ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal32m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ124210.1| Triticum aestivum glutamine synthetase isoform GS... 139 5e-30
2emb|X69087.1|HVCGSA H.vulgare mRNA for cytoplasmic glutamine syn... 129 5e-27
3gb|DQ124211.1| Triticum aestivum glutamine synthetase isoform GS... 76 6e-11
4gb|DQ124209.1| Triticum aestivum glutamine synthetase isoform GS... 76 6e-11
5gb|AC096777.1| Mus musculus clone RP23-106L19, complete sequence 46 0.058
6emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in... 46 0.058
7ref|NM_118686.2| Arabidopsis thaliana MSH3 AT4G25540 (MSH3) mRNA... 44 0.23
8gb|AC121481.6| Rattus norvegicus NOVECTOR CH230-218J9 (Children... 44 0.23
9gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome... 44 0.23
10emb|AJ007791.1|ATH7791 Arabidopsis thaliana mRNA for mismatch re... 44 0.23
11emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, ... 44 0.23
12emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 ... 44 0.23
13dbj|AK222004.1| Arabidopsis thaliana mRNA for putative DNA misma... 44 0.23
14gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, com... 44 0.23
15gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete... 42 0.90
16emb|CT010519.5| Mouse DNA sequence from clone RP23-305D10 on chr... 42 0.90
17emb|AL591126.18| Mouse DNA sequence from clone RP23-188A3 on chr... 42 0.90
18emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chro... 42 0.90
19gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete se... 42 0.90
20gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E... 42 0.90
21dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 42 0.90
22dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 0.90
23gb|AC116411.7| Mus musculus chromosome 3, clone RP24-485O3, comp... 42 0.90
24gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 ... 42 0.90
25gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome... 40 3.6
26gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, com... 40 3.6
27gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete... 40 3.6
28ref|XM_718384.1| Candida albicans SC5314 hypothetical protein (C... 40 3.6
29ref|XM_718195.1| Candida albicans SC5314 hypothetical protein (C... 40 3.6
30emb|BX255935.27| Zebrafish DNA sequence from clone DKEYP-46H4 in... 40 3.6
31emb|Z71258.1|CEC01H6 Caenorhabditis elegans Cosmid C01H6, comple... 40 3.6
32gb|AC108949.4| Mus musculus BAC clone RP23-451K2 from 6, complet... 40 3.6
33gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequ... 40 3.6
34gb|AC103419.6| Rattus norvegicus 9 BAC CH230-145A24 (Children's ... 40 3.6
35emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, c... 40 3.6
36emb|CR381704.5| Zebrafish DNA sequence from clone CH211-202F6 in... 40 3.6
37emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 i... 40 3.6
38gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom... 40 3.6
39gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswel... 40 3.6
40gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell... 40 3.6
41gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 40 3.6
42gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell... 40 3.6
43gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, c... 40 3.6
44gb|AC010594.7| Homo sapiens chromosome 5 clone CTC-478B9, comple... 40 3.6
45gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35... 40 3.6
46gb|AC018763.6| Homo sapiens chromosome 5 clone CTD-2305C23, comp... 40 3.6
47gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, r... 40 3.6
48gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, r... 40 3.6
49ref|NM_059640.2| Caenorhabditis elegans C01H6.7 (Bromodomain) mR... 40 3.6
50dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
51gb|AC034247.4|AC034247 Homo sapiens chromosome 5 clone RP11-343P... 40 3.6
52gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, r... 40 3.6
53emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in... 40 3.6
54gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, r... 40 3.6
55gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K... 40 3.6
56gb|AC026753.5|AC026753 Homo sapiens chromosome 5 clone RP11-72L1... 40 3.6
57dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
58dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
59gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence 40 3.6
60emb|AL929536.7| Zebrafish DNA sequence from clone CH211-158E23, ... 40 3.6
61emb|CR385078.23| Zebrafish DNA sequence from clone DKEYP-104F11 ... 40 3.6
62gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, r... 40 3.6
63gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22... 40 3.6
64gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55... 40 3.6
65gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23... 40 3.6
66gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59... 40 3.6
67gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 40 3.6
68gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s... 40 3.6
69gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complet... 40 3.6
70emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chrom... 40 3.6
71emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chr... 40 3.6
72gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosom... 40 3.6 
>gb|DQ124210.1| Triticum aestivum glutamine synthetase isoform GS1b (GS1) mRNA,
            complete cds
          Length = 1496

 Score =  139 bits (70), Expect = 5e-30
 Identities = 94/102 (92%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                        
Query: 158  ttgattgttttcccttgccgtctggatgctatg-----gtctcgtgtaatcatcgattga 212
            ||||||||||||||||||||||||| |||| ||     |||||||||||||||| |||||
Sbjct: 1383 ttgattgttttcccttgccgtctgggtgctctggtctcgtctcgtgtaatcatcaattga 1442

                                                      
Query: 213  tatggtaataaaatggtccgtaccgcagccgtggtaccacgc 254
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 tatggtaataaaatggtccgtaccgcagccgtggtaccacgc 1484



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                      
Query: 8    tttccttttacgtttggttgcatactactcctagtccgcttaggtaggtcacatcatc 65
            ||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 1239 tttccttttccgtttggttgcatactacgcgtagtccgtttaggtaggtcacatcatc 1296



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 104  tgggtgatgggtggcaaggggcgtgtcaaa 133
            |||||| ||||||||||| |||||||||||
Sbjct: 1338 tgggtggtgggtggcaagaggcgtgtcaaa 1367
to top
>emb|X69087.1|HVCGSA H.vulgare mRNA for cytoplasmic glutamine synthetase
          Length = 1456

 Score =  129 bits (65), Expect = 5e-27
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                        
Query: 2    cagcattttccttttacgtttggttgcatactactcctagtccgcttaggtaggtcacat 61
            ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct: 1214 cagcattttccttttacgtgtggntgnatactactcctagtccgcttaggtaggtcacat 1273

                           
Query: 62   catcatggtcatctc 76
            |||||||||||||||
Sbjct: 1274 catcatggtcatctc 1288



 Score =  113 bits (57), Expect = 3e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                        
Query: 73   tctcttctcgttctcgtctttgggtgggtggtgggtgatgggtggcaaggggcgtgtcaa 132
            |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 tctcttctcgctctcgtctntgggtgggtggtgggtgatgggtggcaaggggcgtgtcaa 1364

                
Query: 133  agca 136
            ||||
Sbjct: 1365 agca 1368



 Score =  105 bits (53), Expect = 7e-20
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                        
Query: 136  acaagattactacagtatttggttgattgttttcccttgccgtctggatgctatggtctc 195
            |||||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||
Sbjct: 1387 acaagattactacagtatntgggtgattgttaacccttgccgtctggatgctatggtctc 1446

                    
Query: 196  gtgtaatc 203
            ||||||||
Sbjct: 1447 gtgtaatc 1454
to top
>gb|DQ124211.1| Triticum aestivum glutamine synthetase isoform GS1c (GS1) mRNA,
            complete cds
          Length = 1223

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                      
Query: 8    tttccttttacgtttggttgcatactactcctagtccgcttaggtaggtcacatcatc 65
            ||||| ||| |||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 1164 tttccgtttccgtttggttgcatactacgcgtagtccgtttaggtaggtcacatcatc 1221
to top
>gb|DQ124209.1| Triticum aestivum glutamine synthetase isoform GS1a (GS1) mRNA,
            complete cds
          Length = 1292

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 12   cttttacgtttggttgcatactactcctagtccgcttaggtaggtcacatcatc 65
            ||||| |||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct: 1237 cttttccgtttggttgcatactacgcgtagtccgcttaggtaggtcgcatcatc 1290
to top
>gb|AC096777.1| Mus musculus clone RP23-106L19, complete sequence
          Length = 209671

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 95    ggtgggtggtgggtgatgggtgg 117
             |||||||||||||||||||||||
Sbjct: 96122 ggtgggtggtgggtgatgggtgg 96144
to top
>emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in linkage group 5, complete
              sequence
          Length = 171425

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 59     catcatcatggtcatctcttctc 81
              |||||||||||||||||||||||
Sbjct: 151434 catcatcatggtcatctcttctc 151412
to top
>ref|NM_118686.2| Arabidopsis thaliana MSH3 AT4G25540 (MSH3) mRNA, complete cds
          Length = 3487

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 48   taggtaggtcacatcatcatggtcat 73
            ||||||||||||||||||||| ||||
Sbjct: 3011 taggtaggtcacatcatcatgatcat 2986
to top
>gb|AC121481.6| Rattus norvegicus  NOVECTOR CH230-218J9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 236244

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 95    ggtgggtggtgggtgatgggtg 116
             ||||||||||||||||||||||
Sbjct: 35927 ggtgggtggtgggtgatgggtg 35906
to top
>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 92     ttgggtgggtggtgggtgatgggtgg 117
              |||||||||||||||||| |||||||
Sbjct: 162232 ttgggtgggtggtgggtggtgggtgg 162207
to top
>emb|AJ007791.1|ATH7791 Arabidopsis thaliana mRNA for mismatch repair protein (Msh3)
          Length = 3521

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 48   taggtaggtcacatcatcatggtcat 73
            ||||||||||||||||||||| ||||
Sbjct: 3011 taggtaggtcacatcatcatgatcat 2986
to top
>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63
          Length = 198777

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 48     taggtaggtcacatcatcatggtcat 73
              ||||||||||||||||||||| ||||
Sbjct: 125435 taggtaggtcacatcatcatgatcat 125460
to top
>emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project)
          Length = 80386

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 48    taggtaggtcacatcatcatggtcat 73
             ||||||||||||||||||||| ||||
Sbjct: 29383 taggtaggtcacatcatcatgatcat 29358
to top
>dbj|AK222004.1| Arabidopsis thaliana mRNA for putative DNA mismatch repair protein,
           partial cds, clone: RAFL22-65-J17
          Length = 1307

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 48  taggtaggtcacatcatcatggtcat 73
           ||||||||||||||||||||| ||||
Sbjct: 828 taggtaggtcacatcatcatgatcat 803
to top
>gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, complete sequence
          Length = 200341

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 92    ttgggtgggtggtgggtgatgggtgg 117
             |||||||||||||||||| |||||||
Sbjct: 26720 ttgggtgggtggtgggtggtgggtgg 26695
to top
>gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete sequence
          Length = 161653

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    ggtgggtggtgggtgatgggt 115
             |||||||||||||||||||||
Sbjct: 82853 ggtgggtggtgggtgatgggt 82833
to top
>emb|CT010519.5| Mouse DNA sequence from clone RP23-305D10 on chromosome 14, complete
              sequence
          Length = 224463

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 93     tgggtgggtggtgggtgatgggtgg 117
              ||||||||||||||||| |||||||
Sbjct: 128569 tgggtgggtggtgggtggtgggtgg 128545
to top
>emb|AL591126.18| Mouse DNA sequence from clone RP23-188A3 on chromosome 11 Contains a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the 5' end of the Nf1 gene for neurofibromatosis 1 and a
              ribosomal protein L17 (Rpl17) pseudogene, complete sequence
          Length = 190048

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 93     tgggtgggtggtgggtgatgggtgg 117
              ||||||| |||||||||||||||||
Sbjct: 169181 tgggtggatggtgggtgatgggtgg 169205



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 93     tgggtgggtggtgggtgatgggtgg 117
              ||||||| |||||||||||||||||
Sbjct: 169122 tgggtggatggtgggtgatgggtgg 169146



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 93     tgggtgggtggtgggtgatgggtgg 117
              ||||||| |||||||||||||||||
Sbjct: 169056 tgggtggatggtgggtgatgggtgg 169080
to top
>emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chromosome 11 Contains the 5'
              end of the Tcn2 gene for transcobalamin 2, two novel genes,
              a glyceraldehyde-3-phosphate dehydrogenase (Gapd)
              pseudogene, the Pes1 gene for BRCT domain containing
              pescadillo homolog 1 (zebrafish), the Gcst gene for
              galactosylceramide sulfotransferase, a
              ubiquitin-conjugating enzyme E2L 3 (Ube2l3) pseuogene, the
              Sec14l4 and Sec14l2 genes for SEC14-like 4 (S. cerevisiae)
              and 2, the ortholog of human and rat SEC14-like 3 (S.
              cerevisiae) SEC14L3, a ribosomal protein L29 (Rpl29)
              pseudogene, a transformer 2 alpha homolog (Drosophila)
              (Tra2a) pseudogene and a CpG island, complete sequence
          Length = 201238

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 93     tgggtgggtggtgggtgatgggtgg 117
              ||||||| |||||||||||||||||
Sbjct: 139761 tgggtggatggtgggtgatgggtgg 139785
to top
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence
          Length = 134908

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    tcatcatggtcatctcttctc 81
             |||||||||||||||||||||
Sbjct: 30117 tcatcatggtcatctcttctc 30097
to top
>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
              BACR02C24, complete sequence
          Length = 234783

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     ggtgggtggtgggtgatgggt 115
              |||||||||||||||||||||
Sbjct: 152186 ggtgggtggtgggtgatgggt 152206
to top
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    gattgatatggtaataaaatg 227
              |||||||||||||||||||||
Sbjct: 345722 gattgatatggtaataaaatg 345742
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 153     tttggttgattgttttccctt 173
               |||||||||||||||||||||
Sbjct: 3994573 tttggttgattgttttccctt 3994553
to top
>gb|AC116411.7| Mus musculus chromosome 3, clone RP24-485O3, complete sequence
          Length = 143601

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    gggtgggtggtgggtgatggg 114
             |||||||||||||||||||||
Sbjct: 82507 gggtgggtggtgggtgatggg 82487
to top
>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete
              sequence
          Length = 310498

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     ggtgggtggtgggtgatgggt 115
              |||||||||||||||||||||
Sbjct: 181518 ggtgggtggtgggtgatgggt 181498
to top
>gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome 12, complete sequence
          Length = 172492

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     gggtgggtggtgggtgatgggtgg 117
              |||||||||||||||| |||||||
Sbjct: 105296 gggtgggtggtgggtggtgggtgg 105273
to top
>gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, complete sequence
          Length = 165926

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     gggtgggtggtgggtgatgg 113
              ||||||||||||||||||||
Sbjct: 105989 gggtgggtggtgggtgatgg 105970
to top
>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 171788 ggtgggtggtgggtggtgggtggc 171765
to top
>ref|XM_718384.1| Candida albicans SC5314 hypothetical protein (CaO19_4791), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  gtatttggttgattgttttc 169
            ||||||||||||||||||||
Sbjct: 1193 gtatttggttgattgttttc 1212
to top
>ref|XM_718195.1| Candida albicans SC5314 hypothetical protein (CaO19_12255), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  gtatttggttgattgttttc 169
            ||||||||||||||||||||
Sbjct: 1193 gtatttggttgattgttttc 1212
to top
>emb|BX255935.27| Zebrafish DNA sequence from clone DKEYP-46H4 in linkage group 14,
            complete sequence
          Length = 163552

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 146  tacagtatttggttgattgttttc 169
            |||||||||| |||||||||||||
Sbjct: 5855 tacagtatttcgttgattgttttc 5832
to top
>emb|Z71258.1|CEC01H6 Caenorhabditis elegans Cosmid C01H6, complete sequence
          Length = 40359

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   tacagtatttggttgattgt 165
             ||||||||||||||||||||
Sbjct: 34269 tacagtatttggttgattgt 34250
to top
>gb|AC108949.4| Mus musculus BAC clone RP23-451K2 from 6, complete sequence
          Length = 181571

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggtgggtggtgggtgatggg 114
              ||||||||||||||||||||
Sbjct: 151479 ggtgggtggtgggtgatggg 151460
to top
>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     gggtgggtggtgggtgatgggtgg 117
              |||||||||||||||| |||||||
Sbjct: 123006 gggtgggtggtgggtggtgggtgg 122983
to top
>gb|AC103419.6| Rattus norvegicus 9 BAC CH230-145A24 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217001

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    gggtgggtggtgggtgatgggtgg 117
             |||||||||||||||| |||||||
Sbjct: 85734 gggtgggtggtgggtggtgggtgg 85757
to top
>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence
          Length = 177056

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   tacagtatttggttgattgttttc 169
             |||||||||| |||||||||||||
Sbjct: 15867 tacagtatttcgttgattgttttc 15890
to top
>emb|CR381704.5| Zebrafish DNA sequence from clone CH211-202F6 in linkage group 14,
              complete sequence
          Length = 130789

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     aggtaggtcacatcatcatg 68
              ||||||||||||||||||||
Sbjct: 105497 aggtaggtcacatcatcatg 105516
to top
>emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 in linkage group 14,
             complete sequence
          Length = 156128

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aggtaggtcacatcatcatg 68
             ||||||||||||||||||||
Sbjct: 73552 aggtaggtcacatcatcatg 73533
to top
>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     gggtgggtggtgggtgatgggtgg 117
              |||||||||||||||| |||||||
Sbjct: 180397 gggtgggtggtgggtggtgggtgg 180420
to top
>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192399

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 100709 ggtgggtggtgggtgttgggtggc 100732
to top
>gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 201313

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 159562 ggtgggtggtgggtggtgggtggc 159539
to top
>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    ggtgggtggtgggtgatgggtggc 118
             ||||||||||||||| ||||||||
Sbjct: 18218 ggtgggtggtgggtgttgggtggc 18241
to top
>gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181437

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 170167 ggtgggtggtgggtggtgggtggc 170190
to top
>gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, complete sequence
          Length = 177308

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      cattttccttttacgtttggttgc 28
              |||| |||||||||||||||||||
Sbjct: 141168 cattgtccttttacgtttggttgc 141191
to top
>gb|AC010594.7| Homo sapiens chromosome 5 clone CTC-478B9, complete sequence
          Length = 78389

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tatttggttgattgttttcc 170
             ||||||||||||||||||||
Sbjct: 41890 tatttggttgattgttttcc 41909
to top
>gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
              BACR06I01, complete sequence
          Length = 175167

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 153323 ggtgggtggtgggtggtgggtggc 153346
to top
>gb|AC018763.6| Homo sapiens chromosome 5 clone CTD-2305C23, complete sequence
          Length = 119974

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      agcattttccttttacgttt 22
              ||||||||||||||||||||
Sbjct: 112555 agcattttccttttacgttt 112536
to top
>gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
           BACR36B06, complete sequence
          Length = 183436

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 95  ggtgggtggtgggtgatgggtggc 118
           ||||||||||||||| ||||||||
Sbjct: 389 ggtgggtggtgggtggtgggtggc 412
to top
>gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, region 47D-47D, BAC clone
             BACR24G16, complete sequence
          Length = 165974

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    ggtgggtggtgggtgatgggtggc 118
             ||||||||||||||| ||||||||
Sbjct: 14689 ggtgggtggtgggtggtgggtggc 14666
to top
>ref|NM_059640.2| Caenorhabditis elegans C01H6.7 (Bromodomain) mRNA, complete cds
          Length = 2177

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 tacagtatttggttgattgt 165
           ||||||||||||||||||||
Sbjct: 752 tacagtatttggttgattgt 733
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       ggtgggtggtgggtgatggg 114
                ||||||||||||||||||||
Sbjct: 38034719 ggtgggtggtgggtgatggg 38034700
to top
>gb|AC034247.4|AC034247 Homo sapiens chromosome 5 clone RP11-343P16, complete sequence
          Length = 171482

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      agcattttccttttacgttt 22
              ||||||||||||||||||||
Sbjct: 171431 agcattttccttttacgttt 171450
to top
>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone
              BACR13J10, complete sequence
          Length = 140940

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 131307 ggtgggtggtgggtggtgggtggc 131284
to top
>emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in linkage group 14,
              complete sequence
          Length = 201070

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aggtaggtcacatcatcatg 68
              ||||||||||||||||||||
Sbjct: 137200 aggtaggtcacatcatcatg 137181
to top
>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone
              BACR23O04, complete sequence
          Length = 160817

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 137765 ggtgggtggtgggtggtgggtggc 137788
to top
>gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K6, complete sequence
          Length = 121178

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   tatttggttgattgttttcc 170
             ||||||||||||||||||||
Sbjct: 44765 tatttggttgattgttttcc 44746
to top
>gb|AC026753.5|AC026753 Homo sapiens chromosome 5 clone RP11-72L14, complete sequence
          Length = 148491

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      agcattttccttttacgttt 22
              ||||||||||||||||||||
Sbjct: 141600 agcattttccttttacgttt 141619
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggtgggtggtgggtgatggg 114
              ||||||||||||||||||||
Sbjct: 115663 ggtgggtggtgggtgatggg 115644
to top
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0471B04
          Length = 138025

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ggtgggtggtgggtgatggg 114
            ||||||||||||||||||||
Sbjct: 2753 ggtgggtggtgggtgatggg 2734
to top
>gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence
          Length = 166987

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    tgggtgggtggtgggtgatgggtg 116
             ||||||||||||||||| ||||||
Sbjct: 85175 tgggtgggtggtgggtggtgggtg 85198
to top
>emb|AL929536.7| Zebrafish DNA sequence from clone CH211-158E23, complete sequence
          Length = 151341

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   actacagtatttggttgattgttt 167
             ||||||||||||||||| ||||||
Sbjct: 48128 actacagtatttggttgtttgttt 48151
to top
>emb|CR385078.23| Zebrafish DNA sequence from clone DKEYP-104F11 in linkage group 20,
            complete sequence
          Length = 182152

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 146  tacagtatttggttgattgttttc 169
            |||||||||| |||||||||||||
Sbjct: 4959 tacagtatttcgttgattgttttc 4936
to top
>gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone
              BACR48E21, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 152659 ggtgggtggtgggtggtgggtggc 152682
to top
>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the complete
              sequence
          Length = 214323

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 157488 ggtgggtggtgggtggtgggtggc 157511
to top
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete
              sequence
          Length = 265413

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 198376 ggtgggtggtgggtggtgggtggc 198399
to top
>gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23 of 73 of the complete
             sequence
          Length = 256227

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    ggtgggtggtgggtgatgggtggc 118
             ||||||||||||||| ||||||||
Sbjct: 34410 ggtgggtggtgggtggtgggtggc 34387
to top
>gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59 of 83 of the complete
              sequence
          Length = 281100

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     ggtgggtggtgggtgatgggtggc 118
              ||||||||||||||| ||||||||
Sbjct: 163435 ggtgggtggtgggtggtgggtggc 163412
to top
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
             sequence
          Length = 318699

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    ggtgggtggtgggtgatgggtggc 118
             ||||||||||||||| ||||||||
Sbjct: 32865 ggtgggtggtgggtgttgggtggc 32888
to top
>gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s DS04504 (D346) and DS00068
             (D348)), complete sequence
          Length = 83099

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    ggtgggtggtgggtgatgggtggc 118
             ||||||||||||||| ||||||||
Sbjct: 35517 ggtgggtggtgggtggtgggtggc 35494
to top
>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence
          Length = 231000

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     gggtgggtggtgggtgatgggtgg 117
              |||||||||||||||| |||||||
Sbjct: 202715 gggtgggtggtgggtggtgggtgg 202692
to top
>emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chromosome 2, complete
              sequence
          Length = 195971

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     gggtgggtggtgggtgatgggtgg 117
              |||||||||||||||| |||||||
Sbjct: 174855 gggtgggtggtgggtggtgggtgg 174878
to top
>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete
              sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ggtgggtggtgggtgatggg 114
              ||||||||||||||||||||
Sbjct: 153633 ggtgggtggtgggtgatggg 153652
to top
>gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosome 12, complete
             sequence
          Length = 183684

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    gggtgggtggtgggtgatgggtgg 117
             |||||||||||||||| |||||||
Sbjct: 77054 gggtgggtggtgggtggtgggtgg 77077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,132,094
Number of Sequences: 3902068
Number of extensions: 2132094
Number of successful extensions: 42208
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42017
Number of HSP's gapped (non-prelim): 170
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top