| Clone Name | baal33b08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 624 bits (315), Expect = e-176 Identities = 556/634 (87%), Gaps = 3/634 (0%) Strand = Plus / Plus Query: 25 gctggctaggcgaggatgtgcttaccaagcccacctactctcgcttctgtgcgcttcttg 84 ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 707 gctggctaggcgatgatgtgcttagaaagcccacctactctcgtttctgcgcgcttcttg 766 Query: 85 acaattacaacccacaccaagggtacaaagaagttgttactcagcaggataagcacgaag 144 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 767 acaattacaatccacatcaagggtacaaagaagttgttactcagcaggacaagcacgagg 826 Query: 145 aagcagcatttattgaagagattgcccggacagcaccgattaagtacttgcaccggtatt 204 ||| |||||||||||||||||||||| ||||||| || || |||||||| |||||||||| Sbjct: 827 aagtagcatttattgaagagattgccaggacagcgccaatcaagtacttacaccggtatt 886 Query: 205 tagtgctgaagggagtcgcatcccaagactatgatgacttcaaggcaatgctgacatccc 264 ||||||| ||||||||||| || ||||||||||| ||||||||| |||||||||||| | Sbjct: 887 tagtgctcaagggagtcgcgtctcaagactatgaggacttcaagagaatgctgacatcgc 946 Query: 265 tttggtttactttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatg 324 | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct: 947 tatggttcgatttgtatggaagaggtggcagttctagcagctcttctgcatttgagcatg 1006 Query: 325 tgtttgttggtgagataaaggaac--aga-gacaaggagagaccgaggtctcaggattcc 381 |||| ||||||||||| |||| || || |||| ||||||| |||||||||||||||| Sbjct: 1007 tgttcgttggtgagatcaagggacgacgaggacagggagagaatgaggtctcaggattcc 1066 Query: 382 ataactggattcagttttatctggaagaagccaagggaaatgtcgactaccaaggttaca 441 |||| |||||||||||||| |||||||||||||| || ||||| || ||||||||||||| Sbjct: 1067 ataattggattcagttttacctggaagaagccaatgggaatgtggattaccaaggttaca 1126 Query: 442 tattcccaagacggcgtggggaatcacctgattcggagacacaattactgaccgtgcaat 501 |||||||||| ||||||||||||| |||||||| |||||||| || |||| | || | Sbjct: 1127 tattcccaaggaggcgtggggaatcgcctgattcagagacacagctattgactattcagt 1186 Query: 502 ttgagtggcatggtgtgctgaaatcagtatcaagctctttgattggtgttagccctgagt 561 |||||||||| ||||| |||||||| ||||| ||| || |||||||||| |||||||||| Sbjct: 1187 ttgagtggcacggtgttctgaaatcggtatccagcactctgattggtgtcagccctgagt 1246 Query: 562 tcgagctggcactctacacactgtgcttctttatgggaggggaggataaccgtgtcgata 621 | ||| | ||||||||||| || |||||||||||||||||||| |||||||| || || | Sbjct: 1247 ttgaggttgcactctacacgctctgcttctttatgggaggggaagataaccgcgttgaga 1306 Query: 622 ttggcccgtacacagtgaacgtcaagtgctaccg 655 ||||||||||| ||| ||| ||||||||||||| Sbjct: 1307 ttggcccgtacggagtaaacatcaagtgctaccg 1340
>gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31120 putative serine protease-like protein mRNA, partial cds Length = 910 Score = 624 bits (315), Expect = e-176 Identities = 556/634 (87%), Gaps = 3/634 (0%) Strand = Plus / Plus Query: 25 gctggctaggcgaggatgtgcttaccaagcccacctactctcgcttctgtgcgcttcttg 84 ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 230 gctggctaggcgatgatgtgcttagaaagcccacctactctcgtttctgcgcgcttcttg 289 Query: 85 acaattacaacccacaccaagggtacaaagaagttgttactcagcaggataagcacgaag 144 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 290 acaattacaatccacatcaagggtacaaagaagttgttactcagcaggacaagcacgagg 349 Query: 145 aagcagcatttattgaagagattgcccggacagcaccgattaagtacttgcaccggtatt 204 ||| |||||||||||||||||||||| ||||||| || || |||||||| |||||||||| Sbjct: 350 aagtagcatttattgaagagattgccaggacagcgccaatcaagtacttacaccggtatt 409 Query: 205 tagtgctgaagggagtcgcatcccaagactatgatgacttcaaggcaatgctgacatccc 264 ||||||| ||||||||||| || ||||||||||| ||||||||| |||||||||||| | Sbjct: 410 tagtgctcaagggagtcgcgtctcaagactatgaggacttcaagagaatgctgacatcgc 469 Query: 265 tttggtttactttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatg 324 | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct: 470 tatggttcgatttgtatggaagaggtggcagttctagcagctcttctgcatttgagcatg 529 Query: 325 tgtttgttggtgagataaaggaac--aga-gacaaggagagaccgaggtctcaggattcc 381 |||| ||||||||||| |||| || || |||| ||||||| |||||||||||||||| Sbjct: 530 tgttcgttggtgagatcaagggacgacgaggacagggagagaatgaggtctcaggattcc 589 Query: 382 ataactggattcagttttatctggaagaagccaagggaaatgtcgactaccaaggttaca 441 |||| |||||||||||||| |||||||||||||| || ||||| || ||||||||||||| Sbjct: 590 ataattggattcagttttacctggaagaagccaatgggaatgtggattaccaaggttaca 649 Query: 442 tattcccaagacggcgtggggaatcacctgattcggagacacaattactgaccgtgcaat 501 |||||||||| ||||||||||||| |||||||| |||||||| || |||| | || | Sbjct: 650 tattcccaaggaggcgtggggaatcgcctgattcagagacacagctattgactattcagt 709 Query: 502 ttgagtggcatggtgtgctgaaatcagtatcaagctctttgattggtgttagccctgagt 561 |||||||||| ||||| |||||||| ||||| ||| || |||||||||| |||||||||| Sbjct: 710 ttgagtggcacggtgttctgaaatcggtatccagcactctgattggtgtcagccctgagt 769 Query: 562 tcgagctggcactctacacactgtgcttctttatgggaggggaggataaccgtgtcgata 621 | ||| | ||||||||||| || |||||||||||||||||||| |||||||| || || | Sbjct: 770 ttgaggttgcactctacacgctctgcttctttatgggaggggaagataaccgcgttgaga 829 Query: 622 ttggcccgtacacagtgaacgtcaagtgctaccg 655 ||||||||||| ||| ||| ||||||||||||| Sbjct: 830 ttggcccgtacggagtaaacatcaagtgctaccg 863
>dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full insert sequence Length = 1837 Score = 624 bits (315), Expect = e-176 Identities = 556/634 (87%), Gaps = 3/634 (0%) Strand = Plus / Plus Query: 25 gctggctaggcgaggatgtgcttaccaagcccacctactctcgcttctgtgcgcttcttg 84 ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 899 gctggctaggcgatgatgtgcttagaaagcccacctactctcgtttctgcgcgcttcttg 958 Query: 85 acaattacaacccacaccaagggtacaaagaagttgttactcagcaggataagcacgaag 144 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 959 acaattacaatccacatcaagggtacaaagaagttgttactcagcaggacaagcacgagg 1018 Query: 145 aagcagcatttattgaagagattgcccggacagcaccgattaagtacttgcaccggtatt 204 ||| |||||||||||||||||||||| ||||||| || || |||||||| |||||||||| Sbjct: 1019 aagtagcatttattgaagagattgccaggacagcgccaatcaagtacttacaccggtatt 1078 Query: 205 tagtgctgaagggagtcgcatcccaagactatgatgacttcaaggcaatgctgacatccc 264 ||||||| ||||||||||| || ||||||||||| ||||||||| |||||||||||| | Sbjct: 1079 tagtgctcaagggagtcgcgtctcaagactatgaggacttcaagagaatgctgacatcgc 1138 Query: 265 tttggtttactttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatg 324 | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct: 1139 tatggttcgatttgtatggaagaggtggcagttctagcagctcttctgcatttgagcatg 1198 Query: 325 tgtttgttggtgagataaaggaac--aga-gacaaggagagaccgaggtctcaggattcc 381 |||| ||||||||||| |||| || || |||| ||||||| |||||||||||||||| Sbjct: 1199 tgttcgttggtgagatcaagggacgacgaggacagggagagaatgaggtctcaggattcc 1258 Query: 382 ataactggattcagttttatctggaagaagccaagggaaatgtcgactaccaaggttaca 441 |||| |||||||||||||| |||||||||||||| || ||||| || ||||||||||||| Sbjct: 1259 ataattggattcagttttacctggaagaagccaatgggaatgtggattaccaaggttaca 1318 Query: 442 tattcccaagacggcgtggggaatcacctgattcggagacacaattactgaccgtgcaat 501 |||||||||| ||||||||||||| |||||||| |||||||| || |||| | || | Sbjct: 1319 tattcccaaggaggcgtggggaatcgcctgattcagagacacagctattgactattcagt 1378 Query: 502 ttgagtggcatggtgtgctgaaatcagtatcaagctctttgattggtgttagccctgagt 561 |||||||||| ||||| |||||||| ||||| ||| || |||||||||| |||||||||| Sbjct: 1379 ttgagtggcacggtgttctgaaatcggtatccagcactctgattggtgtcagccctgagt 1438 Query: 562 tcgagctggcactctacacactgtgcttctttatgggaggggaggataaccgtgtcgata 621 | ||| | ||||||||||| || |||||||||||||||||||| |||||||| || || | Sbjct: 1439 ttgaggttgcactctacacgctctgcttctttatgggaggggaagataaccgcgttgaga 1498 Query: 622 ttggcccgtacacagtgaacgtcaagtgctaccg 655 ||||||||||| ||| ||| ||||||||||||| Sbjct: 1499 ttggcccgtacggagtaaacatcaagtgctaccg 1532
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 394 bits (199), Expect = e-106 Identities = 332/374 (88%), Gaps = 3/374 (0%) Strand = Plus / Plus Query: 25 gctggctaggcgaggatgtgcttaccaagcccacctactctcgcttctgtgcgcttcttg 84 ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 109791 gctggctaggcgatgatgtgcttagaaagcccacctactctcgtttctgcgcgcttcttg 109850 Query: 85 acaattacaacccacaccaagggtacaaagaagttgttactcagcaggataagcacgaag 144 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 109851 acaattacaatccacatcaagggtacaaagaagttgttactcagcaggacaagcacgagg 109910 Query: 145 aagcagcatttattgaagagattgcccggacagcaccgattaagtacttgcaccggtatt 204 ||| |||||||||||||||||||||| ||||||| || || |||||||| |||||||||| Sbjct: 109911 aagtagcatttattgaagagattgccaggacagcgccaatcaagtacttacaccggtatt 109970 Query: 205 tagtgctgaagggagtcgcatcccaagactatgatgacttcaaggcaatgctgacatccc 264 ||||||| ||||||||||| || ||||||||||| ||||||||| |||||||||||| | Sbjct: 109971 tagtgctcaagggagtcgcgtctcaagactatgaggacttcaagagaatgctgacatcgc 110030 Query: 265 tttggtttactttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatg 324 | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct: 110031 tatggttcgatttgtatggaagaggtggcagttctagcagctcttctgcatttgagcatg 110090 Query: 325 tgtttgttggtgagataaaggaac--aga-gacaaggagagaccgaggtctcaggattcc 381 |||| ||||||||||| |||| || || |||| ||||||| |||||||||||||||| Sbjct: 110091 tgttcgttggtgagatcaagggacgacgaggacagggagagaatgaggtctcaggattcc 110150 Query: 382 ataactggattcag 395 |||| ||||||||| Sbjct: 110151 ataattggattcag 110164 Score = 151 bits (76), Expect = 3e-33 Identities = 160/188 (85%) Strand = Plus / Plus Query: 468 cctgattcggagacacaattactgaccgtgcaatttgagtggcatggtgtgctgaaatca 527 |||||||| |||||||| || |||| | || ||||||||||| ||||| |||||||| Sbjct: 110404 cctgattcagagacacagctattgactattcagtttgagtggcacggtgttctgaaatcg 110463 Query: 528 gtatcaagctctttgattggtgttagccctgagttcgagctggcactctacacactgtgc 587 ||||| ||| || |||||||||| ||||||||||| ||| | ||||||||||| || ||| Sbjct: 110464 gtatccagcactctgattggtgtcagccctgagtttgaggttgcactctacacgctctgc 110523 Query: 588 ttctttatgggaggggaggataaccgtgtcgatattggcccgtacacagtgaacgtcaag 647 ||||||||||||||||| |||||||| || || |||||||||||| ||| ||| ||||| Sbjct: 110524 ttctttatgggaggggaagataaccgcgttgagattggcccgtacggagtaaacatcaag 110583 Query: 648 tgctaccg 655 |||||||| Sbjct: 110584 tgctaccg 110591 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 393 cagttttatctggaagaagccaagggaaatgtcgactaccaaggttacatattcccaaga 452 |||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 110244 cagttttacctggaagaagccaatgggaatgtggattaccaaggttacatattcccaagg 110303 Query: 453 cggcgtggggaatc 466 ||||||||||||| Sbjct: 110304 aggcgtggggaatc 110317
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 394 bits (199), Expect = e-106 Identities = 332/374 (88%), Gaps = 3/374 (0%) Strand = Plus / Plus Query: 25 gctggctaggcgaggatgtgcttaccaagcccacctactctcgcttctgtgcgcttcttg 84 ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 27167148 gctggctaggcgatgatgtgcttagaaagcccacctactctcgtttctgcgcgcttcttg 27167207 Query: 85 acaattacaacccacaccaagggtacaaagaagttgttactcagcaggataagcacgaag 144 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 27167208 acaattacaatccacatcaagggtacaaagaagttgttactcagcaggacaagcacgagg 27167267 Query: 145 aagcagcatttattgaagagattgcccggacagcaccgattaagtacttgcaccggtatt 204 ||| |||||||||||||||||||||| ||||||| || || |||||||| |||||||||| Sbjct: 27167268 aagtagcatttattgaagagattgccaggacagcgccaatcaagtacttacaccggtatt 27167327 Query: 205 tagtgctgaagggagtcgcatcccaagactatgatgacttcaaggcaatgctgacatccc 264 ||||||| ||||||||||| || ||||||||||| ||||||||| |||||||||||| | Sbjct: 27167328 tagtgctcaagggagtcgcgtctcaagactatgaggacttcaagagaatgctgacatcgc 27167387 Query: 265 tttggtttactttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatg 324 | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct: 27167388 tatggttcgatttgtatggaagaggtggcagttctagcagctcttctgcatttgagcatg 27167447 Query: 325 tgtttgttggtgagataaaggaac--aga-gacaaggagagaccgaggtctcaggattcc 381 |||| ||||||||||| |||| || || |||| ||||||| |||||||||||||||| Sbjct: 27167448 tgttcgttggtgagatcaagggacgacgaggacagggagagaatgaggtctcaggattcc 27167507 Query: 382 ataactggattcag 395 |||| ||||||||| Sbjct: 27167508 ataattggattcag 27167521 Score = 151 bits (76), Expect = 3e-33 Identities = 160/188 (85%) Strand = Plus / Plus Query: 468 cctgattcggagacacaattactgaccgtgcaatttgagtggcatggtgtgctgaaatca 527 |||||||| |||||||| || |||| | || ||||||||||| ||||| |||||||| Sbjct: 27167761 cctgattcagagacacagctattgactattcagtttgagtggcacggtgttctgaaatcg 27167820 Query: 528 gtatcaagctctttgattggtgttagccctgagttcgagctggcactctacacactgtgc 587 ||||| ||| || |||||||||| ||||||||||| ||| | ||||||||||| || ||| Sbjct: 27167821 gtatccagcactctgattggtgtcagccctgagtttgaggttgcactctacacgctctgc 27167880 Query: 588 ttctttatgggaggggaggataaccgtgtcgatattggcccgtacacagtgaacgtcaag 647 ||||||||||||||||| |||||||| || || |||||||||||| ||| ||| ||||| Sbjct: 27167881 ttctttatgggaggggaagataaccgcgttgagattggcccgtacggagtaaacatcaag 27167940 Query: 648 tgctaccg 655 |||||||| Sbjct: 27167941 tgctaccg 27167948 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 393 cagttttatctggaagaagccaagggaaatgtcgactaccaaggttacatattcccaaga 452 |||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 27167601 cagttttacctggaagaagccaatgggaatgtggattaccaaggttacatattcccaagg 27167660 Query: 453 cggcgtggggaatc 466 ||||||||||||| Sbjct: 27167661 aggcgtggggaatc 27167674
>gb|AY110353.1| Zea mays CL9084_1 mRNA sequence Length = 668 Score = 333 bits (168), Expect = 4e-88 Identities = 326/381 (85%) Strand = Plus / Minus Query: 275 tttgtatggaagatgtggtaactctagctgctcttctgcatttgagcatgtgtttgttgg 334 ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 659 tttgtatggaagaggtggcaactctagctgctcttctgcctttgagcatgtgtttgttgg 600 Query: 335 tgagataaaggaacagagacaaggagagaccgaggtctcaggattccataactggattca 394 |||||| || | || | | ||||| |||| ||||| ||||| ||||||||||||||||| Sbjct: 599 tgagatcaaaggacggggncaaggggagagtgaggtatcaggcttccataactggattca 540 Query: 395 gttttatctggaagaagccaagggaaatgtcgactaccaaggttacatattcccaagacg 454 |||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| || Sbjct: 539 gttttacctggaagaagccaagggaaatgtggattaccaaggttatatatttccaaggcg 480 Query: 455 gcgtggggaatcacctgattcggagacacaattactgaccgtgcaatttgagtggcatgg 514 ||||| ||||| |||||||| |||| ||| | ||||| || || |||||||||||||| Sbjct: 479 ccgtggtgaatcgcctgattcagagatacagctgctgactgttcagtttgagtggcatgg 420 Query: 515 tgtgctgaaatcagtatcaagctctttgattggtgttagccctgagttcgagctggcact 574 ||||||||||||||||| ||| | |||||||| || || |||||||| ||| | ||||| Sbjct: 419 cgtgctgaaatcagtatccagcacgttgattggcgtcagtcctgagtttgaggttgcact 360 Query: 575 ctacacactgtgcttctttatgggaggggaggataaccgtgtcgatattggcccgtacac 634 |||||| ||||| | |||||||| |||||||| ||||||||||||||||||| Sbjct: 359 ctacacgttgtgcnnnnnngttggaggggaagataaccgcgtcgatattggcccgtacag 300 Query: 635 agtgaacgtcaagtgctaccg 655 |||||||||||||||||||| Sbjct: 299 tgtgaacgtcaagtgctaccg 279
>gb|BT000202.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1361 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 369 gtctcaggattccataactggattcagttttatctggaagaagccaagggaaatgtcgac 428 ||||| ||||||||||||||| |||||||||| |||| |||||||| |||| ||| || Sbjct: 970 gtctctggattccataactggcttcagttttacttggaggaagccaaaggaactgtagat 1029 Query: 429 taccaaggttacatatt 445 || ||||| || ||||| Sbjct: 1030 tatcaaggctatatatt 1046 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 306 tcttctgcatttgagcatgtgtttgttggtgagat 340 |||||||| ||||||||||| ||||| |||||||| Sbjct: 913 tcttctgcgtttgagcatgtctttgtaggtgagat 947
>gb|AY093205.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1685 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 369 gtctcaggattccataactggattcagttttatctggaagaagccaagggaaatgtcgac 428 ||||| ||||||||||||||| |||||||||| |||| |||||||| |||| ||| || Sbjct: 1115 gtctctggattccataactggcttcagttttacttggaggaagccaaaggaactgtagat 1174 Query: 429 taccaaggttacatatt 445 || ||||| || ||||| Sbjct: 1175 tatcaaggctatatatt 1191 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 306 tcttctgcatttgagcatgtgtttgttggtgagat 340 |||||||| ||||||||||| ||||| |||||||| Sbjct: 1058 tcttctgcgtttgagcatgtctttgtaggtgagat 1092
>gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, complete cds Length = 96124 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattgccc 171 |||||||||||||||||||||||||| Sbjct: 53482 agcagcatttattgaagagattgccc 53507
>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete sequence Length = 207183 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagagattgccc 171 |||||||||||||||||||||||||| Sbjct: 61043 agcagcatttattgaagagattgccc 61018
>gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, complete cds Length = 1480 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Plus Query: 306 tcttctgcatttgagcatgtgtttgttggtga 337 ||||||||||| || ||||||||||||||||| Sbjct: 1021 tcttctgcattcgaacatgtgtttgttggtga 1052
>emb|AL356789.16| Human DNA sequence from clone RP5-1076L12 on chromosome 1p32.1-33 Contains the 3' end of a variant of the gene for a novel protein, complete sequence Length = 99102 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattg 168 ||||||||||||||||||||||| Sbjct: 12420 agcagcatttattgaagagattg 12442
>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete sequence Length = 209743 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattg 168 ||||||||||||||||||||||| Sbjct: 94236 agcagcatttattgaagagattg 94258
>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7 Length = 201471 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 tcttctgcatttgagcatgtgtttgttggtgagat 340 |||||||| ||||||||||| ||||| |||||||| Sbjct: 173622 tcttctgcgtttgagcatgtctttgtaggtgagat 173588
>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45 Length = 199548 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 tcttctgcatttgagcatgtgtttgttggtgagat 340 |||||||| ||||||||||| ||||| |||||||| Sbjct: 159451 tcttctgcgtttgagcatgtctttgtaggtgagat 159417
>emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1706 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 tcttctgcatttgagcatgtgtttgttggtgagat 340 |||||||| ||||||||||| ||||| |||||||| Sbjct: 772 tcttctgcgtttgagcatgtctttgtaggtgagat 738
>gb|AC007276.3| Homo sapiens BAC clone RP11-226O1 from 7, complete sequence Length = 172573 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattgccc 171 |||| ||||||||||||||||||||| Sbjct: 107356 agcaccatttattgaagagattgccc 107381
>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the gene for a novel protein, complete sequence Length = 86097 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agcagcatttattgaagagattgccc 171 |||| ||||||||||||||||||||| Sbjct: 73138 agcaccatttattgaagagattgccc 73113
>ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus similar to Placental protein 11 precursor (PP11) (LOC583987), mRNA Length = 960 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 306 tcttctgcatttgagcatgtgtttgttggtgaga 339 ||||||| ||||||||||||||||| ||||||| Sbjct: 505 tcttctgggtttgagcatgtgtttgtaggtgaga 538
>emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chromosome 13 Contains a novel gene, complete sequence Length = 184561 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agcagcatttattgaagagattgccc 171 |||| ||||||||||||||||||||| Sbjct: 108186 agcaccatttattgaagagattgccc 108161
>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33 Contains a CpG island, complete sequence Length = 80730 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagat 166 ||||||||||||||||||||| Sbjct: 2693 agcagcatttattgaagagat 2713
>emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chromosome 10 Contains an adenylyl cyclase-associated protein 1 (CAP 1) pseudogene, a novel zinc finger protein gene (LOC220992), three novel genes, the ZNF32 gene for zinc finger protein 32 (KOX30), the ZNF32OS1 gene for zinc finger protein 32 opposite strand 1, the ZNF32OS2 gene for zinc finger protein 32 opposite strand 2, a ribosomal protein L21 (RPL21) pseudogene and three CpG islands, complete sequence Length = 80106 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 ggaagaagccaagggaaatgt 424 ||||||||||||||||||||| Sbjct: 71320 ggaagaagccaagggaaatgt 71300
>gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromosome 12, complete sequence Length = 171738 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 58012 catttattgaagagattgccc 57992
>emb|AL590139.11| Human DNA sequence from clone RP11-349N19 on chromosome X Contains the 3' end of the GRIA3 gene for glutamate receptor ionotrophic AMPA 3 and a H3 histone, family 3B (H3.3B) (H3F3B) pseudogene, complete sequence Length = 75359 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 65370 catttattgaagagattgccc 65390
>emb|AL590386.5| Human DNA sequence from clone RP11-721G21 on chromosome 9, complete sequence Length = 90510 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 18642 catttattgaagagattgccc 18662
>emb|AL137841.9| Human DNA sequence from clone RP11-42J13 on chromosome Xq27.3-28, complete sequence Length = 64079 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 24388 catttattgaagagattgccc 24408
>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157801 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 63082 catttattgaagagattgccc 63062
>gb|AC090448.5| Homo sapiens chromosome 8, clone RP11-142M8, complete sequence Length = 82020 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 74914 catttattgaagagattgccc 74894
>gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequence Length = 158963 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 149918 catttattgaagagattgccc 149938
>emb|CT574567.3| Pan troglodytes chromosome X clone PTB-059K09 map Xq28, complete sequence Length = 163464 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 126386 catttattgaagagattgccc 126406
>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete sequences Length = 100403 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattgcc 170 |||| |||||||||||||||||||| Sbjct: 71714 agcaccatttattgaagagattgcc 71738
>dbj|AP004288.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1735D4 Length = 212373 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 catttattgaagagattgccc 171 ||||||||||||||||||||| Sbjct: 137248 catttattgaagagattgccc 137228
>gb|AC150687.3| Bos taurus BAC CH240-243M2 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 144223 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 100696 agcagcatttattgaagaga 100715
>gb|AC147390.4| Pan troglodytes BAC clone RP43-51G14 from 7, complete sequence Length = 168525 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 42449 agcagcatttattgaagaga 42468
>gb|AC146097.4| Pan troglodytes BAC clone RP43-50K16 from 7, complete sequence Length = 183088 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 48068 agcagcatttattgaagaga 48049
>gb|AC092249.3| Canis familiaris clone RP81-256F7, complete sequence Length = 42879 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 8011 agcagcatttattgaagaga 8030
>ref|XM_844365.1| PREDICTED: Canis familiaris similar to LINE-1 reverse transcriptase homolog (LOC607615), mRNA Length = 801 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 229 agcagcatttattgaagaga 210
>gb|AC004855.1| Homo sapiens PAC clone RP4-673O11 from 7, complete sequence Length = 74816 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 7336 agcagcatttattgaagaga 7317
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence Length = 151373 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 gagataaaggaacagagacaagga 359 ||||||||| |||||||||||||| Sbjct: 102043 gagataaagaaacagagacaagga 102066
>ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507023.220) partial mRNA Length = 13521 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ttgttggtgagataaaggaa 347 |||||||||||||||||||| Sbjct: 13103 ttgttggtgagataaaggaa 13122
>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence Length = 205784 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 gagataaaggaacagagacaagga 359 ||||||||| |||||||||||||| Sbjct: 195940 gagataaagaaacagagacaagga 195917
>ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509171.100) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ttgttggtgagataaaggaa 347 |||||||||||||||||||| Sbjct: 1493 ttgttggtgagataaaggaa 1512
>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20 Length = 477159 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 344993 agcagcatttattgaagaga 344974
>gb|AY049008.1| Homo sapiens mitochondrial ceramidase gene, complete cds; nuclear gene for mitochondrial product Length = 61550 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 53814 agcagcatttattgaagaga 53833
>gb|AC073424.8| Homo sapiens BAC clone RP11-653O17 from 7, complete sequence Length = 191141 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 10224 agcagcatttattgaagaga 10243
>gb|AC074024.4| Homo sapiens BAC clone RP11-791J18 from 7, complete sequence Length = 98341 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 1716 agcagcatttattgaagaga 1697
>gb|AC004161.1| Homo sapiens BAC clone CTA-208K23 from 7, complete sequence Length = 112237 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cagcatttattgaagagatt 167 |||||||||||||||||||| Sbjct: 107230 cagcatttattgaagagatt 107249
>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence Length = 208178 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 176942 agcagcatttattgaagaga 176961
>emb|Z98880.1|HS179P9 Human DNA sequence from clone RP1-179P9 on chromosome 6q22 Contains the 3' part of the ROS1 gene for v-ros UR2 sarcoma virus oncogene homolog 1 (avian), a novel gene and two CpG islands, complete sequence Length = 108260 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 61416 agcagcatttattgaagaga 61435
>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H for major histocompatibility complex, class I, H (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5 pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6, HLA-K for major histocompatibility complex, class I, K, HLA-21 pseudogene, HLA-A for major histocompatibility complex, class I, A, HCP5P3 for HLA complex P5 pseudogene 3, HLA-80 pseudogene, MICD for MHC class I polypeptide-related sequence D, HCG9 for HLA complex group 9, HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for major histocompatibility complex, class I, J (pseudogene), HCG8 for HLA complex group 8, 5' end of C6orf12 for chromosome 6 open reading frame 12 and five CpG islands, complete sequence Length = 159427 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ggtgagataaaggaacagagacaa 356 |||||| ||||||||||||||||| Sbjct: 87501 ggtgaggtaaaggaacagagacaa 87524
>emb|AL831782.4| Human DNA sequence from clone RP4-636P16 on chromosome 1, complete sequence Length = 71948 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 22468 agcagcatttattgaagaga 22487
>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a novel protein similar to KIAA0592, solute carrier family 9 member 3 (SLC9A3) pseudogene and novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 163231 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 116834 agcagcatttattgaagaga 116815
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 107220 agcagcatttattgaagaga 107239
>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part of gene FLJ10824, a solute carrier family 9 (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene, the ASAH2 gene for N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 and a dynein cytoplasmic intermediate polypeptide 2 (DNCI2) pseudogene, complete sequence Length = 162228 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 70115 agcagcatttattgaagaga 70096
>emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on chromosome 1 Contains the 3' end of a novel gene, a ribosomal protein L6 (RPL6) pseudogene and the 5' end of a novel gene, complete sequence Length = 159158 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 28386 agcagcatttattgaagaga 28405
>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 182653 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 146414 agcagcatttattgaagaga 146433
>gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chromosome 10, complete sequence Length = 167069 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 51433 agcagcatttattgaagaga 51452
>emb|AL162231.20| Human DNA sequence from clone RP11-195F19 on chromosome 9 Contains the GALT gene for galactose-1-phosphate uridylytransferase, the IL11RA gene for interleukin 11 receptor, alpha, the SCYA27, SCYA19 and SCYA21 genes for small inducible cytokine subfamily A (Cys-Cys) members 27, 19 and 21, three novel genes and four CpG islands, complete sequence Length = 186433 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 109444 agcagcatttattgaagaga 109425
>emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chromosome 6 Contains part of a novel gene, part of the gene for a novel protein (FLJ32724) and a CpG island, complete sequence Length = 120988 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cagcatttattgaagagatt 167 |||||||||||||||||||| Sbjct: 58505 cagcatttattgaagagatt 58486
>emb|AL121894.26|HSA218C14 Human DNA sequence from clone RP11-218C14 on chromosome 20 Contains the 3' end of a novel gene, two genes for novel proteins similar to cystatin 9-like (mouse) (CST9L), the CST9L gene for cystatin 9-like (mouse), a cystatin 9-like (mouse) pseudogene, the CST3 gene for cystatin C, a novel gene and a CpG island, complete sequence Length = 141079 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 41023 agcagcatttattgaagaga 41042
>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a zinc finger protein pseudogene, the ZNF25 gene for zinc finger protein 25 (KOX 19), the 5' end of the ZNF33A gene for zinc finger protein 33a (KOX 31) and two CpG islands, complete sequence Length = 161452 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgcc 170 |||||||||||||||||||| Sbjct: 23119 catttattgaagagattgcc 23138
>emb|AL121982.19|HS1185H19 Human DNA sequence from clone RP5-1185H19 on chromosome 1p13.1-13.3 Contains two novel genes and a CpG island, complete sequence Length = 104780 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 94888 agcagcatttattgaagaga 94907
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 11545 agcagcatttattgaagaga 11564
>gb|AC025283.6| Homo sapiens chromosome 16 clone RP11-433P17, complete sequence Length = 179511 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 38247 agcagcatttattgaagaga 38266 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aagcagcatttattgaagagattg 168 ||||| |||||||||||||||||| Sbjct: 31499 aagcaccatttattgaagagattg 31522
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tgtatggaagatgtggtaac 296 |||||||||||||||||||| Sbjct: 85805 tgtatggaagatgtggtaac 85786
>gb|AC023813.6| Homo sapiens chromosome 16 clone CTC-527H23, complete sequence Length = 127725 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 6483 agcagcatttattgaagaga 6464
>emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chromosome 6, complete sequence Length = 40072 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ggtgagataaaggaacagagacaa 356 |||||| ||||||||||||||||| Sbjct: 12899 ggtgaggtaaaggaacagagacaa 12922
>gb|AC121248.2| Homo sapiens chromosome 3 clone RP11-64C1, complete sequence Length = 185845 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 154730 agcagcatttattgaagaga 154711
>gb|AF020669.1|HSMTM07 Homo sapiens myotubularin (MTM1) gene, exon 7 Length = 567 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aattacaacccacaccaagg 106 |||||||||||||||||||| Sbjct: 48 aattacaacccacaccaagg 29
>gb|AC090589.9| Homo sapiens chromosome 11, clone RP11-390K5, complete sequence Length = 190017 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 189386 agcagcatttattgaagaga 189405
>emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chromosome 6, complete sequence Length = 131368 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ggtgagataaaggaacagagacaa 356 |||||| ||||||||||||||||| Sbjct: 112984 ggtgaggtaaaggaacagagacaa 113007
>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence Length = 80723 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ttcaaggcaatgctgacatc 262 |||||||||||||||||||| Sbjct: 16220 ttcaaggcaatgctgacatc 16201
>gb|AC022029.7| Homo sapiens chromosome 10 clone RP11-93L14, complete sequence Length = 140040 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 33979 agcagcatttattgaagaga 33998
>gb|AC099786.2| Homo sapiens chromosome 1 clone RP11-510C10, complete sequence Length = 181443 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 68366 agcagcatttattgaagaga 68347
>gb|AC108067.3| Homo sapiens BAC clone RP11-554D13 from 4, complete sequence Length = 122825 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 97622 agcagcatttattgaagaga 97603
>gb|AC107934.3| Homo sapiens chromosome 8, clone RP11-960H2, complete sequence Length = 161638 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgcc 170 |||||||||||||||||||| Sbjct: 54133 catttattgaagagattgcc 54152
>gb|AC009758.8| Homo sapiens chromosome 11, clone RP11-101E4, complete sequence Length = 141485 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 114129 agcagcatttattgaagaga 114148
>gb|AC090802.6| Homo sapiens chromosome 8, clone RP11-152P17, complete sequence Length = 162549 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aagcagcatttattgaagagattg 168 ||||| |||||||||||||||||| Sbjct: 105005 aagcaccatttattgaagagattg 105028
>gb|AF391283.1|AF391283 Homo sapiens 11p15.5 clone LOH11A, partial sequence Length = 82761 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 56813 agcagcatttattgaagaga 56832
>gb|AC044814.6| Homo sapiens chromosome 8, clone RP11-688B7, complete sequence Length = 186369 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 catttattgaagagattgcc 170 |||||||||||||||||||| Sbjct: 93210 catttattgaagagattgcc 93191
>gb|AC020729.7| Homo sapiens BAC clone RP11-507M13 from 4, complete sequence Length = 75208 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 48699 agcagcatttattgaagaga 48718
>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence Length = 202956 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 30958 agcagcatttattgaagaga 30977
>gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complete sequence Length = 168591 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 45590 agcagcatttattgaagaga 45571
>gb|AC012593.8| Homo sapiens BAC clone RP11-511B24 from 2, complete sequence Length = 166074 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 50386 agcagcatttattgaagaga 50405
>gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complete sequence Length = 137631 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 62837 agcagcatttattgaagaga 62818
>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete sequence Length = 231294 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 15955 agcagcatttattgaagaga 15936
>gb|AC146416.4| Pan troglodytes BAC clone RP43-32B6 from chromosome 7, complete sequence Length = 180657 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 31009 agcagcatttattgaagaga 30990
>gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 209932 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aattacaacccacaccaagg 106 |||||||||||||||||||| Sbjct: 53411 aattacaacccacaccaagg 53392
>gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite sequence Length = 458 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ttccataactggattcagtt 397 |||||||||||||||||||| Sbjct: 353 ttccataactggattcagtt 372
>gb|AF101874.4|AF101874 Homo sapiens clone pTWB9n12.11T7 sequence Length = 10749 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 2678 agcagcatttattgaagaga 2659
>gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167311 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 agcagcatttattgaagagattgc 169 |||| ||||||||||||||||||| Sbjct: 78787 agcaccatttattgaagagattgc 78764
>gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-15, complete sequence Length = 185652 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 97728 agcagcatttattgaagaga 97747
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ggtgagataaaggaacagagacaa 356 |||||| ||||||||||||||||| Sbjct: 1531994 ggtgaggtaaaggaacagagacaa 1531971
>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 acatccctttggtttacttt 277 |||||||||||||||||||| Sbjct: 161828 acatccctttggtttacttt 161809
>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region Length = 319486 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ggtgagataaaggaacagagacaa 356 |||||| ||||||||||||||||| Sbjct: 86738 ggtgaggtaaaggaacagagacaa 86715
>ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337 (ENSANGG00000014848), partial mRNA Length = 658 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 556 ctgagttcgagctggcactctaca 579 ||||| |||||||||||||||||| Sbjct: 56 ctgagctcgagctggcactctaca 79
>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete sequence Length = 312283 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 catttattgaagagattgcc 170 |||||||||||||||||||| Sbjct: 102630 catttattgaagagattgcc 102649
>emb|CR391939.4| Zebrafish DNA sequence from clone CH211-269G3 in linkage group 18, complete sequence Length = 83565 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttcttgacaattacaaccca 98 |||||||||||||||||||| Sbjct: 37973 ttcttgacaattacaaccca 37992
>gb|AC003966.1|AC003966 Homo sapiens chromosome 16, cosmid clone 385D9, complete sequence Length = 36037 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 33226 agcagcatttattgaagaga 33245 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aagcagcatttattgaagagattg 168 ||||| |||||||||||||||||| Sbjct: 26481 aagcaccatttattgaagagattg 26504
>gb|U01882.1|HSU01882 Homo sapiens SS-A/Ro autoantigen 52 kda component gene, complete cds Length = 13270 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 7386 agcagcatttattgaagaga 7405
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 tttgagcatgtgtttgttggtgag 338 |||||||||||||||||| ||||| Sbjct: 1523454 tttgagcatgtgtttgtttgtgag 1523477
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 agcagcatttattgaagagattgc 169 |||| ||||||||||||||||||| Sbjct: 70543 agcaccatttattgaagagattgc 70566
>gb|U13657.1|HSROSSA1 Human 52 kD Ro/SSA autoantigen (RO52) gene, exons 1 and 2 Length = 2796 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 1156 agcagcatttattgaagaga 1175
>gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q28, complete sequence Length = 198434 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aattacaacccacaccaagg 106 |||||||||||||||||||| Sbjct: 195756 aattacaacccacaccaagg 195737
>gb|AC018410.24| Homo sapiens chromosome 11, clone RP11-17G12, complete sequence Length = 147024 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 64383 agcagcatttattgaagaga 64364
>dbj|AP003484.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-734C14, complete sequence Length = 206750 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agcagcatttattgaagaga 165 |||||||||||||||||||| Sbjct: 102295 agcagcatttattgaagaga 102276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,476,416 Number of Sequences: 3902068 Number of extensions: 5476416 Number of successful extensions: 102482 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102192 Number of HSP's gapped (non-prelim): 287 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)