ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal33a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15HT1R_DROME (P20905) 5-hydroxytryptamine receptor 1 (5-HT recept... 29 3.0
2R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein hom... 28 6.8

>5HT1R_DROME (P20905) 5-hydroxytryptamine receptor 1 (5-HT receptor) (Serotonin|
           receptor 1) (5HT-dro)
          Length = 564

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 28  MDL*TQTGRRHSSLKGHRHHHQWEGSTARFTTAKKMKFV-FTNLWLLMSNSKREYPA 195
           M L  Q  RRH S + HR+H          +TA    FV F + W+  +  K   PA
Sbjct: 1   MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAAGKATVPA 57



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>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12|
          Length = 1296

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 85   HHQWEGSTARFTTAKKMKFVFTNLWLLMSNSKREYPALHQLL*PILWCQEIIQV 246
            H +WE S A+F   K +K  + +L  L+  +   +P L QL+  +  C++++++
Sbjct: 1135 HSEWEVSNAKFPQLKILKLEYVSLMKLIV-ADDAFPNLEQLV--LHDCEDLMEI 1185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,029,431
Number of Sequences: 219361
Number of extensions: 933551
Number of successful extensions: 2019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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