>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  151 bits (381), Expect = 2e-36
 Identities = 75/125 (60%), Positives = 87/125 (69%)
 Frame = +1

Query: 52  ASETSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGR 231
           A + S S     S+L  ++P  R S   +++KKAKKVQT+QP+GPGGG+  K+GVDASGR
Sbjct: 10  ALKPSSSPLLQRSKLGGVRPSARPSLV-IVAKKAKKVQTAQPYGPGGGVAFKEGVDASGR 68

Query: 232 PAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXX 411
            AKGKGVYQFA KYGANVDGYSPIY PEEWSPSGD Y GGKTGL LW             
Sbjct: 69  VAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGAL 128

Query: 412 XVYNT 426
            VY+T
Sbjct: 129 LVYST 133

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  131 bits (330), Expect = 1e-30
 Identities = 65/123 (52%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
 Frame = +1

Query: 67  PSTFS--GHSQLQRIQPFTRSS-SFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGRPA 237
           PS+F     S ++ +   +RSS SF V +   KK++  +P G GGG++L+DGVD+SGR  
Sbjct: 13  PSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKP 72

Query: 238 KGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXXXV 417
            GKGVYQF  KYGANVDGYSPIYN EEW+P+GD YAGG TGLL+W              V
Sbjct: 73  TGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLV 132

Query: 418 YNT 426
           YNT
Sbjct: 133 YNT 135

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  130 bits (327), Expect = 3e-30
 Identities = 59/102 (57%), Positives = 71/102 (69%)
 Frame = +1

Query: 121 SSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSP 300
           SSSF+V++   KK++T +P+G  G + L+DGVDASGR  KGKGVYQ+  KYGANVDGYSP
Sbjct: 32  SSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSP 91

Query: 301 IYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXXXVYNT 426
           IYN +EWSPSGD Y GG TGL +W              VYNT
Sbjct: 92  IYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNT 133

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  130 bits (327), Expect = 3e-30
 Identities = 59/102 (57%), Positives = 71/102 (69%)
 Frame = +1

Query: 121 SSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSP 300
           SSSF+V++   KK++T +P+G  G + L+DGVDASGR  KGKGVYQ+  KYGANVDGYSP
Sbjct: 32  SSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSP 91

Query: 301 IYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXXXVYNT 426
           IYN +EWSPSGD Y GG TGL +W              VYNT
Sbjct: 92  IYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNT 133

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  130 bits (326), Expect = 4e-30
 Identities = 59/102 (57%), Positives = 70/102 (68%)
 Frame = +1

Query: 121 SSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSP 300
           SSSFRV +   KK++T +P+G  G + L+DGVDASGR  KGKGVYQF  KYGANVDGYSP
Sbjct: 30  SSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSP 89

Query: 301 IYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXXXVYNT 426
           IYN ++WSPSGD Y GG TGL +W              V+NT
Sbjct: 90  IYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNT 131

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  127 bits (319), Expect = 2e-29
 Identities = 61/115 (53%), Positives = 73/115 (63%)
 Frame = +1

Query: 82  GHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQF 261
           G   L R  P    SSFR+++   KK++T +PFG  G ++L+DGVDASGR  KG GVY+F
Sbjct: 26  GLPSLTRASP----SSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKF 81

Query: 262 ASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXXXXXVYNT 426
             KYGANVDGYSPIYN +EWS SGD Y GG TGL +W              VYNT
Sbjct: 82  VDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 136

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  122 bits (307), Expect = 6e-28
 Identities = 61/128 (47%), Positives = 77/128 (60%)
 Frame = +1

Query: 43  GFYASETSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVDA 222
           GF   +T+     G   L R +P     SF++++   KK++T +PFG  G ++L+DGVDA
Sbjct: 16  GFTVEKTAAR---GLPSLTRARP-----SFKIVASGVKKIKTDKPFGINGSMDLRDGVDA 67

Query: 223 SGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXX 402
           SGR  KG GVY++  KYGANVDGYSPIYN  EWS SGD Y GG TGL +W          
Sbjct: 68  SGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127

Query: 403 XXXXVYNT 426
               VYNT
Sbjct: 128 GALLVYNT 135

>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 211 GVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPS 330
           G+ A+GR     G   F+    ++  G+SP Y+P  WSP+
Sbjct: 27  GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 142 SKKAKKVQTSQPFGPG--GGLELKDGVDASGRPAKGKGVYQFASKYGAN 282
           SK+ K+ +      P   GG+ L DG  A+ R A+G  +  FA K GA+
Sbjct: 382 SKRQKRNEYESMQAPNVIGGVRLPDGKGATIRLARGASLADFADKIGAD 430

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 24/96 (25%)
 Frame = -2

Query: 401  PSRIPARVATQSNNPV-----FPPA**SPLGDHSSGLYIGLYPSTFAPYLL--------- 264
            PS+     +T +++PV     FPPA   PLG    G   G+YP+   P LL         
Sbjct: 1892 PSKPTVLRSTSTSSPVRPAATFPPATHCPLG----GTLDGVYPTLMEPVLLPKEAPRVAR 1947

Query: 263  ----------ANW*TPFPLAGLPDASTPSFNSNPPP 186
                      A    P   +GL  AS+PS  S P P
Sbjct: 1948 PERPRADTGHAFLAKPPARSGLEPASSPSKGSEPRP 1983

>VB15_VARV (P33877) Protein B15|
          Length = 149

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 541 VIKPRDIGA-RISTLDDVNPCMVQYIVW 461
           V  P+  G  R++++DDV  C+ +YI W
Sbjct: 9   VFSPQHCGCDRLTSIDDVRQCLTEYIYW 36

>VB15_VACCV (P24772) Protein B15|
          Length = 149

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 541 VIKPRDIGA-RISTLDDVNPCMVQYIVW 461
           V  P+  G  R++++DDV  C+ +YI W
Sbjct: 9   VFSPQHCGCDRLTSIDDVRQCLTEYIYW 36

>VB15_VACCC (P21089) Protein B15|
          Length = 149

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 541 VIKPRDIGA-RISTLDDVNPCMVQYIVW 461
           V  P+  G  R++++DDV  C+ +YI W
Sbjct: 9   VFSPQHCGCDRLTSIDDVKQCLTEYIYW 36

>PKSL_BACSU (Q05470) Putative polyketide synthase pksL (PKS)|
          Length = 4538

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 109  PFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVD--ASGRPA 237
            PF R   +  ++ KA++ +T +PF P   +  K  VD  ASG+PA
Sbjct: 2527 PFARDRYWIDVNAKAEEKRTEEPFAPVQPVIPKPSVDREASGKPA 2571

>ALB2_PEA (P08688) Albumin-2 (PA2)|
          Length = 231

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 154 KKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVD 288
           KK+    PF  G   E  +G+DA+ R  +GK VY F     A +D
Sbjct: 103 KKIADMFPFFEGTVFE--NGIDAAYRSTRGKEVYLFKGDQYARID 145

>MURE_WIGBR (Q8D2Z1) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 496

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
 Frame = +3

Query: 321 VSKW*LLCGRKDRVVALGGYSC----------WNSAGWCSSCLQY*CFGFLKPGIASQTM 470
           ++KW  L G K  ++   GY C           NSA  C   L +    FLK  I +  M
Sbjct: 129 IAKWLFLLGEKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNF----FLKKNINTVVM 184

Query: 471 YCTMQGFTSSRVD 509
             +  G   +RV+
Sbjct: 185 EVSSHGLHQNRVN 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,255,550
Number of Sequences: 219361
Number of extensions: 2035321
Number of successful extensions: 5855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5848
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)