| Clone Name | baal32k08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY847708.1| Triticum aestivum tousled-like protein kinase (TLK1) mRNA, complete cds Length = 2538 Score = 222 bits (112), Expect = 1e-54 Identities = 127/132 (96%) Strand = Plus / Plus Query: 289 ggccgcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaa 348 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 61 ggccgcgggggaggacatagtgcagcacctctcgtcgaattccaacccgtcctcgtccaa 120 Query: 349 gctcgccaagatcgaggcgcgcatggccggcaaggccgtctgggtgccgcccccgtcgcc 408 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 121 gctcgccaagctcgaggcgcgcatggccggcaaggccgtctcggtgccgcccccgtcgcc 180 Query: 409 accgcaccaccc 420 ||||||||||| Sbjct: 181 gccgcaccaccc 192
>ref|XM_465595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1956 Score = 182 bits (92), Expect = 1e-42 Identities = 190/222 (85%), Gaps = 3/222 (1%) Strand = Plus / Plus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 351 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 407 Query: 67 ctcggcggcaatgccctcccctacgagaccgggctctacttcacgcagattgggattggc 126 |||||||||| | |||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct: 408 ctcggcggcagcggcctcgccaccgagaccgggctctacttcacgcggattgggatcggc 467 Query: 127 acaccggccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtcaac 186 || ||||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct: 468 acgccggcgaagcgctactacgtgcaggtggacaccggcagcgacatcctctgggtcaac 527 Query: 187 tgcgtcttctgcgacacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 528 tgcgtctcctgcgacggctgcccgcgcaagagcaacctcggg 569
>ref|XM_465597.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1448 Score = 182 bits (92), Expect = 1e-42 Identities = 190/222 (85%), Gaps = 3/222 (1%) Strand = Plus / Plus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 349 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 405 Query: 67 ctcggcggcaatgccctcccctacgagaccgggctctacttcacgcagattgggattggc 126 |||||||||| | |||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct: 406 ctcggcggcagcggcctcgccaccgagaccgggctctacttcacgcggattgggatcggc 465 Query: 127 acaccggccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtcaac 186 || ||||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct: 466 acgccggcgaagcgctactacgtgcaggtggacaccggcagcgacatcctctgggtcaac 525 Query: 187 tgcgtcttctgcgacacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 526 tgcgtctcctgcgacggctgcccgcgcaagagcaacctcggg 567
>dbj|AK109641.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E12, full insert sequence Length = 1446 Score = 182 bits (92), Expect = 1e-42 Identities = 190/222 (85%), Gaps = 3/222 (1%) Strand = Plus / Plus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 349 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 405 Query: 67 ctcggcggcaatgccctcccctacgagaccgggctctacttcacgcagattgggattggc 126 |||||||||| | |||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct: 406 ctcggcggcagcggcctcgccaccgagaccgggctctacttcacgcggattgggatcggc 465 Query: 127 acaccggccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtcaac 186 || ||||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct: 466 acgccggcgaagcgctactacgtgcaggtggacaccggcagcgacatcctctgggtcaac 525 Query: 187 tgcgtcttctgcgacacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 526 tgcgtctcctgcgacggctgcccgcgcaagagcaacctcggg 567
>dbj|AK101185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029J01, full insert sequence Length = 1956 Score = 174 bits (88), Expect = 2e-40 Identities = 189/222 (85%), Gaps = 3/222 (1%) Strand = Plus / Plus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 351 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 407 Query: 67 ctcggcggcaatgccctcccctacgagaccgggctctacttcacgcagattgggattggc 126 |||||||||| | |||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct: 408 ctcggcggcagcggcctcgccaccgagaccgggctctacttcacgcggattgggatcggc 467 Query: 127 acaccggccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtcaac 186 || ||||| ||| ||||||||||||||||||||||| |||| || || ||||||||||| Sbjct: 468 acgccggcgaagcgctactacgtgcaggtggacaccggcagagacatcctctgggtcaac 527 Query: 187 tgcgtcttctgcgacacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 528 tgcgtctcctgcgacggctgcccgcgcaagagcaacctcggg 569
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 98 ggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcaggtgg 157 ||||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||| Sbjct: 16219681 ggctctacttcacgcggattgggatcggcacgccggcgaagcgctactacgtgcaggtgg 16219622 Query: 158 acaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgcaaga 217 ||||| ||||||| || |||||||||||||||||| ||||||| |||||| ||||||| Sbjct: 16219621 acaccggcagcgacatcctctgggtcaactgcgtctcctgcgacggctgcccgcgcaaga 16219562 Query: 218 gcggcctcggggt 230 || ||||||||| Sbjct: 16219561 gcaacctcggggt 16219549 Score = 48.1 bits (24), Expect = 0.038 Identities = 59/70 (84%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 16219871 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 16219815 Query: 67 ctcggcggca 76 |||||||||| Sbjct: 16219814 ctcggcggca 16219805
>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487H05 Length = 176057 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 98 ggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcaggtgg 157 ||||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||| Sbjct: 54168 ggctctacttcacgcggattgggatcggcacgccggcgaagcgctactacgtgcaggtgg 54109 Query: 158 acaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgcaaga 217 ||||| ||||||| || |||||||||||||||||| ||||||| |||||| ||||||| Sbjct: 54108 acaccggcagcgacatcctctgggtcaactgcgtctcctgcgacggctgcccgcgcaaga 54049 Query: 218 gcggcctcggggt 230 || ||||||||| Sbjct: 54048 gcaacctcggggt 54036 Score = 48.1 bits (24), Expect = 0.038 Identities = 59/70 (84%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 54358 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 54302 Query: 67 ctcggcggca 76 |||||||||| Sbjct: 54301 ctcggcggca 54292
>dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0046H03 Length = 137020 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 98 ggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcaggtgg 157 ||||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||| Sbjct: 112010 ggctctacttcacgcggattgggatcggcacgccggcgaagcgctactacgtgcaggtgg 111951 Query: 158 acaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgcaaga 217 ||||| ||||||| || |||||||||||||||||| ||||||| |||||| ||||||| Sbjct: 111950 acaccggcagcgacatcctctgggtcaactgcgtctcctgcgacggctgcccgcgcaaga 111891 Query: 218 gcggcctcggggt 230 || ||||||||| Sbjct: 111890 gcaacctcggggt 111878 Score = 48.1 bits (24), Expect = 0.038 Identities = 59/70 (84%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 7 ctccgggcgcatgacgctcgccgccacggccgctcccttgccgccgccgtcgacctgccc 66 ||||||| ||| |||| ||||||||||||||| ||| ||||||| ||||||| ||| Sbjct: 112200 ctccgggagcacgacggacgccgccacggccgcctcct---cgccgccatcgacctcccc 112144 Query: 67 ctcggcggca 76 |||||||||| Sbjct: 112143 ctcggcggca 112134
>ref|XM_469761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 723 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 19 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 78 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 79 gccaagctggaggcacggatggctggcaaggccg 112
>ref|XM_469759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2196 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 19 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 78 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 79 gccaagctggaggcacggatggctggcaaggccg 112
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 30606949 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 30606890 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 30606889 gccaagctggaggcacggatggctggcaaggccg 30606856
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 155443 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 155502 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 155503 gccaagctggaggcacggatggctggcaaggccg 155536
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 138522 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 138463 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 138462 gccaagctggaggcacggatggctggcaaggccg 138429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 30698371 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 30698312 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 30698311 gccaagctggaggcacggatggctggcaaggccg 30698278
>dbj|AK111770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067A13, full insert sequence Length = 2093 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 500 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 559 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 560 gccaagctggaggcacggatggctggcaaggccg 593
>dbj|AK111604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L24, full insert sequence Length = 2685 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 293 gcgggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctc 352 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 430 gcgggggaggatatagtgcagcacctctcgtctaattccaacccgtcctcgtccaagctc 489 Query: 353 gccaagatcgaggcgcgcatggccggcaaggccg 386 |||||| | ||||| || ||||| |||||||||| Sbjct: 490 gccaagctggaggcacggatggctggcaaggccg 523
>gb|AY496080.1| Zea mays tousled-like kinase 2 (TLK2) mRNA, complete cds Length = 2729 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 296 ggggaggacatagtgcagcacctctcgtccaactccaacccgtcctcgtccaagctcgcc 355 ||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 438 ggggaggacatagtgcagcacctatcgtccaattctaacccgtcttcgtcgaagctcgcg 497 Query: 356 aagatcgaggcgcgcatggccggcaaggccgtct 389 ||| ||||||| ||||||||||||||||| |||| Sbjct: 498 aagctcgaggcacgcatggccggcaaggctgtct 531
>ref|XM_471937.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1485 Score = 97.6 bits (49), Expect = 5e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 64 cccctcggcggcaatgccctcccctacgagaccgggctctacttcacgcagattgggatt 123 |||||||||||| | ||||||| ||| |||||||| |||| |||| |||| ||||| Sbjct: 226 cccctcggcggcctcggcctccccaccgacaccgggctgtactacacggagatcgggatc 285 Query: 124 ggcacaccggccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtc 183 || || ||| ||||| | ||||||||||||||||||||| ||||||| || ||||||| Sbjct: 286 gggacgccgaccaagcggtactacgtgcaggtggacaccggcagcgacatcctctgggtg 345 Query: 184 aactgcgtcttctgcgacacctgcccccgcaagagcggcctcggg 228 |||||| ||| |||||| ||||| |||||||||||||||||| Sbjct: 346 aactgcatctcctgcgatcgatgcccacgcaagagcggcctcggg 390
>dbj|AK066236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057F13, full insert sequence Length = 4559 Score = 93.7 bits (47), Expect = 7e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 94 accgggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcag 153 |||||||| |||| |||| |||| ||||| || || ||| ||||| | |||||||||||| Sbjct: 90 accgggctgtactacacggagatcgggatcgggacgccgaccaagcggtactacgtgcag 149 Query: 154 gtggacaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgc 213 ||||||||| ||||||| || ||||||| |||||| ||| |||||| ||||| ||| Sbjct: 150 gtggacaccggcagcgacatcctctgggtgaactgcatctcctgcgatcgatgcccacgc 209 Query: 214 aagagcggcctcggg 228 ||||||||||||||| Sbjct: 210 aagagcggcctcggg 224
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence Length = 130521 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 98 ggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcaggtgg 157 |||| |||| |||| |||| ||||| || || ||| ||||| | |||||||||||||||| Sbjct: 53184 ggctgtactacacggagatcgggatcgggacgccgaccaagcggtactacgtgcaggtgg 53125 Query: 158 acaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgcaaga 217 ||||| ||||||| || ||||||| |||||| ||| |||||| ||||| ||||||| Sbjct: 53124 acaccggcagcgacatcctctgggtgaactgcatctcctgcgatcgatgcccacgcaaga 53065 Query: 218 gcggcctcggggta 231 |||||||||||||| Sbjct: 53064 gcggcctcggggta 53051
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 98 ggctctacttcacgcagattgggattggcacaccggccaagagctactacgtgcaggtgg 157 |||| |||| |||| |||| ||||| || || ||| ||||| | |||||||||||||||| Sbjct: 15866619 ggctgtactacacggagatcgggatcgggacgccgaccaagcggtactacgtgcaggtgg 15866560 Query: 158 acaccagcagcgatatattctgggtcaactgcgtcttctgcgacacctgcccccgcaaga 217 ||||| ||||||| || ||||||| |||||| ||| |||||| ||||| ||||||| Sbjct: 15866559 acaccggcagcgacatcctctgggtgaactgcatctcctgcgatcgatgcccacgcaaga 15866500 Query: 218 gcggcctcggggta 231 |||||||||||||| Sbjct: 15866499 gcggcctcggggta 15866486
>gb|BT024018.1| Zea mays clone EL01N0561H01 mRNA sequence Length = 1640 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 134 ccaagagctactacgtgcaggtggacaccagcagcgatatattctgggtcaactgcgtct 193 ||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||| || Sbjct: 344 ccaagggctactacgtgcaggtggacaccggcagtgatatcctctgggtcaactgcatcc 403 Query: 194 tctgcgacacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||| || ||||||||||||| Sbjct: 404 gctgcgacggctgccccaccaggagcggcctcggg 438
>gb|BT018601.1| Zea mays clone EL01N0449D04.d mRNA sequence Length = 1634 Score = 56.0 bits (28), Expect = 2e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 141 ctactacgtgcaggtggacaccagcagcgatatattctgggtcaactgcgtcttctgcga 200 ||||||||| ||||| |||||| ||||||| || |||||||||||||| || |||||| Sbjct: 41 ctactacgtccaggtcgacaccggcagcgacatcctctgggtcaactgcatcacctgcga 100 Query: 201 cacctgcccccgcaagagcggcctcggg 228 ||||||| ||||||||| |||||| Sbjct: 101 gcaatgcccccacaagagcgggctcggg 128
>ref|NM_191038.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2316 Score = 50.1 bits (25), Expect = 0.010 Identities = 79/97 (81%) Strand = Plus / Plus Query: 448 tttgggctccatatcggtgtcagtttctgggaggcggtgaacttgacaaatatgcatcca 507 ||||| |||||||||||||||| |||||| | |||| ||||||||||| | ||||| Sbjct: 406 tttggactccatatcggtgtcaacttctggacgacggtaaacttgacaaagtgggatcca 465 Query: 508 tcaagcaccatatggaaggaagtgctcaccgttgctc 544 || ||||| ||||||| || ||| |||| ||||||| Sbjct: 466 tcgagcacggtatggaaagaggtgatcacggttgctc 502
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Plus Query: 353 gccaagatcgaggcgcgcatggccg 377 ||||||||||||||||||||||||| Sbjct: 378130 gccaagatcgaggcgcgcatggccg 378154
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.010 Identities = 79/97 (81%) Strand = Plus / Minus Query: 448 tttgggctccatatcggtgtcagtttctgggaggcggtgaacttgacaaatatgcatcca 507 ||||| |||||||||||||||| |||||| | |||| ||||||||||| | ||||| Sbjct: 34446893 tttggactccatatcggtgtcaacttctggacgacggtaaacttgacaaagtgggatcca 34446834 Query: 508 tcaagcaccatatggaaggaagtgctcaccgttgctc 544 || ||||| ||||||| || ||| |||| ||||||| Sbjct: 34446833 tcgagcacggtatggaaagaggtgatcacggttgctc 34446797
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 50.1 bits (25), Expect = 0.010 Identities = 79/97 (81%) Strand = Plus / Minus Query: 448 tttgggctccatatcggtgtcagtttctgggaggcggtgaacttgacaaatatgcatcca 507 ||||| |||||||||||||||| |||||| | |||| ||||||||||| | ||||| Sbjct: 129237 tttggactccatatcggtgtcaacttctggacgacggtaaacttgacaaagtgggatcca 129178 Query: 508 tcaagcaccatatggaaggaagtgctcaccgttgctc 544 || ||||| ||||||| || ||| |||| ||||||| Sbjct: 129177 tcgagcacggtatggaaagaggtgatcacggttgctc 129141
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 50.1 bits (25), Expect = 0.010 Identities = 79/97 (81%) Strand = Plus / Minus Query: 448 tttgggctccatatcggtgtcagtttctgggaggcggtgaacttgacaaatatgcatcca 507 ||||| |||||||||||||||| |||||| | |||| ||||||||||| | ||||| Sbjct: 22612 tttggactccatatcggtgtcaacttctggacgacggtaaacttgacaaagtgggatcca 22553 Query: 508 tcaagcaccatatggaaggaagtgctcaccgttgctc 544 || ||||| ||||||| || ||| |||| ||||||| Sbjct: 22552 tcgagcacggtatggaaagaggtgatcacggttgctc 22516
>ref|NM_001030681.1| Gallus gallus BTB (POZ) domain containing 14A (BTBD14A), mRNA Length = 2100 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 cggccgctcccttgccgccgccgtcg 58 ||||||||||||| |||||||||||| Sbjct: 2 cggccgctcccttcccgccgccgtcg 27
>emb|AJ720914.1| Gallus gallus mRNA for hypothetical protein, clone 29m3 Length = 2100 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 cggccgctcccttgccgccgccgtcg 58 ||||||||||||| |||||||||||| Sbjct: 2 cggccgctcccttcccgccgccgtcg 27
>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence Length = 203811 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 actgcgtcttctgcgacacctgccc 209 |||||| |||||||||||||||||| Sbjct: 57517 actgcggcttctgcgacacctgccc 57541
>gb|AY389616.1| Hyacinthus orientalis pollen-specific protein mRNA, partial cds Length = 792 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gcgtcttctgcgacacctgcc 208 ||||||||||||||||||||| Sbjct: 140 gcgtcttctgcgacacctgcc 160
>ref|XM_952948.1| Neurospora crassa OR74A hypothetical protein (NCU09843.1) partial mRNA Length = 1671 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 cctcgtccaagctcgccaagatcga 363 |||| |||||||||||||||||||| Sbjct: 1103 cctcttccaagctcgccaagatcga 1127
>ref|XM_330764.1| Neurospora crassa OR74A hypothetical protein (NCU09843.1) partial mRNA Length = 1671 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 cctcgtccaagctcgccaagatcga 363 |||| |||||||||||||||||||| Sbjct: 1103 cctcttccaagctcgccaagatcga 1127
>emb|AL035407.15|HS419C19 Human DNA sequence from clone RP3-419C19 on chromosome 1q31 Contains the RGS2 gene for regulator of G-protein signalling 2, 24kDa, an unprocessed pseudogene similar to a hypothetical protein (FLJ10996), a processed pseudogene similar to integrin beta 1 binding protein 1 (ITGB1BP1) and a CpG island, complete sequence Length = 111079 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 taccaaataaagtcacccagt 445 ||||||||||||||||||||| Sbjct: 27281 taccaaataaagtcacccagt 27261
>gb|BC042755.1| Homo sapiens regulator of G-protein signalling 2, 24kDa, mRNA (cDNA clone IMAGE:4830785), complete cds Length = 3288 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 taccaaataaagtcacccagt 445 ||||||||||||||||||||| Sbjct: 1054 taccaaataaagtcacccagt 1034
>gb|BC044742.1| Homo sapiens regulator of G-protein signalling 2, 24kDa, mRNA (cDNA clone IMAGE:4829698) Length = 3288 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 taccaaataaagtcacccagt 445 ||||||||||||||||||||| Sbjct: 1054 taccaaataaagtcacccagt 1034
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ccgccgtcgacctgcccctcg 70 ||||||||||||||||||||| Sbjct: 1830222 ccgccgtcgacctgcccctcg 1830242
>gb|L13391.1|HUMG0S8PP Human helix-loop-helix basic phosphoprotein (G0S8) gene, complete cds Length = 7345 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 taccaaataaagtcacccagt 445 ||||||||||||||||||||| Sbjct: 3592 taccaaataaagtcacccagt 3572
>ref|XM_482340.1| Oryza sativa (japonica cultivar-group), mRNA Length = 285 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 cgctcgccgccacggccgctccct 44 ||||||||||||||||||| |||| Sbjct: 26 cgctcgccgccacggccgcaccct 49
>ref|XM_450521.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1523 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gccgccgccgtcgacctgcc 65 |||||||||||||||||||| Sbjct: 858 gccgccgccgtcgacctgcc 877
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttgccgccgccgtcgacc 61 |||||||||||||||||||| Sbjct: 87437 ccttgccgccgccgtcgacc 87456
>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome Length = 152261 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 gccgctcccttgccgccgccgtcg 58 ||||| |||||||||||||||||| Sbjct: 61134 gccgcgcccttgccgccgccgtcg 61157
>ref|XM_809771.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503697.120) partial mRNA Length = 1725 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gtgccgcccccgtcgccacc 411 |||||||||||||||||||| Sbjct: 613 gtgccgcccccgtcgccacc 632
>ref|XM_814611.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504105.180) partial mRNA Length = 1725 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gtgccgcccccgtcgccacc 411 |||||||||||||||||||| Sbjct: 613 gtgccgcccccgtcgccacc 632
>gb|AY358712.1| Homo sapiens clone DNA77626 ARPG836 (UNQ836) mRNA, complete cds Length = 1505 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 48 cggccgctctcctgccgccgccgccgacctgc 17
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ggcacaccggccaagagctactac 147 |||||||||||||||| ||||||| Sbjct: 1966519 ggcacaccggccaagatctactac 1966542
>gb|AC110594.5| Homo sapiens chromosome 17, clone CTD-2193J24, complete sequence Length = 159490 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 142587 cggccgctctcctgccgccgccgccgacctgc 142556
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cccttgccgccgccgtcgac 60 |||||||||||||||||||| Sbjct: 272241 cccttgccgccgccgtcgac 272222
>emb|X03181.1|HEHSV1PO Herpes simplex virus type 1 (HSV-1) dbp/pol genes Length = 8400 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 gccgctcccttgccgccgccgtcg 58 ||||| |||||||||||||||||| Sbjct: 2873 gccgcgcccttgccgccgccgtcg 2896
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gccgctcccttgccgccgcc 54 |||||||||||||||||||| Sbjct: 890 gccgctcccttgccgccgcc 909
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gccgctcccttgccgccgcc 54 |||||||||||||||||||| Sbjct: 148403 gccgctcccttgccgccgcc 148422
>gb|AF137259.1| Psettodes sp. IMCB-2002 mixed lineage leukemia-like protein (Mll) gene, partial cds Length = 886 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ccgtcgacctgcccctcggc 72 |||||||||||||||||||| Sbjct: 158 ccgtcgacctgcccctcggc 139
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttgccgccgccgtcgacc 61 |||||||||||||||||||| Sbjct: 18984239 ccttgccgccgccgtcgacc 18984258
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gccgccgccgtcgacctgcc 65 |||||||||||||||||||| Sbjct: 9449353 gccgccgccgtcgacctgcc 9449372
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cgctcgccgccacggccgctccct 44 ||||||||||||||||||| |||| Sbjct: 19529606 cgctcgccgccacggccgcaccct 19529583
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcggcaatgccctcccct 88 |||||||||||||||||||| Sbjct: 13716796 cggcggcaatgccctcccct 13716777
>ref|NM_024308.2| Homo sapiens short-chain dehydrogenase/reductase (MGC4172), mRNA Length = 1501 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 37 cggccgctctcctgccgccgccgccgacctgc 6
>gb|AF057145.1|AF057145 Homo sapiens serine protease TADG15 mRNA, complete cds Length = 3147 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 caagagcggcctcggggtac 232 |||||||||||||||||||| Sbjct: 2 caagagcggcctcggggtac 21
>dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete sequence Length = 36955 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gccgccgccgtcgacctgcc 65 |||||||||||||||||||| Sbjct: 29195 gccgccgccgtcgacctgcc 29176
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcggcaatgccctcccct 88 |||||||||||||||||||| Sbjct: 124129 cggcggcaatgccctcccct 124110
>dbj|AP005593.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0692F07 Length = 141544 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gccgccgccgtcgacctgcc 65 |||||||||||||||||||| Sbjct: 12989 gccgccgccgtcgacctgcc 13008
>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete sequence Length = 219412 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 actccatgtcagtctgtgtg 570 |||||||||||||||||||| Sbjct: 49600 actccatgtcagtctgtgtg 49581
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cgctcgccgccacggccgctccct 44 ||||||||||||||||||| |||| Sbjct: 5166 cgctcgccgccacggccgcaccct 5143
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cgctcgccgccacggccgctccct 44 ||||||||||||||||||| |||| Sbjct: 124363 cgctcgccgccacggccgcaccct 124340
>gb|BC002731.2| Homo sapiens short-chain dehydrogenase/reductase, mRNA (cDNA clone MGC:4172 IMAGE:3631177), complete cds Length = 1501 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 37 cggccgctctcctgccgccgccgccgacctgc 6
>dbj|AK026196.1| Homo sapiens cDNA: FLJ22543 fis, clone HSI00212 Length = 1410 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 113 cggccgctctcctgccgccgccgccgacctgc 82
>dbj|AK109691.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E06, full insert sequence Length = 1523 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gccgccgccgtcgacctgcc 65 |||||||||||||||||||| Sbjct: 858 gccgccgccgtcgacctgcc 877
>dbj|AK072950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146L07, full insert sequence Length = 2099 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttgccgccgccgtcgacc 61 |||||||||||||||||||| Sbjct: 103 ccttgccgccgccgtcgacc 122
>gb|AY104228.1| Zea mays PCO128134 mRNA sequence Length = 797 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 ctcccttgccgccgccgtcg 58 |||||||||||||||||||| Sbjct: 182 ctcccttgccgccgccgtcg 163
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccttgccgccgccgtcgacc 61 |||||||||||||||||||| Sbjct: 19142888 ccttgccgccgccgtcgacc 19142907
>gb|AC003042.1|AC003042 Homo sapiens chromosome 17, clone HCIT75G16, complete sequence Length = 102818 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 33 cggccgctcccttgccgccgccgtcgacctgc 64 ||||||||| | ||||||||||| |||||||| Sbjct: 57004 cggccgctctcctgccgccgccgccgacctgc 57035
>gb|M21629.1|HS1GLYB Herpes simplex virus type 1 glycoprotein B gene (gB-1), complete cds Length = 9756 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 gccgctcccttgccgccgccgtcg 58 ||||| |||||||||||||||||| Sbjct: 1216 gccgcgcccttgccgccgccgtcg 1193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,430,602 Number of Sequences: 3902068 Number of extensions: 4430602 Number of successful extensions: 83844 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82778 Number of HSP's gapped (non-prelim): 1055 length of query: 671 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 648 effective length of database: 17,143,297,704 effective search space: 11108856912192 effective search space used: 11108856912192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)