| Clone Name | baal33b18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 648 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 707 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 708 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 767 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 768 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 827 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 828 cggtcccccttcggcagcctcatcgtcgagttctagg 864 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 471 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 530 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcggccaccgg 124 ||||| ||||||||||||||||||||||| || ||||| || |||||||| || |||| Sbjct: 531 gactccttccgcttctgctccctcggatgcaagattgtgggtacgtccggtggataccgc 590 Query: 125 ccgaggaagaa 135 || |||||||| Sbjct: 591 ccaaggaagaa 601
>ref|XM_506899.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.19 mRNA Length = 1322 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 653 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 712 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 713 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 772 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 773 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 832 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 833 cggtcccccttcggcagcctcatcgtcgagttctagg 869 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 476 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 535 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcggccaccgg 124 ||||| ||||||||||||||||||||||| || ||||| || |||||||| || |||| Sbjct: 536 gactccttccgcttctgctccctcggatgcaagattgtgggtacgtccggtggataccgc 595 Query: 125 ccgaggaagaa 135 || |||||||| Sbjct: 596 ccaaggaagaa 606
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 28454241 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 28454182 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 28454181 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 28454122 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 28454121 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 28454062 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 28454061 cggtcccccttcggcagcctcatcgtcgagttctagg 28454025 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 28454508 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 28454449 Query: 65 gactcgttccgcttctgctccctcggatg 93 ||||| ||||||||||||||||||||||| Sbjct: 28454448 gactccttccgcttctgctccctcggatg 28454420 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 gacgacgaccaagttttgca 618 |||||||||||||||||||| Sbjct: 34813694 gacgacgaccaagttttgca 34813675 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ttccgcttctgctccctcgg 90 |||||||||||||||||||| Sbjct: 5204129 ttccgcttctgctccctcgg 5204110
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 78362 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 78303 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 78302 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 78243 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 78242 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 78183 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 78182 cggtcccccttcggcagcctcatcgtcgagttctagg 78146 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 78629 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 78570 Query: 65 gactcgttccgcttctgctccctcggatg 93 ||||| ||||||||||||||||||||||| Sbjct: 78569 gactccttccgcttctgctccctcggatg 78541
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 23082 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 23023 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 23022 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 22963 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 22962 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 22903 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 22902 cggtcccccttcggcagcctcatcgtcgagttctagg 22866 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 23349 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 23290 Query: 65 gactcgttccgcttctgctccctcggatg 93 ||||| ||||||||||||||||||||||| Sbjct: 23289 gactccttccgcttctgctccctcggatg 23261
>dbj|AK104818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A01, full insert sequence Length = 1305 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 648 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 707 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 708 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 767 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 768 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 827 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 828 cggtcccccttcggcagcctcatcgtcgagttctagg 864 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 471 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 530 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcggccaccgg 124 ||||| ||||||||||||||||||||||| || ||||| || |||||||| || |||| Sbjct: 531 gactccttccgcttctgctccctcggatgcaagattgtgggtacgtccggtggataccgc 590 Query: 125 ccgaggaagaa 135 || |||||||| Sbjct: 591 ccaaggaagaa 601
>dbj|AK066953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A21, full insert sequence Length = 1321 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 652 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 711 Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtggtgcagagcttctcgccgtcgacc 280 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct: 712 agcaccagcggcggcagcagcgacaagagcagcgtcgtgcagagcttcacgccgttgacc 771 Query: 281 ccgccggccacctccagcagctaccgcgccggaaacaagcgccgcaagggcatcccgcac 340 |||||| | |||||| |||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 772 ccgccgccgacctccgccagctaccgcaccggcaacaagcgccgcaagggcgtcccgcac 831 Query: 341 cggtcgccgttcggcagcctcatcgtggagctctagg 377 ||||| || ||||||||||||||||| ||| |||||| Sbjct: 832 cggtcccccttcggcagcctcatcgtcgagttctagg 868 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 475 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctcctc 534 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcggccaccgg 124 ||||| ||||||||||||||||||||||| || ||||| || |||||||| || |||| Sbjct: 535 gactccttccgcttctgctccctcggatgcaagattgtgggtacgtccggtggataccgc 594 Query: 125 ccgaggaagaa 135 || |||||||| Sbjct: 595 ccaaggaagaa 605
>ref|XM_473723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 196 gtcggactcggagcactcgtgcacgagcacaagcggcggcagcagcgacaagagcagcgt 255 |||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||| Sbjct: 546 gtcggactcggacgactcctccacgaccacaagcggcgggagc---gacaagagcagcgt 602 Query: 256 ggtgcagagcttctcgccgtcgaccccgccggccacctccagcagctaccgcgccggaaa 315 ||||||||||||| | ||||| || || ||||| ||| ||| |||||||||| |||| Sbjct: 603 ggtgcagagcttcaccccgtccacgcctccggcgaccgccaacagctaccgcaccgg--- 659 Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgtggagctcta 375 |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 660 caagcgtcgcaagggcgtcccgcaccggtcgccgttcggcagcctcatggtggagttcta 719 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct: 355 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctgctc 414 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcg 116 ||| | |||||||||||||||||||| || || || || ||||| ||||||| Sbjct: 415 gacaccttccgcttctgctccctcggctgcaagatcgtcggcacctccggcg 466
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 196 gtcggactcggagcactcgtgcacgagcacaagcggcggcagcagcgacaagagcagcgt 255 |||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||| Sbjct: 5427 gtcggactcggacgactcctccacgaccacaagcggcgggagc---gacaagagcagcgt 5371 Query: 256 ggtgcagagcttctcgccgtcgaccccgccggccacctccagcagctaccgcgccggaaa 315 ||||||||||||| | ||||| || || ||||| ||| ||| |||||||||| |||| Sbjct: 5370 ggtgcagagcttcaccccgtccacgcctccggcgaccgccaacagctaccgcaccgg--- 5314 Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgtggagctcta 375 |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 5313 caagcgtcgcaagggcgtcccgcaccggtcgccgttcggcagcctcatggtggagttcta 5254 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct: 5706 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctgctc 5647 Query: 65 gactcgttccgcttctgctccctcgg 90 ||| | |||||||||||||||||||| Sbjct: 5646 gacaccttccgcttctgctccctcgg 5621
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 196 gtcggactcggagcactcgtgcacgagcacaagcggcggcagcagcgacaagagcagcgt 255 |||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||| Sbjct: 29868675 gtcggactcggacgactcctccacgaccacaagcggcgggagc---gacaagagcagcgt 29868619 Query: 256 ggtgcagagcttctcgccgtcgaccccgccggccacctccagcagctaccgcgccggaaa 315 ||||||||||||| | ||||| || || ||||| ||| ||| |||||||||| |||| Sbjct: 29868618 ggtgcagagcttcaccccgtccacgcctccggcgaccgccaacagctaccgcaccgg--- 29868562 Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgtggagctcta 375 |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 29868561 caagcgtcgcaagggcgtcccgcaccggtcgccgttcggcagcctcatggtggagttcta 29868502 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct: 29868954 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctgctc 29868895 Query: 65 gactcgttccgcttctgctccctcgg 90 ||| | |||||||||||||||||||| Sbjct: 29868894 gacaccttccgcttctgctccctcgg 29868869 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 270 cgccgtcgaccccgccggccacc 292 ||||||||||||||||||||||| Sbjct: 8086552 cgccgtcgaccccgccggccacc 8086574
>dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full insert sequence Length = 1474 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 196 gtcggactcggagcactcgtgcacgagcacaagcggcggcagcagcgacaagagcagcgt 255 |||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||| Sbjct: 810 gtcggactcggacgactcctccacgaccacaagcggcgggagc---gacaagagcagcgt 866 Query: 256 ggtgcagagcttctcgccgtcgaccccgccggccacctccagcagctaccgcgccggaaa 315 ||||||||||||| | ||||| || || ||||| ||| ||| |||||||||| |||| Sbjct: 867 ggtgcagagcttcaccccgtccacgcctccggcgaccgccaacagctaccgcaccgg--- 923 Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgtggagctcta 375 |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 924 caagcgtcgcaagggcgtcccgcaccggtcgccgttcggcagcctcatggtggagttcta 983 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct: 619 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctgctc 678 Query: 65 gactcgttccgcttctgctccctcggatgtaaaattgtaggcacgtccggcg 116 ||| | |||||||||||||||||||| || || || || ||||| ||||||| Sbjct: 679 gacaccttccgcttctgctccctcggctgcaagatcgtcggcacctccggcg 730
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 196 gtcggactcggagcactcgtgcacgagcacaagcggcggcagcagcgacaagagcagcgt 255 |||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||| Sbjct: 149601 gtcggactcggacgactcctccacgaccacaagcggcgggagc---gacaagagcagcgt 149545 Query: 256 ggtgcagagcttctcgccgtcgaccccgccggccacctccagcagctaccgcgccggaaa 315 ||||||||||||| | ||||| || || ||||| ||| ||| |||||||||| |||| Sbjct: 149544 ggtgcagagcttcaccccgtccacgcctccggcgaccgccaacagctaccgcaccgg--- 149488 Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgtggagctcta 375 |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 149487 caagcgtcgcaagggcgtcccgcaccggtcgccgttcggcagcctcatggtggagttcta 149428 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct: 149880 cagccgaggcccggcaagggcgtcaccaacacctgcgaggtctgcgagcgcagcctgctc 149821 Query: 65 gactcgttccgcttctgctccctcgg 90 ||| | |||||||||||||||||||| Sbjct: 149820 gacaccttccgcttctgctccctcgg 149795
>gb|AY022797.1| Oryza sativa microsatellite MRG5122 containing (CGC)X8, closest to marker R3393, genomic sequence Length = 224 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 161 aagaagaagaagagagcggcgctcaaggacgcgcggtcggactcggagcactcgtgcacg 220 |||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||| Sbjct: 89 aagaagaagaagagggcggcgctcaaggacgcgcggtacgagtccgaggactcgtgcacg 30 Query: 221 agcacaagcggcggcagcagcgacaagag 249 ||||| ||||||||||||||||||||||| Sbjct: 29 agcaccagcggcggcagcagcgacaagag 1
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 2 ccgcagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctc 61 |||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 24775763 ccgcaggcgaggcccgggaagggcgtcaccaacacctgcgagatctgctgccgcagcctc 24775822 Query: 62 ctcgactcgttccgcttctgctccctcgg 90 | |||||| |||||||||||||||||||| Sbjct: 24775823 cccgactccttccgcttctgctccctcgg 24775851 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gcagcctcatcgtggagctc 373 |||||||||||||||||||| Sbjct: 27283181 gcagcctcatcgtggagctc 27283200
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 2 ccgcagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctc 61 |||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 109444 ccgcaggcgaggcccgggaagggcgtcaccaacacctgcgagatctgctgccgcagcctc 109503 Query: 62 ctcgactcgttccgcttctgctccctcgg 90 | |||||| |||||||||||||||||||| Sbjct: 109504 cccgactccttccgcttctgctccctcgg 109532
>dbj|AK067251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099A07, full insert sequence Length = 1274 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 2 ccgcagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctc 61 |||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 485 ccgcaggcgaggcccgggaagggcgtcaccaacacctgcgagatctgctgccgcagcctc 544 Query: 62 ctcgactcgttccgcttctgctccctcgg 90 | |||||| |||||||||||||||||||| Sbjct: 545 cccgactccttccgcttctgctccctcgg 573
>dbj|AK065620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030D23, full insert sequence Length = 1762 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 2 ccgcagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctc 61 |||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 585 ccgcaggcgaggcccgggaagggcgtcaccaacacctgcgagatctgctgccgcagcctc 644 Query: 62 ctcgactcgttccgcttctgctccctcgg 90 | |||||| |||||||||||||||||||| Sbjct: 645 cccgactccttccgcttctgctccctcgg 673
>dbj|AK061790.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F02, full insert sequence Length = 1264 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 2 ccgcagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctc 61 |||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 488 ccgcaggcgaggcccgggaagggcgtcaccaacacctgcgagatctgctgccgcagcctc 547 Query: 62 ctcgactcgttccgcttctgctccctcgg 90 | |||||| |||||||||||||||||||| Sbjct: 548 cccgactccttccgcttctgctccctcgg 576
>gb|AY107136.1| Zea mays PCO101290 mRNA sequence Length = 678 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 317 aagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgt 366 |||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 265 aagcgccgcaagggcatcccgcaccgcgccccgttcggcagcctcatcgt 314 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 37 ctgcgacgtctgcgagcgcagcctcctcgactcgttccgcttctgctccctcgg 90 |||||| ||||||| ||||||||||||||| |||||||||||||||||||| Sbjct: 51 ctgcgaggtctgcgcccgcagcctcctcgacaacttccgcttctgctccctcgg 104
>ref|NM_197866.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0003O19.3), mRNA Length = 1190 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgt 366 |||||||||||||||||| || ||||| |||| ||||||||||||||||| Sbjct: 705 caagcgccgcaagggcattccacaccgcgcgccattcggcagcctcatcgt 755 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 30 ccaacacctgcgacgtctgcgagcgcagcctcctcgactcgttccgcttctgctccctcg 89 |||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 455 ccaacatctgcgaggtctgcagccgcagcctcctcgacaacttccgcttctgctccctcg 514 Query: 90 g 90 | Sbjct: 515 g 515
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgt 366 |||||||||||||||||| || ||||| |||| ||||||||||||||||| Sbjct: 22309960 caagcgccgcaagggcattccacaccgcgcgccattcggcagcctcatcgt 22309910 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 30 ccaacacctgcgacgtctgcgagcgcagcctcctcgactcgttccgcttctgctccctcg 89 |||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 22310210 ccaacatctgcgaggtctgcagccgcagcctcctcgacaacttccgcttctgctccctcg 22310151 Query: 90 g 90 | Sbjct: 22310150 g 22310150 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tctcgccgtcgaccccgccg 286 |||||||||||||||||||| Sbjct: 20957711 tctcgccgtcgaccccgccg 20957730
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgt 366 |||||||||||||||||| || ||||| |||| ||||||||||||||||| Sbjct: 127203 caagcgccgcaagggcattccacaccgcgcgccattcggcagcctcatcgt 127153 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 30 ccaacacctgcgacgtctgcgagcgcagcctcctcgactcgttccgcttctgctccctcg 89 |||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 127453 ccaacatctgcgaggtctgcagccgcagcctcctcgacaacttccgcttctgctccctcg 127394 Query: 90 g 90 | Sbjct: 127393 g 127393
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 316 caagcgccgcaagggcatcccgcaccggtcgccgttcggcagcctcatcgt 366 |||||||||||||||||| || ||||| |||| ||||||||||||||||| Sbjct: 22322028 caagcgccgcaagggcattccacaccgcgcgccattcggcagcctcatcgt 22321978 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 30 ccaacacctgcgacgtctgcgagcgcagcctcctcgactcgttccgcttctgctccctcg 89 |||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 22322278 ccaacatctgcgaggtctgcagccgcagcctcctcgacaacttccgcttctgctccctcg 22322219 Query: 90 g 90 | Sbjct: 22322218 g 22322218 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tctcgccgtcgaccccgccg 286 |||||||||||||||||||| Sbjct: 20968975 tctcgccgtcgaccccgccg 20968994
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 28053382 cctcctcgaccccttccgcttctgctccctcgg 28053350
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 8931785 cctcctcgacccattccgcttctgctccctcgg 8931817
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 130874 cctcctcgaccccttccgcttctgctccctcgg 130842
>dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1057_E05 Length = 103229 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 57942 cctcctcgacccattccgcttctgctccctcgg 57974
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 50877 cctcctcgaccccttccgcttctgctccctcgg 50845
>dbj|AK060208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B01, full insert sequence Length = 1538 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 58 cctcctcgactcgttccgcttctgctccctcgg 90 |||||||||| | |||||||||||||||||||| Sbjct: 513 cctcctcgaccccttccgcttctgctccctcgg 545
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 270 cgccgtcgaccccgccggccacc 292 ||||||||||||||||||||||| Sbjct: 148676 cgccgtcgaccccgccggccacc 148698
>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24, complete sequence Length = 124420 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 270 cgccgtcgaccccgccggccacc 292 ||||||||||||||||||||||| Sbjct: 20084 cgccgtcgaccccgccggccacc 20106
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 58 cctcctcgactcgttccgcttctgctccct 87 |||||||||| | ||||||||||||||||| Sbjct: 42879 cctcctcgacccattccgcttctgctccct 42850
>gb|AC148237.7| Medicago truncatula clone mth2-1o14, complete sequence Length = 116678 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Minus Query: 5 cagccgaggccgggcaagggagtcaccaacacctgcgacgtctgcgagcgcagcctcctc 64 ||||| ||||| || || || ||||||||||| || || ||||||||||| ||||| ||| Sbjct: 72299 cagccaaggcccggaaaaggtgtcaccaacacttgtgaagtctgcgagcgtagccttctc 72240 Query: 65 ga 66 || Sbjct: 72239 ga 72238
>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8 Length = 347625 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 aacaagcgccgcaagggcatcc 335 |||||||||||||||||||||| Sbjct: 289180 aacaagcgccgcaagggcatcc 289159
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 aacaagcgccgcaagggcatcc 335 |||||||||||||||||||||| Sbjct: 100666 aacaagcgccgcaagggcatcc 100687
>gb|DQ353853.1| Triticum aestivum AP2 domain transcription factor TaDREB3 mRNA, complete cds Length = 1004 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 gcttctcgccgtcgaccccgcc 285 |||||||||||||||||||||| Sbjct: 408 gcttctcgccgtcgaccccgcc 429
>gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (aroAA2) gene, complete cds Length = 1515 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 458 agctgcgcgccctgaacggcga 479 |||||||||||||||||||||| Sbjct: 584 agctgcgcgccctgaacggcga 605
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 58 cctcctcgactcgttccgcttctgctccct 87 |||||||||| | ||||||||||||||||| Sbjct: 13141201 cctcctcgacccattccgcttctgctccct 13141230
>gb|AY439015.3| Mycobacterium smegmatis isolate mc2 155 insertion sequence IS1096 TnpA (tnpA) and TnpR genes, complete cds; and GPL gene cluster, complete sequence Length = 67229 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 cgtcgaccccgccggccacctc 294 |||||||||||||||||||||| Sbjct: 61023 cgtcgaccccgccggccacctc 61002
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 58 cctcctcgactcgttccgcttctgctccct 87 |||||||||| | ||||||||||||||||| Sbjct: 13221380 cctcctcgacccattccgcttctgctccct 13221409
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ccccgccggccacctccagca 299 ||||||||||||||||||||| Sbjct: 2247176 ccccgccggccacctccagca 2247196 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ggcggccaccggccgaggaa 132 |||||||||||||||||||| Sbjct: 2351628 ggcggccaccggccgaggaa 2351609
>dbj|AB193035.1| Corynebacterium glutamicum DNA, strain specific island 8, strain: R Length = 45095 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 cgaccccgccggccacctcca 296 ||||||||||||||||||||| Sbjct: 4622 cgaccccgccggccacctcca 4602
>ref|XM_464434.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ttccgcttctgctccctcgg 90 |||||||||||||||||||| Sbjct: 487 ttccgcttctgctccctcgg 506
>ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative outer envelope protein (OSJNBa0082M15.3), mRNA Length = 3275 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tctcgccgtcgaccccgccg 286 |||||||||||||||||||| Sbjct: 28 tctcgccgtcgaccccgccg 9
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 416 tcgccgtcgaccccgccggc 435
>ref|XM_470526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 987 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 tgcacgagcacaagcggcggcagcagcg 242 |||||||||| |||||||||||||||| Sbjct: 185 tgcacgagcagcagcggcggcagcagcg 158
>ref|XM_953828.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcggcggcagcagcgacaagagca 251 ||||||||||||||| |||||||| Sbjct: 368 gcggcggcagcagcggcaagagca 391
>ref|XM_332033.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcggcggcagcagcgacaagagca 251 ||||||||||||||| |||||||| Sbjct: 368 gcggcggcagcagcggcaagagca 391
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 215 tgcacgagcacaagcggcggcagcagcg 242 |||||||||| |||||||||||||||| Sbjct: 4117945 tgcacgagcagcagcggcggcagcagcg 4117972
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cagcgacaagagcagcgtgg 257 |||||||||||||||||||| Sbjct: 993997 cagcgacaagagcagcgtgg 994016
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 gaccccgccggccacctccagcag 300 |||||||||| ||||||||||||| Sbjct: 52455 gaccccgccgtccacctccagcag 52432
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 gaccccgccggccacctccagcag 300 |||||||||| ||||||||||||| Sbjct: 317378 gaccccgccgtccacctccagcag 317355
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 gaccccgccggccacctccagcag 300 |||||||||| ||||||||||||| Sbjct: 5269 gaccccgccgtccacctccagcag 5292
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 221 agcacaagcggcggcagcagcgacaagagcagcgtg 256 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 63682 agcaccagcggcggcagcagccacagcagcagcgtg 63647
>emb|AJ748587.1| Phanerochaete chrysosporium partial mRNA for subtilisin-like protease (sl gene), strain Burdsall M1 Length = 2505 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgctcaaggacgcgcg 195 |||||||||||||||||||| Sbjct: 2002 gcggcgctcaaggacgcgcg 2021
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 4327 tcgccgtcgaccccgccggc 4346
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 agaagaagaagagagcggcg 181 |||||||||||||||||||| Sbjct: 99821 agaagaagaagagagcggcg 99802
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cgcggtcggactcggagcac 211 |||||||||||||||||||| Sbjct: 1757279 cgcggtcggactcggagcac 1757298
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tctcgccgtcgaccccgccg 286 |||||||||||||||||||| Sbjct: 106680 tctcgccgtcgaccccgccg 106661
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gagcacaagcggcggcagca 239 |||||||||||||||||||| Sbjct: 525999 gagcacaagcggcggcagca 526018
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 215 tgcacgagcacaagcggcggcagcagcg 242 |||||||||| |||||||||||||||| Sbjct: 4118054 tgcacgagcagcagcggcggcagcagcg 4118081
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 40205375 tcgccgtcgaccccgccggc 40205394 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 agaagaagaagagagcggcg 181 |||||||||||||||||||| Sbjct: 8524668 agaagaagaagagagcggcg 8524649
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 148459 tcgccgtcgaccccgccggc 148478
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 71153 tcgccgtcgaccccgccggc 71172
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 tgcgcgccctgaacggcgat 480 |||||||||||||||||||| Sbjct: 3106628 tgcgcgccctgaacggcgat 3106647
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ccccgccggccacctccagc 298 |||||||||||||||||||| Sbjct: 523842 ccccgccggccacctccagc 523823
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 215 tgcacgagcacaagcggcggcagcagcg 242 |||||||||| |||||||||||||||| Sbjct: 18582 tgcacgagcagcagcggcggcagcagcg 18609
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 agaagaagaagagagcggcg 181 |||||||||||||||||||| Sbjct: 139623 agaagaagaagagagcggcg 139604
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0016F11 Length = 134907 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 gacgacgaccaagttttgca 618 |||||||||||||||||||| Sbjct: 131542 gacgacgaccaagttttgca 131523
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gccgcagccgaggccgggca 20 |||||||||||||||||||| Sbjct: 1251738 gccgcagccgaggccgggca 1251757
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gcagcctcatcgtggagctc 373 |||||||||||||||||||| Sbjct: 140197 gcagcctcatcgtggagctc 140216
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gcagcctcatcgtggagctc 373 |||||||||||||||||||| Sbjct: 26008 gcagcctcatcgtggagctc 26027
>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete sequences Length = 224098 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 taaagtaacttgcaactcca 597 |||||||||||||||||||| Sbjct: 58369 taaagtaacttgcaactcca 58388
>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete sequences Length = 102671 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 taaagtaacttgcaactcca 597 |||||||||||||||||||| Sbjct: 95239 taaagtaacttgcaactcca 95258
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 gacgacgaccaagttttgca 618 |||||||||||||||||||| Sbjct: 35289 gacgacgaccaagttttgca 35270
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ttccgcttctgctccctcgg 90 |||||||||||||||||||| Sbjct: 97582 ttccgcttctgctccctcgg 97563
>dbj|AK108257.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A10, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 tgcacgagcacaagcggcggcagcagcg 242 |||||||||| |||||||||||||||| Sbjct: 224 tgcacgagcagcagcggcggcagcagcg 197
>dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full insert sequence Length = 3464 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tctcgccgtcgaccccgccg 286 |||||||||||||||||||| Sbjct: 174 tctcgccgtcgaccccgccg 155
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgccgtcgaccccgccggc 288 |||||||||||||||||||| Sbjct: 444 tcgccgtcgaccccgccggc 463
>ref|NM_210155.1| Eremothecium gossypii AEL060Cp (AEL060C), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gagcacaagcggcggcagca 239 |||||||||||||||||||| Sbjct: 360 gagcacaagcggcggcagca 341
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 taaagtaacttgcaactcca 597 |||||||||||||||||||| Sbjct: 219472 taaagtaacttgcaactcca 219491
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete sequence Length = 205436 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cgtgacatagccaagaaggt 454 |||||||||||||||||||| Sbjct: 182825 cgtgacatagccaagaaggt 182806
>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere region, complete sequence Length = 67332 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 taaagtaacttgcaactcca 597 |||||||||||||||||||| Sbjct: 47275 taaagtaacttgcaactcca 47294 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,605,862 Number of Sequences: 3902068 Number of extensions: 4605862 Number of successful extensions: 100915 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99123 Number of HSP's gapped (non-prelim): 1782 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)