ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal33a14 |
|---|---|
| Clone Library Name | barley_pub |
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 70.9 bits (172), Expect = 3e-12 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 3/206 (1%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDR 177 AL+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 665 ALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 Query: 178 RSVKNVGLAVIHKVLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLI 351 S+ + +L E + L+RS + N+ + LL L Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780 Query: 352 STAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQHMA 531 + KQ+ +SIA+CVA L A + A + ++ + N ST+S + +A Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRL-LA 838 Query: 532 LLCLGEIGRRKDLSNHDQIENIVIES 609 LL LGE+G DLS +++++++E+ Sbjct: 839 LLSLGEVGHHIDLSGQLELKSVILEA 864
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 70.9 bits (172), Expect = 3e-12 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 3/206 (1%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDR 177 AL+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 665 ALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 Query: 178 RSVKNVGLAVIHKVLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLI 351 S+ + +L E + L+RS + N+ + LL L Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780 Query: 352 STAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQHMA 531 + KQ+ +SIA+CVA L A + A + ++ + N ST+S + +A Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRL-LA 838 Query: 532 LLCLGEIGRRKDLSNHDQIENIVIES 609 LL LGE+G DLS +++++++E+ Sbjct: 839 LLSLGEVGHHIDLSGQLELKSVILEA 864
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 70.9 bits (172), Expect = 3e-12 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 3/206 (1%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDR 177 AL+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 665 ALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 Query: 178 RSVKNVGLAVIHKVLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLI 351 S+ + +L E + L+RS + N+ + LL L Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780 Query: 352 STAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQHMA 531 + KQ+ +SIA+CVA L A + A + ++ + N ST+S + +A Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRL-LA 838 Query: 532 LLCLGEIGRRKDLSNHDQIENIVIES 609 LL LGE+G DLS +++++++E+ Sbjct: 839 LLSLGEVGHHIDLSGQLELKSVILEA 864
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 70.9 bits (172), Expect = 3e-12 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 3/206 (1%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDR 177 AL+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 665 ALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 Query: 178 RSVKNVGLAVIHKVLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLI 351 S+ + +L E + L+RS + N+ + LL L Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780 Query: 352 STAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQHMA 531 + KQ+ +SIA+CVA L A + A + ++ + N ST+S + +A Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRL-LA 838 Query: 532 LLCLGEIGRRKDLSNHDQIENIVIES 609 LL LGE+G DLS +++++++E+ Sbjct: 839 LLSLGEVGHHIDLSGQLELKSVILEA 864
>CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) Length = 1235 Score = 61.6 bits (148), Expect = 2e-09 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 5/208 (2%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTIMVDRR 180 ALR ATL L++L + G + + T+LTEL L+S+ D+H+A LA++ T+ + Sbjct: 666 ALRLATLAALDALAQSQGLGLPPPAVRTVLTELPALVSENDMHVAQLAVDFLTTVTQTQP 725 Query: 181 SVKNVGLAVIHKVLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-TLLNSLIST 357 S + V VL E L L+ S + E + L SL++ Sbjct: 726 SSL---VEVSGPVLGELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTA 782 Query: 358 AKPSQSG----GLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQH 525 +Q G GL KQ S+A+CVA L A + + ++ + SST + Sbjct: 783 PVYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDAKSPHSST--GVKV 840 Query: 526 MALLCLGEIGRRKDLSNHDQIENIVIES 609 +A L L E+G+ +++ +++E+ Sbjct: 841 LAFLSLAEVGQVAGPGPQRELKTVLLEA 868
>CAND2_HUMAN (O75155) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) Length = 1119 Score = 59.3 bits (142), Expect = 8e-09 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 5/208 (2%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTIMVDRR 180 ALR ATL L++L + G + S+ + +L EL L+++ D+H+A LA++ T+ + Sbjct: 574 ALRLATLAALDALAQSQGLSLPPSAVQAVLAELPALVNESDMHVAQLAVDFLATVTQAQP 633 Query: 181 SVKNVGLAVIHKVLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-----TLLNS 345 + + V VL E L L+RS + + +LL + Sbjct: 634 ASL---VEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVDYAKLISLLTA 690 Query: 346 LISTAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQH 525 + GL KQ S+A+CVA L AA ++ AST L S+ K Sbjct: 691 PVYEQAVDGGPGLHKQVFHSLARCVAALS-AACPQEAASTASRLVCDARSPHSSTGVKV- 748 Query: 526 MALLCLGEIGRRKDLSNHDQIENIVIES 609 +A L L E+G+ +++ +++E+ Sbjct: 749 LAFLSLAEVGQVAGPGPQRELKAVLLEA 776
>CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) (TBP-interacting protein b) Length = 1273 Score = 57.4 bits (137), Expect = 3e-08 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 5/208 (2%) Frame = +1 Query: 1 ALRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTIMVDRR 180 ALR ATL L++L + G + + ++L EL L+S+ D+H+A LA++ T+ + Sbjct: 704 ALRLATLAALDALAQSQGLGLPPPAVRSVLAELPALVSENDMHVAQLAVDFLTTVTQTQP 763 Query: 181 SVKNVGLAVIHKVLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-TLLNSLIST 357 + + V VL E L L+ S + E + L SL++ Sbjct: 764 ASL---VEVSGPVLEELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTA 820 Query: 358 AKPSQSG----GLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSSTNSAKQH 525 +Q G GL KQ S+A+CVA L A + + ++ + SST + Sbjct: 821 PVYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDARSPHSST--GVKV 878 Query: 526 MALLCLGEIGRRKDLSNHDQIENIVIES 609 +A L L E+G+ +++ +++E+ Sbjct: 879 LAFLSLAEVGQVAGPGPQRELKTVLLEA 906
>DEGZ_CAEEL (Q10025) Degenerin-like protein T28D9.7 in chromosome II| Length = 982 Score = 32.3 bits (72), Expect = 1.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 387 GKTA*L*WFGSGNKGVQQSFKAYICRLHQCS 295 GKT + +FG GNK +Q F+ I +H+C+ Sbjct: 629 GKTGAIMFFGDGNKDNRQKFEKLIVEMHECA 659
>ENO2_TOXGO (Q9BPL7) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2)| (2-phospho-D-glycerate hydro-lyase 2) Length = 444 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Frame = -3 Query: 371 CDGLAVEIREFNKVSKLIFADCTSAAKNFWSACSACPCNRALLIKVRASGKTLCITAKPT 192 C+GL +++ + VS+ I A C A KN W + SG+T + + Sbjct: 349 CNGLLLKVNQIGTVSESIEA-CQLAQKNKWGVMVS-----------HRSGET-----EDS 391 Query: 191 FLTDL---LSTIIVQHSSNARAA-ICKSTSLMRVESSV 90 F+ DL L T ++ + R+ +CK LMR+E S+ Sbjct: 392 FIADLVVGLRTGQIKTGAPCRSERLCKYNQLMRIEESL 429
>EPHB3_MOUSE (P54754) Ephrin type-B receptor 3 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-5) (Developmental kinase 5) (SEK-4) Length = 993 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = +1 Query: 322 SFETLLNSLISTAKPSQSGGLSKQALFSIAQ----CVAVLCLAAGDKKCAST 465 SF L ++T K G LSK + Q C++++ + AGDKKCAST Sbjct: 157 SFSRLDAGRVNT-KVRSFGPLSKAGFYLAFQDQGACMSLISVRAGDKKCAST 207
>AROA_SHIDY (O87006) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/59 (37%), Positives = 31/59 (52%) Frame = -3 Query: 257 NRALLIKVRASGKTLCITAKPTFLTDLLSTIIVQHSSNARAAICKSTSLMRVESSVNIV 81 NRALL+ A GKT+ LT+LL + V+H NA AA+ S +L + I+ Sbjct: 26 NRALLLAALAHGKTV--------LTNLLDSDDVRHMLNALAALGVSYTLSADRTRCEII 76
>HEPS2_BACSU (P31114) Heptaprenyl diphosphate synthase component II (EC| 2.5.1.30) (HEPPP synthase subunit 2) (Spore germination protein C3) Length = 348 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +1 Query: 427 LCLAAGDKKCASTIEMLKGILNDDSSTNSAKQHMALLCLGEIGRRKDLSNHDQ 585 + + GD A ++EM+ I N+ + Q + +CLGEI + KD N +Q Sbjct: 135 IAMYTGDYMLAGSLEMMTRI-NEPKAHRILSQTIVEVCLGEIEQIKDKYNMEQ 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,788,799 Number of Sequences: 219361 Number of extensions: 1685610 Number of successful extensions: 3772 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3761 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
