>YHGN_SHIFL (P67145) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -3

Query: 179 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 51
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

>YHGN_ECOLI (P67143) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -3

Query: 179 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 51
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

>YHGN_ECO57 (P67144) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -3

Query: 179 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 51
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

>FTHS_ZYMMO (Q5NQC7) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 557

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 162 NLPVCIASREPSSLGSADTAVANATTNRTYPIR 64
           +LPVCIA  + S   SAD    NA T   +PIR
Sbjct: 482 DLPVCIAKTQSSF--SADPKAKNAPTGHIFPIR 512

>Y571_MYCPN (P75207) Hypothetical ABC transporter ATP-binding MG390 homolog|
           (D02_orf660)
          Length = 660

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   QFCGDCLYMRYGENVLEAKSNPNWICPVCRGICNCSI 111
           QFC D L   + + V +     +W CP    + NCSI
Sbjct: 435 QFCKDKLVTLFEDKVNDCNFKVSWKCPKVINLNNCSI 471

>PDXJ_NITMU (Q2Y865) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 241

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +2

Query: 38  RMCWKLRAILIGYVRFVVAFATAVSAEPREDGSLLAMHTGRLSDLGTNQWHTTSLQQIEQ 217
           R C +L    I    FV A    + A       ++ +HTG  +D  T       L+++  
Sbjct: 116 RACHRLAEAGIRVSLFVDAEPAQIDASVEAGAPVIEIHTGHYADAQTTDEQQGELERVRA 175

Query: 218 ELNQGIQAQLT 250
            +++G+   LT
Sbjct: 176 AVSKGLNHGLT 186

>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2)
          Length = 875

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
 Frame = +1

Query: 16  CLYMRYGENVLEAKSNPNWICPVCR-----GICNCS-----ICRTKRGWFPTG 144
           CLY R GE V      P+ +CP  +     G+C        +CR +  WF  G
Sbjct: 492 CLYGRQGETVPRPGDPPHLLCPAYQEEEEAGLCWVDSSWSLLCREEGTWFLAG 544

>POLS2_MOUSE (Q5K2P8) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2) (Protease serine 36)
          Length = 849

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 16  CLYMRYGENVLEAKSNPNWICPVCRGICNCSICRTKRGW 132
           CLY R GE+V      P+ +CP  +       C    GW
Sbjct: 468 CLYGRQGESVPPPGDPPHLLCPAYQEEEEAGACWVDSGW 506

>CNOT2_MOUSE (Q8C5L3) CCR4-NOT transcription complex subunit 2 (CCR4-associated|
           factor 2)
          Length = 540

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 206 QIEQELNQGIQ--AQLTPRTSCHVPTRSLSTHQLPSRMLI*AATR*MM 343
           Q+ + L+QG Q  + +TP T   VPT SL T   PSR ++    R MM
Sbjct: 95  QLNRSLSQGTQLPSHVTPTTG--VPTMSLHTPPSPSRGILPMNPRNMM 140

>CNOT2_HUMAN (Q9NZN8) CCR4-NOT transcription complex subunit 2 (CCR4-associated|
           factor 2)
          Length = 540

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 206 QIEQELNQGIQ--AQLTPRTSCHVPTRSLSTHQLPSRMLI*AATR*MM 343
           Q+ + L+QG Q  + +TP T   VPT SL T   PSR ++    R MM
Sbjct: 95  QLNRSLSQGTQLPSHVTPTTG--VPTMSLHTPPSPSRGILPMNPRNMM 140

>SYS_NEIG1 (Q5F752) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 431

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 31  YGENVLEAKSNPNWICPVCRGICNCSICRT--KRGWFPTGNAYRKV 162
           + EN+L+A   P  +  +C G    S  +T     W P  N YR++
Sbjct: 311 HAENILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREI 356

>SODM2_BACCR (Q814I6) Superoxide dismutase [Mn] 2 (EC 1.15.1.1)|
          Length = 208

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 HTGRLSDLGTNQWHTTSLQQIEQELNQGIQAQ 244
           +  R  +  TN WHT +  Q+ ++  Q IQ+Q
Sbjct: 175 YQNRRPEFVTNWWHTVNWDQVNEKYLQAIQSQ 206

>DPO1_CHLAU (O08307) DNA polymerase I (EC 2.7.7.7) (POL I)|
          Length = 942

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 128 DGSLLAMHTGRLSDLGTNQWHT--TSLQQIEQELNQGIQAQLTPRTSCHVPTRSLSTHQL 301
           D + LA    RL +     + T  TSLQ +  +L  GI   + P T C++P    S  Q+
Sbjct: 344 DATALADLVSRLRNAPAFAFDTECTSLQPVASDL-VGISIAIAPDTVCYIPVGHQSETQV 402

Query: 302 P 304
           P
Sbjct: 403 P 403

>SC61A_KLULA (Q6CPY9) Protein transport protein SEC61 alpha subunit|
          Length = 480

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
 Frame = +3

Query: 30  VW*ECAGS*EQS*LDMSGLSWHLQLQY-----LQNQERMVPYWQCIPEGC----QTWVQI 182
           VW   AG+     + +SGLS+++Q  +     L +  + V Y   +   C    +TW++I
Sbjct: 324 VWGTRAGAPAGQQVALSGLSYYIQPPFSVTDALLDPIKTVVYVGFVLGACALFSKTWIEI 383

Query: 183 SGTLP 197
           SGT P
Sbjct: 384 SGTSP 388

>SPTB1_MOUSE (P15508) Spectrin beta chain, erythrocyte (Beta-I spectrin)|
          Length = 2127

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 65   LIGYVRFVVAFATAVSAEPREDGSLLAMHTGRLSDLGTNQWHTTSLQQIEQELNQGIQAQ 244
            L G  R V+A    VSA  RE   L+  H  +  D+G  Q     L +  Q+  QG +  
Sbjct: 988  LSGLERDVLAIRDRVSALERESQYLMESHPEQKEDIGQRQADVEKLWKGLQDALQGQELS 1047

Query: 245  L 247
            L
Sbjct: 1048 L 1048

>ENV_CAEVG (P31627) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Leader peptide; Surface protein; Transmembrane protein]
          Length = 942

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 12/36 (33%)
 Frame = -1

Query: 316 QHPAWQLV------------CAQRPRRHMAARSRSQ 245
           QHP WQ++            C QRP+RH     R+Q
Sbjct: 407 QHPVWQVMRDLDMVEHMTGECVQRPQRHNITVDRNQ 442

>TRA1_CAEBR (Q17308) Sex-determining transformer protein 1|
          Length = 1165

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 72  DMSGLSWHLQLQYLQNQERMVPYWQCIPEGC 164
           ++ GL  H+Q +++Q+ E+    W+C  EGC
Sbjct: 239 NLKGLVEHVQEKHVQSTEQEHHAWRCEWEGC 269

>WFDC8_HUMAN (Q8IUA0) WAP four-disulfide core domain protein 8 precursor|
           (Putative protease inhibitor WAP8)
          Length = 241

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 187 PLICTQV*QPSGMHCQ*GTILSWFCRYCSCKCHD 86
           PL+CT++ +P  +  +   ++   C +C  KC D
Sbjct: 205 PLLCTKIDKPKCLQDEECPLVEKCCSHCGLKCMD 238

>Y1513_PSEF5 (Q4KGJ3) UPF0271 protein PFL_1513|
          Length = 250

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 101 TAVSAEP--REDGSLLAMHTGRLSDLGTNQWHTTSLQQIEQELNQ 229
           T    EP    DGS L +H   L   G N     ++Q+I + LNQ
Sbjct: 202 TIARGEPLAASDGSALLLHANTLCVHGDNASSVAAVQRIREALNQ 246

>ACPS_ONYPE (Q6YQD4) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 127

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 37  ENVLEAKSNPNWICPVCRGICNCSICRTKRG 129
           E + +A   P  I P C+  CN SI   K+G
Sbjct: 56  EALFKAFQTPQKIDPTCQNYCNWSILNDKKG 86

>MYBA_HUMAN (P10243) Myb-related protein A (A-Myb)|
          Length = 752

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 155 GRLSDLGTNQWHTTSLQQIEQE--LNQGIQAQLTPRTSCHVPTRSLSTHQLPSRMLI 319
           GR  +   N W++T  +++EQE  L  GI+++ +     H P  ++   Q  ++  I
Sbjct: 170 GRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERSSSKLQHKPCAAMDHMQTQNQFYI 226

>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III|
          Length = 1008

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 164  SDLGTNQWHTTSLQQIEQELNQGIQAQLTPRTSCHVPTRSLSTHQLPSRM 313
            S +GT++W     ++  + + Q ++  LT R+S    T +++T + P  +
Sbjct: 857  SKIGTSEWDLKGGEEYVELMQQYVRPSLTNRSSSPTVTPTVNTDRQPKTL 906

>RUVB_SYNEL (Q8DGR1) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 363

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 185 WHTTSLQQIEQELNQGIQAQLTPRTSCHVPTRSLSTHQLPSRML 316
           +H   LQQI Q     +Q  +TP  +  +  RS  T ++  R+L
Sbjct: 199 YHPEELQQIVQRGAALLQTPITPEAALEIGRRSRGTPRIALRLL 242

>TACY_PAEAL (P23564) Alveolysin precursor (Thiol-activated cytolysin)|
          Length = 501

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 180 FVPKS---DNLPVCIASREPSSLGSA--DTAVANATTNRTYPIRIALS 52
           FVPK     N    +  R+  SL ++  D ++ ++ TNRTYP  I L+
Sbjct: 65  FVPKEGIQSNGKFIVVERDKKSLTTSPVDISIVDSITNRTYPGAIQLA 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,665,557
Number of Sequences: 219361
Number of extensions: 893150
Number of successful extensions: 3200
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3198
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)