ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal32j06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019230.1| Zea mays clone Contig903.F mRNA sequence Length = 727 Score = 232 bits (117), Expect = 5e-58 Identities = 255/301 (84%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| ||||| Sbjct: 427 tggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgttct 486 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 ||||||| ||||||| |||||||||| |||||||| || |||||| ||||||| |||| Sbjct: 487 gcaaacggtatggcctgtgcagggacacggctcttctctccggtgtgggaagtgacagca 546 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 | || ||||| |||||||| || | |||||| | ||||||||||||||||||| |||| Sbjct: 547 cgtgtgtgttctgccaccatctgctcgatgaaatcatgtccaaactgaaagatccagatg 606 Query: 192 ctgagtttgagataattcaaattcttctcaaggagtgcaaaaagatcgaaggtcacgagc 251 | ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | Sbjct: 607 cggagtttgagataattcagattcttgtcaaggagtgcaataagatcgaaggtcacgtcc 666 Query: 252 aacagtgcaaacgattggtcctgcaatacatccctctcatcctggtcaacggagagaagt 311 | |||||||| | |||| ||||||||||| || |||||| |||| ||||| ||||||| Sbjct: 667 agcagtgcaagaggctggttctgcaatacattcccctcatcttggtgaacggtgagaagt 726 Query: 312 t 312 | Sbjct: 727 t 727
>gb|AY103886.1| Zea mays PCO129988 mRNA sequence Length = 2158 Score = 208 bits (105), Expect = 8e-51 Identities = 204/237 (86%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| ||||| Sbjct: 703 tggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgttct 762 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 ||||||| ||||||| |||||||||| |||||||| || |||||| ||||||| |||| Sbjct: 763 gcaaacggtatggcctgtgcagggacacggctcttctctccggtgtgggaagtgacagca 822 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 | || ||||| |||||||| || | |||||| | ||||||||||||||||||| |||| Sbjct: 823 cgtgtgtgttctgccaccatctgctcgatgaaatcatgtccaaactgaaagatccagatg 882 Query: 192 ctgagtttgagataattcaaattcttctcaaggagtgcaaaaagatcgaaggtcacg 248 | ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct: 883 cggagtttgagataattcagattcttgtcaaggagtgcaataagatcgaaggtcacg 939
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 153 bits (77), Expect = 4e-34 Identities = 155/181 (85%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | | ||| |||||| |||| Sbjct: 629202 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 629261 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||||| || ||||||||| |||| |||||| || |||||||||||||||||||||||| Sbjct: 629262 catgcgtattctgccaccacatcatcgatgaaattatgtccaaactgaaagatcctgatg 629321 Query: 192 c 192 | Sbjct: 629322 c 629322
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 153 bits (77), Expect = 4e-34 Identities = 155/181 (85%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | | ||| |||||| |||| Sbjct: 629202 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 629261 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||||| || ||||||||| |||| |||||| || |||||||||||||||||||||||| Sbjct: 629262 catgcgtattctgccaccacatcatcgatgaaattatgtccaaactgaaagatcctgatg 629321 Query: 192 c 192 | Sbjct: 629322 c 629322
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 153 bits (77), Expect = 4e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 19701 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 19642 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | | ||| |||||| |||| Sbjct: 19641 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 19582 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||||| || ||||||||| |||| |||||| || |||||||||||||||||||||||| Sbjct: 19581 catgcgtattctgccaccacatcatcgatgaaattatgtccaaactgaaagatcctgatg 19522 Query: 192 c 192 | Sbjct: 19521 c 19521
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 1e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | ||| | |||||| |||| Sbjct: 592913 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 592972 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||| | || ||||||||| |||| |||||| || ||||||||||||||||||||||| Sbjct: 592973 catgcttattctgccaccacatcatcgatgaaattacgtccaaactgaaagatcctgatg 593032 Query: 192 c 192 | Sbjct: 593033 c 593033
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 1e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | ||| | |||||| |||| Sbjct: 592913 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 592972 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||| | || ||||||||| |||| |||||| || ||||||||||||||||||||||| Sbjct: 592973 catgcttattctgccaccacatcatcgatgaaattacgtccaaactgaaagatcctgatg 593032 Query: 192 c 192 | Sbjct: 593033 c 593033
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 121 bits (61), Expect = 1e-24 Identities = 151/181 (83%) Strand = Plus / Minus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 71 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 150119 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 150060 Query: 72 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagtgagagca 131 |||||| |||||||||||||||||| |||||| | || | ||| | |||||| |||| Sbjct: 150059 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 150000 Query: 132 catgcgtgttttgccaccacctcatggatgaagttttgtccaaactgaaagatcctgatg 191 ||||| | || ||||||||| |||| |||||| || ||||||||||||||||||||||| Sbjct: 149999 catgcttattctgccaccacatcatcgatgaaattacgtccaaactgaaagatcctgatg 149940 Query: 192 c 192 | Sbjct: 149939 c 149939
>dbj|AK120247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044M10, full insert sequence Length = 1025 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 12 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccag 62 ||||||||||||||||||| | ||||| || || || ||||||||||||| Sbjct: 601 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccag 651
>gb|AC182738.1| Gasterosteus aculeatus clone VMRC26-26C14, complete sequence Length = 168680 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 caccacctcatggatgaagttt 167 |||||||||||||||||||||| Sbjct: 25917 caccacctcatggatgaagttt 25896
>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence Length = 197718 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 atacatccctctcatcctggt 297 ||||||||||||||||||||| Sbjct: 124450 atacatccctctcatcctggt 124470
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 gccaagatcgcggagatcaag 58 ||||||||||||||||||||| Sbjct: 436707 gccaagatcgcggagatcaag 436727
>ref|XM_388289.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08113.1) partial mRNA Length = 5241 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 tcctgatgctgagtttgagat 204 ||||||||||||||||||||| Sbjct: 462 tcctgatgctgagtttgagat 482
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gaaagatcctgatgctgagtt 198 ||||||||||||||||||||| Sbjct: 2337089 gaaagatcctgatgctgagtt 2337109
>gb|BC067327.1| Xenopus tropicalis nucleoporin 93kDa, mRNA (cDNA clone MGC:76268 IMAGE:5379233), complete cds Length = 2592 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggacaatgctcttctgtctg 113 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>gb|BC045089.1| Xenopus laevis dead eye-like, mRNA (cDNA clone MGC:53870 IMAGE:5543002), complete cds Length = 2639 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggacaatgctcttctgtctg 113 |||||||||||||||||||| Sbjct: 384 ggacaatgctcttctgtctg 403
>emb|AL357395.13| Human DNA sequence from clone RP11-31L23 on chromosome 10 Contains the TLX1 gene for T-cell leukemia homeobox 1, the 5' end of a novel gene, the C10orf1 gene for chromosome 10 open reading frame 1 and four CpG islands, complete sequence Length = 51099 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tgaaagatcctgatgctgag 196 |||||||||||||||||||| Sbjct: 4522 tgaaagatcctgatgctgag 4541
>ref|NM_213714.1| Xenopus tropicalis nucleoporin 93kDa (nup93), mRNA Length = 2592 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggacaatgctcttctgtctg 113 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>emb|AL589845.8| Mouse DNA sequence from clone RP23-246J2 on chromosome 4, complete sequence Length = 175287 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tttgagataattcaaattct 216 |||||||||||||||||||| Sbjct: 169240 tttgagataattcaaattct 169221
>gb|U63919.1|XLU63919 Xenopus laevis An4a mRNA, complete cds Length = 3112 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggacaatgctcttctgtctg 113 |||||||||||||||||||| Sbjct: 390 ggacaatgctcttctgtctg 409 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,086,442 Number of Sequences: 3902068 Number of extensions: 3086442 Number of successful extensions: 55298 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55206 Number of HSP's gapped (non-prelim): 92 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
