggtggtggg 61 |||||||||| |||||||||||||| ||||||| |||||| | |||||||||||||||| Sbjct: 25890982 acccgacgctgctctacaacgtcctccgcaaccggttcgagtctgagttccggtggtggg 25890923 Query: 62 accgcgtcgaccag 75 | ||| |||||||| Sbjct: 25890922 atcgcatcgaccag 25890909 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 295 aatgcttcacacggtggtactacttatgttcactgtaaagctggaagaggacgaagcacc 354 ||||| ||||| ||||||| |||||||| || ||||| |||||||| |||||||||||| Sbjct: 25889329 aatgcatcacaaggtggtagcacttatgtacattgtaaggctggaaggggacgaagcacc 25889270 Query: 355 actattgttttgtgctatttg 375 ||||| ||||| ||||||||| Sbjct: 25889269 actatagttttatgctatttg 25889249 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 385 aggaacatgactcctgaagcagctttggatcatgtacgatccattaggccccgagtgctt 444 |||||||||||||||||||| ||||| ||||||| ||| || | |||||| |||| ||| Sbjct: 25889146 aggaacatgactcctgaagctgctttagatcatgcacggtctgtaaggcccagagtactt 25889087 Query: 445 ttggcaccatcacagtggcaggc 467 || |||||||| || |||||||| Sbjct: 25889086 ttagcaccatctcaatggcaggc 25889064 Score = 48.1 bits (24), Expect = 0.034 Identities = 96/120 (80%) Strand = Plus / Minus Query: 80 ttttgctaggagccgttcctttcccaagtgatgttccacgtttgaagcaacttggagttc 139 |||||||||| || || |||||| | |||||||| || | | | |||||||||||||| Sbjct: 25890306 ttttgctaggtgctgtccctttctctagtgatgtaccgcatctcaagcaacttggagtaa 25890247 Query: 140 agggagttgtaacattgaatgagccttatgagactctggtgccaatgtccttgtaccagg 199 ||| ||||| ||| ||||||| | ||||| |||||||| |||| ||||| ||||||| Sbjct: 25890246 ggggcgttgtcacactgaatgaatcgtatgaaactctggttccaacatccttataccagg 25890187
>dbj|AK119495.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D11, full insert sequence Length = 1524 Score = 83.8 bits (42), Expect = 6e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 385 aggaacatgactcctgaagcagctttggatcatgtacgatccattaggccccgagtgctt 444 |||||||||||||||||||| ||||| ||||||| ||| || | |||||| |||| ||| Sbjct: 696 aggaacatgactcctgaagctgctttagatcatgcacggtctgtaaggcccagagtactt 755 Query: 445 ttggcaccatcacagtggcaggctgttatcgtatttagcactctca 490 || |||||||| || ||||||||||||| ||||||||| ||||| Sbjct: 756 ttagcaccatctcaatggcaggctgttaaattatttagcaatctca 801
>ref|XM_550651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 375 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 41 aggccgagttccggtggtgggac 63 ||||||||||||||||||||||| Sbjct: 269 aggccgagttccggtggtgggac 291
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 41 aggccgagttccggtggtgggac 63 ||||||||||||||||||||||| Sbjct: 2684356 aggccgagttccggtggtgggac 2684378 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 204 tgggattgatcaccttgtgattgccacaagaga 236 |||||||||||||||||| ||| | |||||||| Sbjct: 2685202 tgggattgatcaccttgttattcctacaagaga 2685234
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 tcccaagtgatgttccacgtttg 123 ||||||||||||||||||||||| Sbjct: 128761 tcccaagtgatgttccacgtttg 128739
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 tcccaagtgatgttccacgtttg 123 ||||||||||||||||||||||| Sbjct: 45080 tcccaagtgatgttccacgtttg 45058
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 41 aggccgagttccggtggtgggac 63 ||||||||||||||||||||||| Sbjct: 139697 aggccgagttccggtggtgggac 139719 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 204 tgggattgatcaccttgtgattgccacaagaga 236 |||||||||||||||||| ||| | |||||||| Sbjct: 140543 tgggattgatcaccttgttattcctacaagaga 140575
>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529C07 Length = 174011 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 41 aggccgagttccggtggtgggac 63 ||||||||||||||||||||||| Sbjct: 96103 aggccgagttccggtggtgggac 96125 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 204 tgggattgatcaccttgtgattgccacaagaga 236 |||||||||||||||||| ||| | |||||||| Sbjct: 96949 tgggattgatcaccttgttattcctacaagaga 96981
>emb|BX649406.10| Zebrafish DNA sequence from clone CH211-203N20 in linkage group 4 Contains two CpG islands, complete sequence Length = 141237 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 atcacagtggcaggctgttat 473 ||||||||||||||||||||| Sbjct: 114853 atcacagtggcaggctgttat 114833
>gb|AC123704.21| Mus musculus chromosome 15, clone RP23-351F24, complete sequence Length = 202330 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 acttggagttcagggagttgtaaca 153 |||||||||||| |||||||||||| Sbjct: 157493 acttggagttcatggagttgtaaca 157517
>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence Length = 171669 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ttttgtgctatttgatcaaa 381 |||||||||||||||||||| Sbjct: 153400 ttttgtgctatttgatcaaa 153419
>ref|XM_493799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1671 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccattaggccccgagtgctt 444 |||||||||||||||||||| Sbjct: 419 ccattaggccccgagtgctt 400
>gb|AC161210.5| Mus musculus chromosome 3, clone RP23-71N6, complete sequence Length = 158006 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ttttgtgctatttgatcaaa 381 |||||||||||||||||||| Sbjct: 79448 ttttgtgctatttgatcaaa 79429
>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence Length = 211910 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ggcaccaaagcctccatccc 560 |||||||||||||||||||| Sbjct: 10556 ggcaccaaagcctccatccc 10537
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccattaggccccgagtgctt 444 |||||||||||||||||||| Sbjct: 30511768 ccattaggccccgagtgctt 30511749
>gb|AC164179.7| Mus musculus 10 BAC RP24-63J23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209011 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gtatttagcactctcaccac 494 |||||||||||||||||||| Sbjct: 130516 gtatttagcactctcaccac 130497
>ref|XM_786612.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC586849 (LOC586849), partial mRNA Length = 741 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cacaagagactacctcttcg 247 |||||||||||||||||||| Sbjct: 454 cacaagagactacctcttcg 435
>gb|AC069020.8| Homo sapiens chromosome 10 clone RP11-165K20, complete sequence Length = 171413 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tatttgatcaaatataggaacatg 393 |||||||| ||||||||||||||| Sbjct: 156855 tatttgataaaatataggaacatg 156878
>gb|AC024600.5| Homo sapiens chromosome 10 clone RP11-179K3, complete sequence Length = 147878 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tatttgatcaaatataggaacatg 393 |||||||| ||||||||||||||| Sbjct: 29622 tatttgataaaatataggaacatg 29645
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccattaggccccgagtgctt 444 |||||||||||||||||||| Sbjct: 43341 ccattaggccccgagtgctt 43322
>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence Length = 171141 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 ggcaccaaagcctccatccc 560 |||||||||||||||||||| Sbjct: 10300 ggcaccaaagcctccatccc 10319
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccattaggccccgagtgctt 444 |||||||||||||||||||| Sbjct: 30603190 ccattaggccccgagtgctt 30603171
>dbj|AK070433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054B12, full insert sequence Length = 3664 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccattaggccccgagtgctt 444 |||||||||||||||||||| Sbjct: 562 ccattaggccccgagtgctt 543
>gb|AC131325.8| Mus musculus chromosome 17, clone RP23-431O10, complete sequence Length = 191331 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 atcaaatataggaacatgac 395 |||||||||||||||||||| Sbjct: 13603 atcaaatataggaacatgac 13584
>gb|AC154617.3| Mus musculus BAC clone RP23-319O17 from chromosome 17, complete sequence Length = 197515 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 atcaaatataggaacatgac 395 |||||||||||||||||||| Sbjct: 24555 atcaaatataggaacatgac 24574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,236,401 Number of Sequences: 3902068 Number of extensions: 4236401 Number of successful extensions: 71123 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70924 Number of HSP's gapped (non-prelim): 198 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)