ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal32m10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469450.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1067 Score = 363 bits (183), Expect = 4e-97 Identities = 411/487 (84%) Strand = Plus / Plus Query: 3 gccgctcgaccgcggcgccgaggccacgcccgaggacaaggaccgcgtcgaccagatcgc 62 ||||||||||||||||| ||| |||||| | ||||||||||| |||||||| |||| | Sbjct: 343 gccgctcgaccgcggcgtcgacgccacggcggaggacaaggagcgcgtcgagaagattgt 402 Query: 63 gcagcggctggaggaggtgagcccgaccaaggagccgctcaagtccgagctcctcaacgg 122 |||| ||||||||||||| || |||||||| |||||||| || ||||||||||| Sbjct: 403 tcagcaactggaggaggtgaaccaagtgaaggagccactcaagtctgatctcctcaacgg 462 Query: 123 caagtgggagctcctctacaccacctccacttccattctccagccacagaggccaaagtt 182 ||| |||||||| |||||||||||||| ||||| || || ||||||||||||||||| Sbjct: 463 caaatgggagcttctctacaccacctcagaatccatactgcaaccacagaggccaaagtt 522 Query: 183 tctgaggccatacgggacgatttaccaggcgatcaacaccgacacgctacgagctcaaaa 242 ||||||||| | |||||||||||||| || ||||| || ||||| || |||| ||||| Sbjct: 523 tctgaggccgtttgggacgatttaccaagcaatcaatactgacactttaagagcccaaaa 582 Query: 243 catggagacactgccttacttcaatcaggtcactgccaacttggtgcctctcaactctag 302 |||||||| ||| || || |||||||| |||||||||||||| |||||||| ||||| Sbjct: 583 tatggagacgtggccctattttaatcaggttactgccaacttggtacctctcaattctag 642 Query: 303 aaaagtggcagttaggtttgattacttcaaaatatttagcctgatccaaatcaaagcacc 362 || |||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct: 643 aagagtggcagttcggtttgattacttcaaaatatttaatttgatttcaatcaaagcacc 702 Query: 363 tggaagtggcaaaggtgaactagagatcacatatcttgatgaagagctcagggtttcaag 422 ||| ||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| Sbjct: 703 tggcagtggtaaaggtgaactagaaattacatatcttgatgaagagctcagggcctcaag 762 Query: 423 aggagacaaggggaacttgttcgtgctgaagatggtcgacccattataccgagttccgtt 482 ||| || |||||||| |||||| | ||||| ||||| |||||| |||| ||||||| || Sbjct: 763 aggcgataaggggaatttgttcatactgaaaatggttgacccaacatacagagttccatt 822 Query: 483 gtaataa 489 ||||||| Sbjct: 823 gtaataa 829
>dbj|AK070474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052I15, full insert sequence Length = 1068 Score = 363 bits (183), Expect = 4e-97 Identities = 411/487 (84%) Strand = Plus / Plus Query: 3 gccgctcgaccgcggcgccgaggccacgcccgaggacaaggaccgcgtcgaccagatcgc 62 ||||||||||||||||| ||| |||||| | ||||||||||| |||||||| |||| | Sbjct: 344 gccgctcgaccgcggcgtcgacgccacggcggaggacaaggagcgcgtcgagaagattgt 403 Query: 63 gcagcggctggaggaggtgagcccgaccaaggagccgctcaagtccgagctcctcaacgg 122 |||| ||||||||||||| || |||||||| |||||||| || ||||||||||| Sbjct: 404 tcagcaactggaggaggtgaaccaagtgaaggagccactcaagtctgatctcctcaacgg 463 Query: 123 caagtgggagctcctctacaccacctccacttccattctccagccacagaggccaaagtt 182 ||| |||||||| |||||||||||||| ||||| || || ||||||||||||||||| Sbjct: 464 caaatgggagcttctctacaccacctcagaatccatactgcaaccacagaggccaaagtt 523 Query: 183 tctgaggccatacgggacgatttaccaggcgatcaacaccgacacgctacgagctcaaaa 242 ||||||||| | |||||||||||||| || ||||| || ||||| || |||| ||||| Sbjct: 524 tctgaggccgtttgggacgatttaccaagcaatcaatactgacactttaagagcccaaaa 583 Query: 243 catggagacactgccttacttcaatcaggtcactgccaacttggtgcctctcaactctag 302 |||||||| ||| || || |||||||| |||||||||||||| |||||||| ||||| Sbjct: 584 tatggagacgtggccctattttaatcaggttactgccaacttggtacctctcaattctag 643 Query: 303 aaaagtggcagttaggtttgattacttcaaaatatttagcctgatccaaatcaaagcacc 362 || |||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct: 644 aagagtggcagttcggtttgattacttcaaaatatttaatttgatttcaatcaaagcacc 703 Query: 363 tggaagtggcaaaggtgaactagagatcacatatcttgatgaagagctcagggtttcaag 422 ||| ||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| Sbjct: 704 tggcagtggtaaaggtgaactagaaattacatatcttgatgaagagctcagggcctcaag 763 Query: 423 aggagacaaggggaacttgttcgtgctgaagatggtcgacccattataccgagttccgtt 482 ||| || |||||||| |||||| | ||||| ||||| |||||| |||| ||||||| || Sbjct: 764 aggcgataaggggaatttgttcatactgaaaatggttgacccaacatacagagttccatt 823 Query: 483 gtaataa 489 ||||||| Sbjct: 824 gtaataa 830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 268 caggtcactgccaacttggtgcctctcaactctagaaaagtggcagttaggtttgattac 327 ||||| |||||||||||||| |||||||| ||||||| |||||||||| ||||||||||| Sbjct: 28011473 caggttactgccaacttggtacctctcaattctagaagagtggcagttcggtttgattac 28011532 Query: 328 ttcaaaatattta 340 ||||||||||||| Sbjct: 28011533 ttcaaaatattta 28011545 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 351 aatcaaagcacctggaagtggcaaaggtgaactagagatcacatatcttgatgaagagct 410 ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| Sbjct: 28011992 aatcaaagcacctggcagtggtaaaggtgaactagaaattacatatcttgatgaagagct 28012051 Query: 411 cagg 414 |||| Sbjct: 28012052 cagg 28012055 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 91 aaggagccgctcaagtccgagctcctcaacggcaagtgggagctcctctacaccacctc 149 |||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||| Sbjct: 28010587 aaggagccactcaagtctgatctcctcaacggcaaatgggagcttctctacaccacctc 28010645 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 169 cagaggccaaagtttctgaggccatacgggacgatttaccaggcgatcaacaccgacacg 228 ||||||||||||||||||||||| | |||||||||||||| || ||||| || ||||| Sbjct: 28010804 cagaggccaaagtttctgaggccgtttgggacgatttaccaagcaatcaatactgacact 28010863 Query: 229 ctacgagctcaaaacatggagac 251 || |||| ||||| |||||||| Sbjct: 28010864 ttaagagcccaaaatatggagac 28010886 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 3 gccgctcgaccgcggcgccgaggccacgcccgaggacaaggaccgcgtcga 53 ||||||||||||||||| ||| |||||| | ||||||||||| |||||||| Sbjct: 28010401 gccgctcgaccgcggcgtcgacgccacggcggaggacaaggagcgcgtcga 28010451
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 268 caggtcactgccaacttggtgcctctcaactctagaaaagtggcagttaggtttgattac 327 ||||| |||||||||||||| |||||||| ||||||| |||||||||| ||||||||||| Sbjct: 13553 caggttactgccaacttggtacctctcaattctagaagagtggcagttcggtttgattac 13494 Query: 328 ttcaaaatattta 340 ||||||||||||| Sbjct: 13493 ttcaaaatattta 13481 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Minus Query: 351 aatcaaagcacctggaagtggcaaaggtgaactagagatcacatatcttgatgaagagct 410 ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| Sbjct: 13034 aatcaaagcacctggcagtggtaaaggtgaactagaaattacatatcttgatgaagagct 12975 Query: 411 cagg 414 |||| Sbjct: 12974 cagg 12971 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 91 aaggagccgctcaagtccgagctcctcaacggcaagtgggagctcctctacaccacctc 149 |||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||| Sbjct: 14439 aaggagccactcaagtctgatctcctcaacggcaaatgggagcttctctacaccacctc 14381 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 169 cagaggccaaagtttctgaggccatacgggacgatttaccaggcgatcaacaccgacacg 228 ||||||||||||||||||||||| | |||||||||||||| || ||||| || ||||| Sbjct: 14222 cagaggccaaagtttctgaggccgtttgggacgatttaccaagcaatcaatactgacact 14163 Query: 229 ctacgagctcaaaacatggagac 251 || |||| ||||| |||||||| Sbjct: 14162 ttaagagcccaaaatatggagac 14140 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 3 gccgctcgaccgcggcgccgaggccacgcccgaggacaaggaccgcgtcga 53 ||||||||||||||||| ||| |||||| | ||||||||||| |||||||| Sbjct: 14625 gccgctcgaccgcggcgtcgacgccacggcggaggacaaggagcgcgtcga 14575
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 268 caggtcactgccaacttggtgcctctcaactctagaaaagtggcagttaggtttgattac 327 ||||| |||||||||||||| |||||||| ||||||| |||||||||| ||||||||||| Sbjct: 28102797 caggttactgccaacttggtacctctcaattctagaagagtggcagttcggtttgattac 28102856 Query: 328 ttcaaaatattta 340 ||||||||||||| Sbjct: 28102857 ttcaaaatattta 28102869 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 351 aatcaaagcacctggaagtggcaaaggtgaactagagatcacatatcttgatgaagagct 410 ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| Sbjct: 28103316 aatcaaagcacctggcagtggtaaaggtgaactagaaattacatatcttgatgaagagct 28103375 Query: 411 cagg 414 |||| Sbjct: 28103376 cagg 28103379 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 91 aaggagccgctcaagtccgagctcctcaacggcaagtgggagctcctctacaccacctc 149 |||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||| Sbjct: 28101911 aaggagccactcaagtctgatctcctcaacggcaaatgggagcttctctacaccacctc 28101969 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 169 cagaggccaaagtttctgaggccatacgggacgatttaccaggcgatcaacaccgacacg 228 ||||||||||||||||||||||| | |||||||||||||| || ||||| || ||||| Sbjct: 28102128 cagaggccaaagtttctgaggccgtttgggacgatttaccaagcaatcaatactgacact 28102187 Query: 229 ctacgagctcaaaacatggagac 251 || |||| ||||| |||||||| Sbjct: 28102188 ttaagagcccaaaatatggagac 28102210 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 3 gccgctcgaccgcggcgccgaggccacgcccgaggacaaggaccgcgtcga 53 ||||||||||||||||| ||| |||||| | ||||||||||| |||||||| Sbjct: 28101725 gccgctcgaccgcggcgtcgacgccacggcggaggacaaggagcgcgtcga 28101775
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 18 cgccgaggccacgcccgaggacaag 42 ||||||||||||||||||||||||| Sbjct: 174579 cgccgaggccacgcccgaggacaag 174555
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 gccgaggccacgcccgaggacaag 42 |||||||||||||||||||||||| Sbjct: 1155322 gccgaggccacgcccgaggacaag 1155345
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 gccgaggccacgcccgaggacaag 42 |||||||||||||||||||||||| Sbjct: 121491 gccgaggccacgcccgaggacaag 121514
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 gccgaggccacgcccgaggacaag 42 |||||||||||||||||||||||| Sbjct: 168725 gccgaggccacgcccgaggacaag 168748
>gb|AE005834.1| Caulobacter crescentus CB15 section 160 of 359 of the complete genome Length = 10982 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 gccgaggccacgcccgaggacaag 42 |||||||||||||||||||||||| Sbjct: 3291 gccgaggccacgcccgaggacaag 3314
>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 411 cagggtttcaagaggagacaaggggaacttgttcgtgctgaagatggtcgaccca 465 |||||||| |||||| |||||| | || ||||| || ||||||||||||||||| Sbjct: 33656 cagggttttaagaggtgacaagagaaagttgtttgtaatgaagatggtcgaccca 33710
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 50 tcgaccagatcgcgcagcggctggag 75 ||||||||||||||| |||||||||| Sbjct: 486845 tcgaccagatcgcgcggcggctggag 486870
>gb|AY169814.1| HIV-1 isolate 99USTWLA from USA, complete genome Length = 9186 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 tcttgatgaagagctcagggt 416 ||||||||||||||||||||| Sbjct: 8972 tcttgatgaagagctcagggt 8952
>emb|AL356220.12| Human DNA sequence from clone RP11-97H1 on chromosome 10 Contains part of the HPSE2 gene for heparanase 2, complete sequence Length = 139852 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 acctccacttccattctccag 165 ||||||||||||||||||||| Sbjct: 30567 acctccacttccattctccag 30587
>gb|AC114478.2| Homo sapiens chromosome 3 clone RP11-333K5, complete sequence Length = 158276 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 aagagctcagggtttcaagag 424 ||||||||||||||||||||| Sbjct: 37870 aagagctcagggtttcaagag 37850
>gb|AC090283.7| Homo sapiens chromosome 17, clone RP11-605F20, complete sequence Length = 168137 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcagggtttcaagaggagaca 430 ||||||||||||||||||||| Sbjct: 10815 tcagggtttcaagaggagaca 10795
>gb|AC073429.6| Homo sapiens BAC clone RP11-775H9 from 4, complete sequence Length = 114909 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 373 aaaggtgaactagagatcacatatc 397 ||||||||||||||||| ||||||| Sbjct: 57972 aaaggtgaactagagataacatatc 57996
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 cgccgaggccacgcccgaggacaag 42 |||||||||||||||||| |||||| Sbjct: 3892363 cgccgaggccacgcccgaagacaag 3892339
>gb|AC160649.2| Pan troglodytes BAC clone CH251-568N12 from chromosome unknown, complete sequence Length = 192241 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 aagagctcagggtttcaagag 424 ||||||||||||||||||||| Sbjct: 112999 aagagctcagggtttcaagag 112979
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 23 aggccacgcccgaggacaaggaccgcgtc 51 |||||||| |||||| ||||||||||||| Sbjct: 3925817 aggccacgaccgaggccaaggaccgcgtc 3925845 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ccgcggcgccgaggccacgcccga 35 |||||||||||| ||||||||||| Sbjct: 6911456 ccgcggcgccgacgccacgcccga 6911433
>gb|AC019254.12| Homo sapiens chromosome 15, clone RP11-424I19, complete sequence Length = 179030 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gcgcagcggctggaggaggtg 81 ||||||||||||||||||||| Sbjct: 124131 gcgcagcggctggaggaggtg 124151
>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174273 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 aagagctcagggtttcaagag 424 ||||||||||||||||||||| Sbjct: 5085 aagagctcagggtttcaagag 5105
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 cgccgaggccacgcccgaggacaag 42 |||||||||||| |||||||||||| Sbjct: 1039927 cgccgaggccacccccgaggacaag 1039903 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 accgcgtcgaccagatcgcg 63 |||||||||||||||||||| Sbjct: 4174542 accgcgtcgaccagatcgcg 4174561
>gb|AC004231.1|AC004231 Homo sapiens chromosome 17, clone hRPC.1110_E_20, complete sequence Length = 137022 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcagggtttcaagaggagaca 430 ||||||||||||||||||||| Sbjct: 124050 tcagggtttcaagaggagaca 124030
>emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-533L7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162986 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 aagagctcagggtttcaagag 424 ||||||||||||||||||||| Sbjct: 6671 aagagctcagggtttcaagag 6651
>dbj|AB070952.1| Streptomyces avermitilis peptide-3 biosynthetic gene cluster Length = 23451 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 23 aggccacgcccgaggacaaggaccgcgtc 51 |||||||| |||||| ||||||||||||| Sbjct: 17345 aggccacgaccgaggccaaggaccgcgtc 17317
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gcccgaggacaaggaccgcg 49 |||||||||||||||||||| Sbjct: 429754 gcccgaggacaaggaccgcg 429735
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gccgaggccacgcccgagga 38 |||||||||||||||||||| Sbjct: 3382188 gccgaggccacgcccgagga 3382207
>gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, complete sequence Length = 183557 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 atatcttgatgaagagctca 412 |||||||||||||||||||| Sbjct: 85665 atatcttgatgaagagctca 85646
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tcgaccagatcgcgcagcggctgg 73 ||||||| |||||||||||||||| Sbjct: 3696360 tcgaccacatcgcgcagcggctgg 3696337
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ggacaaggaccgcgtcgacc 55 |||||||||||||||||||| Sbjct: 295183 ggacaaggaccgcgtcgacc 295164
>gb|AC003079.2| Homo sapiens BAC clone GS1-303P24 from 7, complete sequence Length = 62331 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 atatcttgatgaagagctca 412 |||||||||||||||||||| Sbjct: 45736 atatcttgatgaagagctca 45755
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 48 cgtcgaccagatcgcgcagcggctggag 75 |||||||| |||||||||||||| |||| Sbjct: 4328651 cgtcgacctgatcgcgcagcggccggag 4328624 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gccgaggccacgcccgagga 38 |||||||||||||||||||| Sbjct: 2784216 gccgaggccacgcccgagga 2784197
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tcgaccgcggcgccgaggcc 27 |||||||||||||||||||| Sbjct: 2879016 tcgaccgcggcgccgaggcc 2879035
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 gaccagatcgcgcagcggctggaggagg 79 |||| |||||| |||||||||||||||| Sbjct: 311879 gaccggatcgctcagcggctggaggagg 311852
>gb|BC076452.1| Danio rerio zgc:91884, mRNA (cDNA clone MGC:91884 IMAGE:7039061), complete cds Length = 1330 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 135 cctctacaccacctccacttccattctccagc 166 ||||||||||||||||| ||||| ||| |||| Sbjct: 234 cctctacaccacctccatttccactcttcagc 265
>gb|AE011954.1| Xanthomonas axonopodis pv. citri str. 306, section 332 of 469 of the complete genome Length = 12615 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tcgaccagatcgcgcagcggctgg 73 ||||||| |||||||||||||||| Sbjct: 7982 tcgaccacatcgcgcagcggctgg 7959
>gb|AC016525.11| Homo sapiens chromosome 15 clone RP11-358M11 map 15q21.3, complete sequence Length = 256019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 caccacctccacttccattc 160 |||||||||||||||||||| Sbjct: 105798 caccacctccacttccattc 105817
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgtcgaccagatcgcgcagc 67 |||||||||||||||||||| Sbjct: 1142682 cgtcgaccagatcgcgcagc 1142663
>gb|AC010851.2| Leishmania major chromosome 22 clone L4134, complete sequence Length = 33339 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 gcgccgctcgaccgcggcgccgaggcca 28 |||||||||||| ||||||||| ||||| Sbjct: 24678 gcgccgctcgacggcggcgccgcggcca 24651
>gb|AC007419.7| Drosophila melanogaster, chromosome 2L, region 25E-25F, BAC clone BACR07G15, complete sequence Length = 190668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 caccacctccacttccattc 160 |||||||||||||||||||| Sbjct: 113928 caccacctccacttccattc 113947
>gb|AC008131.25| Homo sapiens chromosome 15 clone ctd-2265b18 map 15q21, complete sequence Length = 131891 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 caccacctccacttccattc 160 |||||||||||||||||||| Sbjct: 81416 caccacctccacttccattc 81397
>gb|AC175822.2| Pan troglodytes BAC clone CH251-442M6 from chromosome 7, complete sequence Length = 163335 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 atatcttgatgaagagctca 412 |||||||||||||||||||| Sbjct: 138364 atatcttgatgaagagctca 138345
>gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I, complete sequence Length = 92219 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 aagagctcagggtttcaaga 423 |||||||||||||||||||| Sbjct: 91780 aagagctcagggtttcaaga 91761
>ref|NM_001002329.1| Danio rerio zgc:91884 (zgc:91884), mRNA Length = 1330 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 135 cctctacaccacctccacttccattctccagc 166 ||||||||||||||||| ||||| ||| |||| Sbjct: 234 cctctacaccacctccatttccactcttcagc 265
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccgcgtcgaccagatcgcgc 64 |||||||||||||||||||| Sbjct: 3842871 ccgcgtcgaccagatcgcgc 3842852
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aggccacgcccgaggacaag 42 |||||||||||||||||||| Sbjct: 2512768 aggccacgcccgaggacaag 2512749
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gctcgaccgcggcgccgagg 25 |||||||||||||||||||| Sbjct: 2385393 gctcgaccgcggcgccgagg 2385412
>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete sequence Length = 122836 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 aagagctcagggtttcaaga 423 |||||||||||||||||||| Sbjct: 1196 aagagctcagggtttcaaga 1177
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ccgcggcgccgaggccacgcccga 35 |||| ||||||||||||||||||| Sbjct: 178276 ccgcagcgccgaggccacgcccga 178299
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 tggcagttaggtttgattac 327 |||||||||||||||||||| Sbjct: 2758919 tggcagttaggtttgattac 2758938
>emb|Z49538.1|SCYJR038C S.cerevisiae chromosome X reading frame ORF YJR038c Length = 4260 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 atcacatatcttgatgaaga 407 |||||||||||||||||||| Sbjct: 2657 atcacatatcttgatgaaga 2638
>gb|AE003611.3| Drosophila melanogaster chromosome 2L, section 20 of 83 of the complete sequence Length = 260731 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 caccacctccacttccattc 160 |||||||||||||||||||| Sbjct: 47056 caccacctccacttccattc 47037
>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete sequences Length = 195800 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tctcaactctagaaaagtgg 310 |||||||||||||||||||| Sbjct: 68440 tctcaactctagaaaagtgg 68459
>gb|L36344.1|YSCTGGMS Saccharomyces cerevisiae tRNA-Met, tRNA-Ser, tRNA-Gly genes and 24 ORFs Length = 42500 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 atcacatatcttgatgaaga 407 |||||||||||||||||||| Sbjct: 12739 atcacatatcttgatgaaga 12720
>emb|AL627229.10| Mouse DNA sequence from clone RP23-354L19 on chromosome 4, complete sequence Length = 149730 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctcagggtttcaagaggagacaag 432 ||||| |||||||||||||||||| Sbjct: 120921 ctcagcgtttcaagaggagacaag 120944 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,488,039 Number of Sequences: 3902068 Number of extensions: 4488039 Number of successful extensions: 88033 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86422 Number of HSP's gapped (non-prelim): 1607 length of query: 582 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 559 effective length of database: 17,143,297,704 effective search space: 9583103416536 effective search space used: 9583103416536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
