ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal32l01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507377.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.22-1 mRNA Length = 1264 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 258 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 317 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 318 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 377 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 378 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 437 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 438 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 497 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 498 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 557 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 558 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 617 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 618 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 677 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 678 ctgaggcattttgggttga 696 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 117 cgccgtcaacgctctcgcggctgctccgcc 146
>ref|XM_478802.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1253 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 243 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 302 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 303 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 362 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 363 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 422 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 423 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 482 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 483 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 542 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 543 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 602 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 603 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 662 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 663 ctgaggcattttgggttga 681 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 102 cgccgtcaacgctctcgcggctgctccgcc 131
>ref|XM_506422.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.22-1 mRNA Length = 1421 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 286 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 345 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 346 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 405 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 406 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 465 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 466 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 525 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 526 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 585 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 586 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 645 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 646 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 705 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 706 ctgaggcattttgggttga 724 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 145 cgccgtcaacgctctcgcggctgctccgcc 174
>dbj|AK104308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-H04, full insert sequence Length = 1253 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 243 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 302 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 303 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 362 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 363 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 422 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 423 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 482 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 483 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 542 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 543 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 602 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 603 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 662 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 663 ctgaggcattttgggttga 681 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 102 cgccgtcaacgctctcgcggctgctccgcc 131
>dbj|AK104154.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B07, full insert sequence Length = 1263 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 257 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 316 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 317 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 376 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 377 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 436 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 437 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 496 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 497 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 556 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 557 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 616 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 617 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 676 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 677 ctgaggcattttgggttga 695 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 116 cgccgtcaacgctctcgcggctgctccgcc 145
>dbj|AK072835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F17, full insert sequence Length = 1421 Score = 458 bits (231), Expect = e-125 Identities = 387/439 (88%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 286 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 345 Query: 225 cgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaagaaa 284 ||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| Sbjct: 346 cgttcgaggtgatccgcgctcaccaggaaaaagctgctcgacttcctccggttgaagaaa 405 Query: 285 tacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaacatg 344 |||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 406 tacggaccattctggaccaaagtgttaggggtgtccttgccacccattctcagggtcatg 465 Query: 345 tgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttcccccatat 404 | || ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 466 ttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttcccccatat 525 Query: 405 tagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgctcac 464 ||||||| |||||||||||| ||||||||||||||||| | | || | |||||||||| | Sbjct: 526 tagcagttagtagtttagcaattcactcaaagaatctctctgaaaatcctaaatgctcgc 585 Query: 465 ttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggcgatg 524 || ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||| Sbjct: 586 ttctggttgccaaagaccctgaggacagaacagatactgtgattactgtatatggtgatg 645 Query: 525 ctatacctgttcccgacgaagaaaaagatgccgtaagaactgcatatttacggagacacc 584 | | ||||||| | ||| ||||||||||||| ||| ||| |||||| ||||| ||||| | Sbjct: 646 ccacacctgtttcagaccaagaaaaagatgcagtacgaagtgcatacttacgaagacatc 705 Query: 585 ctgaggccttttgggttga 603 ||||||| ||||||||||| Sbjct: 706 ctgaggcattttgggttga 724 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 145 cgccgtcaacgctctcgcggctgctccgcc 174
>gb|AY109869.1| Zea mays CL39903_1 mRNA sequence Length = 1027 Score = 375 bits (189), Expect = e-100 Identities = 291/325 (89%) Strand = Plus / Minus Query: 221 gacgcgttcgaggtgatccgcgctcaccaggtaaaagctgcccggcttcctcctgttgaa 280 |||||||||||||||||||||| |||||||| |||||||| || ||| |||| |||||| Sbjct: 1000 gacgcgttcgaggtgatccgcgttcaccaggcaaaagctgttcgtctttctccagttgaa 941 Query: 281 gaaatacgaaccattctggaccaaagtgtcagaggtgttctggctacccattctcaggaa 340 |||||||| |||||| |||||| |||||||||| ||||||| ||||||||||||||||| Sbjct: 940 gaaatacggaccattatggaccgaagtgtcagatgtgttcttgctacccattctcaggat 881 Query: 341 catgtgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttccccc 400 |||| |||||||||||||||||||||||||||||||| || ||||| ||||||| |||| Sbjct: 880 catgctggttatccatctggttcaatggttgattttgcatgtgatcaggatggttacccc 821 Query: 401 atattagcagtgagtagtttagcagttcactcaaagaatctcacaggaagtactaaatgc 460 |||||||||||||||||||||||||| || |||||||||||| | |||| | |||||||| Sbjct: 820 atattagcagtgagtagtttagcagtccattcaaagaatctctctggaaatcctaaatgc 761 Query: 461 tcacttttggttgccaaagatccagaggacagaacagatactgtaatcactgtatatggc 520 |||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 760 tcacttcttgttgccaaagatcctgaggacagaactgatactgtaatcactgtatatggc 701 Query: 521 gatgctatacctgttcccgacgaag 545 || ||| | |||||| | ||||||| Sbjct: 700 gacgctgttcctgtttctgacgaag 676
>dbj|AK121296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110F21, full insert sequence Length = 3078 Score = 355 bits (179), Expect = 1e-94 Identities = 308/351 (87%) Strand = Plus / Plus Query: 253 aaaagctgcccggcttcctcctgttgaagaaatacgaaccattctggaccaaagtgtcag 312 ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 2155 aaaagctgctcgacttcctccggttgaagaaatacggaccattctggaccaaagtgttag 2214 Query: 313 aggtgttctggctacccattctcaggaacatgtgggttatccatctggttcaatggttga 372 ||||| || || ||||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 2215 gggtgtccttgccacccattctcagggtcatgttggctatccgtctggttcaatggttga 2274 Query: 373 ttttgcgtgcgatcaagatggttcccccatattagcagtgagtagtttagcagttcactc 432 |||||| || ||||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 2275 ttttgcatgtgatcaggatggttcccccatattagcagttagtagtttagcaattcactc 2334 Query: 433 aaagaatctcacaggaagtactaaatgctcacttttggttgccaaagatccagaggacag 492 |||||||||| | | || | |||||||||| ||| ||||||||||||| || |||||||| Sbjct: 2335 aaagaatctctctgaaaatcctaaatgctcgcttctggttgccaaagaccctgaggacag 2394 Query: 493 aacagatactgtaatcactgtatatggcgatgctatacctgttcccgacgaagaaaaaga 552 |||||||||||| || ||||||||||| ||||| | ||||||| | ||| |||||||||| Sbjct: 2395 aacagatactgtgattactgtatatggtgatgccacacctgtttcagaccaagaaaaaga 2454 Query: 553 tgccgtaagaactgcatatttacggagacaccctgaggccttttgggttga 603 ||| ||| ||| |||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 2455 tgcagtacgaagtgcatacttacgaagacatcctgaggcattttgggttga 2505 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 182 cagatggccgcgcctgccgatgccccgggaggatctgccgacgcgttcgaggtgatccgc 241 |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 1215 cagatggcggcgcctgccgatgcaccgggcggatccgcggacgcgttcgaggtgatccgc 1274 Query: 242 gctcaccaggt 252 ||||||||||| Sbjct: 1275 gctcaccaggt 1285 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 924 cgccgtcaacgctctcgcggctgctccgcc 953
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 5e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 341 catgtgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttccccc 400 ||||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 23143873 catgttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttccccc 23143814 Query: 401 atattagcagtgagtagtttagcagttcactcaaag 436 ||||||||||| |||||||||||| ||||||||||| Sbjct: 23143813 atattagcagttagtagtttagcaattcactcaaag 23143778 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 182 cagatggccgcgcctgccgatgccccgggaggatctgccgacgcgttcgaggtgatccgc 241 |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 23144988 cagatggcggcgcctgccgatgcaccgggcggatccgcggacgcgttcgaggtgatccgc 23144929 Query: 242 gctcaccaggt 252 ||||||||||| Sbjct: 23144928 gctcaccaggt 23144918 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 253 aaaagctgcccggcttcctcctgttgaagaaatacgaaccattctggaccaaagtgtcag 312 ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 23144048 aaaagctgctcgacttcctccggttgaagaaatacggaccattctggaccaaagtgttag 23143989 Query: 313 aggtgttctggctacccattctcagg 338 ||||| || || ||||||||||||| Sbjct: 23143988 gggtgtccttgccacccattctcagg 23143963 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 453 ctaaatgctcacttttggttgccaaagatccagaggacagaacagatactgtaatcactg 512 |||||||||| ||| ||||||||||||| || |||||||||||||||||||| || |||| Sbjct: 23143455 ctaaatgctcgcttctggttgccaaagaccctgaggacagaacagatactgtgattactg 23143396 Query: 513 tatatggcgatgctatacctgt 534 ||||||| ||||| | |||||| Sbjct: 23143395 tatatggtgatgccacacctgt 23143374 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 543 aagaaaaagatgccgtaagaactgcatatttacggagacaccctgaggccttttgggt 600 ||||||||||||| ||| ||| |||||| ||||| ||||| |||||||| |||||||| Sbjct: 23143241 aagaaaaagatgcagtacgaagtgcatacttacgaagacatcctgaggcattttgggt 23143184 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 23145279 cgccgtcaacgctctcgcggctgctccgcc 23145250
>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1562_B11 Length = 112144 Score = 127 bits (64), Expect = 5e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 341 catgtgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttccccc 400 ||||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 6787 catgttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttccccc 6728 Query: 401 atattagcagtgagtagtttagcagttcactcaaag 436 ||||||||||| |||||||||||| ||||||||||| Sbjct: 6727 atattagcagttagtagtttagcaattcactcaaag 6692 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 182 cagatggccgcgcctgccgatgccccgggaggatctgccgacgcgttcgaggtgatccgc 241 |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 7902 cagatggcggcgcctgccgatgcaccgggcggatccgcggacgcgttcgaggtgatccgc 7843 Query: 242 gctcaccaggt 252 ||||||||||| Sbjct: 7842 gctcaccaggt 7832 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 253 aaaagctgcccggcttcctcctgttgaagaaatacgaaccattctggaccaaagtgtcag 312 ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 6962 aaaagctgctcgacttcctccggttgaagaaatacggaccattctggaccaaagtgttag 6903 Query: 313 aggtgttctggctacccattctcagg 338 ||||| || || ||||||||||||| Sbjct: 6902 gggtgtccttgccacccattctcagg 6877 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 453 ctaaatgctcacttttggttgccaaagatccagaggacagaacagatactgtaatcactg 512 |||||||||| ||| ||||||||||||| || |||||||||||||||||||| || |||| Sbjct: 6369 ctaaatgctcgcttctggttgccaaagaccctgaggacagaacagatactgtgattactg 6310 Query: 513 tatatggcgatgctatacctgt 534 ||||||| ||||| | |||||| Sbjct: 6309 tatatggtgatgccacacctgt 6288 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 543 aagaaaaagatgccgtaagaactgcatatttacggagacaccctgaggccttttgggt 600 ||||||||||||| ||| ||| |||||| ||||| ||||| |||||||| |||||||| Sbjct: 6155 aagaaaaagatgcagtacgaagtgcatacttacgaagacatcctgaggcattttgggt 6098 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 8193 cgccgtcaacgctctcgcggctgctccgcc 8164
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 127 bits (64), Expect = 5e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 341 catgtgggttatccatctggttcaatggttgattttgcgtgcgatcaagatggttccccc 400 ||||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 88057 catgttggctatccgtctggttcaatggttgattttgcatgtgatcaggatggttccccc 87998 Query: 401 atattagcagtgagtagtttagcagttcactcaaag 436 ||||||||||| |||||||||||| ||||||||||| Sbjct: 87997 atattagcagttagtagtttagcaattcactcaaag 87962 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 182 cagatggccgcgcctgccgatgccccgggaggatctgccgacgcgttcgaggtgatccgc 241 |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 89172 cagatggcggcgcctgccgatgcaccgggcggatccgcggacgcgttcgaggtgatccgc 89113 Query: 242 gctcaccaggt 252 ||||||||||| Sbjct: 89112 gctcaccaggt 89102 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 253 aaaagctgcccggcttcctcctgttgaagaaatacgaaccattctggaccaaagtgtcag 312 ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 88232 aaaagctgctcgacttcctccggttgaagaaatacggaccattctggaccaaagtgttag 88173 Query: 313 aggtgttctggctacccattctcagg 338 ||||| || || ||||||||||||| Sbjct: 88172 gggtgtccttgccacccattctcagg 88147 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 453 ctaaatgctcacttttggttgccaaagatccagaggacagaacagatactgtaatcactg 512 |||||||||| ||| ||||||||||||| || |||||||||||||||||||| || |||| Sbjct: 87639 ctaaatgctcgcttctggttgccaaagaccctgaggacagaacagatactgtgattactg 87580 Query: 513 tatatggcgatgctatacctgt 534 ||||||| ||||| | |||||| Sbjct: 87579 tatatggtgatgccacacctgt 87558 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 543 aagaaaaagatgccgtaagaactgcatatttacggagacaccctgaggccttttgggt 600 ||||||||||||| ||| ||| |||||| ||||| ||||| |||||||| |||||||| Sbjct: 87425 aagaaaaagatgcagtacgaagtgcatacttacgaagacatcctgaggcattttgggt 87368 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 89463 cgccgtcaacgctctcgcggctgctccgcc 89434
>ref|XM_478803.1| Oryza sativa (japonica cultivar-group), mRNA Length = 509 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 191 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 250 Query: 225 cgttcgaggtgatccgcgctcaccaggt 252 |||||||||||||||||||||||||||| Sbjct: 251 cgttcgaggtgatccgcgctcaccaggt 278 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 50 cgccgtcaacgctctcgcggctgctccgcc 79
>dbj|AK107962.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C10, full insert sequence Length = 509 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 165 cctcctcctcgccttctcagatggccgcgcctgccgatgccccgggaggatctgccgacg 224 |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || |||| Sbjct: 191 cctcctcctcctcctctcagatggcggcgcctgccgatgcaccgggcggatccgcggacg 250 Query: 225 cgttcgaggtgatccgcgctcaccaggt 252 |||||||||||||||||||||||||||| Sbjct: 251 cgttcgaggtgatccgcgctcaccaggt 278 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 15 cgccgtcaacgctctcgcgactgctccgcc 44 ||||||||||||||||||| |||||||||| Sbjct: 50 cgccgtcaacgctctcgcggctgctccgcc 79
>ref|NM_180178.1| Arabidopsis thaliana unknown protein AT3G03890 transcript variant AT3G03890.2 mRNA, complete cds Length = 1223 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 358 gggttatccttcagggtcaatggttgattttgc 390
>ref|NM_111260.3| Arabidopsis thaliana unknown protein AT3G03890 transcript variant AT3G03890.1 mRNA, complete cds Length = 1654 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 809 gggttatccttcagggtcaatggttgattttgc 841
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 15951 gggttatccttcagggtcaatggttgattttgc 15983
>gb|AC008620.12| Homo sapiens chromosome 5 clone CTB-14A14, complete sequence Length = 124713 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 cctcgcctcctcctcgccttctcag 184 |||| |||||||||||||||||||| Sbjct: 70907 cctcacctcctcctcgccttctcag 70931
>gb|AY052741.1| Arabidopsis thaliana AT3g03890/F20H23_6 mRNA, complete cds Length = 918 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 321 gggttatccttcagggtcaatggttgattttgc 353
>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence Length = 174487 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gaggacagaacagatactgta 505 ||||||||||||||||||||| Sbjct: 128759 gaggacagaacagatactgta 128739
>gb|AF378894.1|AF378894 Arabidopsis thaliana AT3g03890/F20H23_6 mRNA, complete cds Length = 1220 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 357 gggttatccttcagggtcaatggttgattttgc 389
>emb|BX822131.1|CNS0A73M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1589 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 809 gggttatccttcagggtcaatggttgattttgc 841
>emb|BX842171.1|CNS09YEM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1096 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 326 gggttatccttcagggtcaatggttgattttgc 358
>gb|AY085802.1| Arabidopsis thaliana clone 18355 mRNA, complete sequence Length = 1194 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 346 gggttatccatctggttcaatggttgattttgc 378 ||||||||| || || ||||||||||||||||| Sbjct: 352 gggttatccttcagggtcaatggttgattttgc 384
>ref|NM_206933.1| Homo sapiens Usher syndrome 2A (autosomal recessive, mild) (USH2A), transcript variant 2, mRNA Length = 18883 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ggagacaccctgaggccttt 595 |||||||||||||||||||| Sbjct: 12172 ggagacaccctgaggccttt 12191
>ref|XM_514197.1| PREDICTED: Pan troglodytes similar to usherin isoform B (LOC457736), mRNA Length = 7314 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ggagacaccctgaggccttt 595 |||||||||||||||||||| Sbjct: 3193 ggagacaccctgaggccttt 3212
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 ccgcagcagtggccgcctcggcgatcgc 157 ||||||||| ||| |||||||||||||| Sbjct: 760420 ccgcagcagcggcggcctcggcgatcgc 760393
>gb|AY481573.1| Homo sapiens Usher syndrome 2A isoform B (USH2A) mRNA, complete cds Length = 18883 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ggagacaccctgaggccttt 595 |||||||||||||||||||| Sbjct: 12172 ggagacaccctgaggccttt 12191
>gb|AC124451.4| Mus musculus BAC clone RP24-218I3 from chromosome 9, complete sequence Length = 168315 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ctcctcctcgccttctcaga 185 |||||||||||||||||||| Sbjct: 131421 ctcctcctcgccttctcaga 131402
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 cagcagtggccgcctcggcgatcg 156 |||||||||| ||||||||||||| Sbjct: 133313 cagcagtggcggcctcggcgatcg 133336
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caaaaccgccatgctcacgc 75 |||||||||||||||||||| Sbjct: 2360179 caaaaccgccatgctcacgc 2360160
>emb|AL139147.7| Human DNA sequence from clone RP4-598P13 on chromosome 1 Contains part of a novel gene (DKFZp761D221), complete sequence Length = 97455 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 agatgccgtaagaactgcatattt 573 ||||||| |||||||||||||||| Sbjct: 91223 agatgccataagaactgcatattt 91200
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 ccgcagcagtggccgcctcggcgatcgc 157 ||||||||| ||| |||||||||||||| Sbjct: 74174 ccgcagcagcggcggcctcggcgatcgc 74147
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 ccgcagcagtggccgcctcggcgatcgc 157 ||||||||| ||| |||||||||||||| Sbjct: 93216 ccgcagcagcggcggcctcggcgatcgc 93189
>emb|AL583926.1|MLEPRTN10 Mycobacterium leprae strain TN complete genome; segment 10/10 Length = 269203 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggccgcctcggcgatcgctt 159 |||||||||||||||||||| Sbjct: 25381 ggccgcctcggcgatcgctt 25362
>gb|AE005962.1| Caulobacter crescentus CB15 section 288 of 359 of the complete genome Length = 10708 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gccgcctcggcgatcgcttc 160 |||||||||||||||||||| Sbjct: 7366 gccgcctcggcgatcgcttc 7347
>gb|AY773022.1| Uncultured bacterium clone fg1L583 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (cbbL) gene, partial cds Length = 809 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccgcctcggcgatcgcttcc 161 |||||||||||||||||||| Sbjct: 94 ccgcctcggcgatcgcttcc 75
>gb|L78819.1|MSGB912CS Mycobacterium leprae cosmid B912 DNA sequence Length = 44448 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggccgcctcggcgatcgctt 159 |||||||||||||||||||| Sbjct: 37215 ggccgcctcggcgatcgctt 37234
>gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, complete sequence Length = 162115 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ggagacaccctgaggccttt 595 |||||||||||||||||||| Sbjct: 37527 ggagacaccctgaggccttt 37546
>gb|AC120137.16| Mus musculus chromosome 5, clone RP23-280O16, complete sequence Length = 181464 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 atcaagatggttcccccata 403 |||||||||||||||||||| Sbjct: 60390 atcaagatggttcccccata 60371
>gb|AC002981.1|AC002981 Homo sapiens Xp22 BAC GS279A12 (Genome Systems) complete sequence Length = 153568 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 atccagaggacagaacagat 499 |||||||||||||||||||| Sbjct: 133795 atccagaggacagaacagat 133814 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,075,623 Number of Sequences: 3902068 Number of extensions: 4075623 Number of successful extensions: 71437 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71233 Number of HSP's gapped (non-prelim): 204 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
