ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal32i16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009063.1| Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence Length = 1378 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaagga 71 ||||||||||| |||||||||||||| || || |||||||||||||| |||||||| Sbjct: 695 cacgcgatgcgccgggcgaggggcacgggagggcgcttcctcaacaccaagaagga 750
>gb|AY110209.1| Zea mays CL834_-1 mRNA sequence Length = 1242 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaa 65 ||||||||||| |||| ||| ||| ||||||| ||||||||||||||||| Sbjct: 394 cacgcgatgcgccgggtgagaggctccggcgggcgcttcctcaacacgaa 443
>ref|XM_476685.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| || ||| |||||| ||||||||||||||||||||| ||||| Sbjct: 766 cacgccatgcgccgcgcgcggggcagcggcggccgcttcctcaacaccaagaa 818
>gb|AY023473.1| Oryza sativa microsatellite MRG5798 containing (TCT)X8, genomic sequence Length = 224 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| || ||| |||||| ||||||||||||||||||||| ||||| Sbjct: 167 cacgccatgcgccgcgcgcggggcagcggcggccgcttcctcaacaccaagaa 219
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||| Sbjct: 18845 cacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaa 18793
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||| Sbjct: 24785149 cacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaa 24785097 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 27602776 ctgctgttttcaggcaattcattcttggctttc 27602808
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||| Sbjct: 70561 cacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaa 70509
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| || ||| |||||| ||||||||||||||||||||| ||||| Sbjct: 3160418 cacgccatgcgccgcgcgcggggcagcggcggccgcttcctcaacaccaagaa 3160366 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 ggacgagcacggcggcggcggag 91 ||||||||||||||||||||||| Sbjct: 23443327 ggacgagcacggcggcggcggag 23443349 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagc 92 |||||||||||||||||||| Sbjct: 5506942 gagcacggcggcggcggagc 5506961
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||| Sbjct: 24874933 cacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaa 24874881 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 27694099 ctgctgttttcaggcaattcattcttggctttc 27694131
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| || ||| |||||| ||||||||||||||||||||| ||||| Sbjct: 75408 cacgccatgcgccgcgcgcggggcagcggcggccgcttcctcaacaccaagaa 75356
>dbj|AK106398.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F12, full insert sequence Length = 2034 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggcaccggcggccgcttcctcaacacgaagaa 68 ||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||| Sbjct: 1228 cacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaa 1280
>ref|XM_469371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1358 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 1073 ctgctgttttcaggcaattcattcttggctttc 1105
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 44473 ctgctgttttcaggcaattcattcttggctttc 44505
>dbj|AK099549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033E22, full insert sequence Length = 643 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 449 ctgctgttttcaggcaattcattcttggctttc 481
>dbj|AK069854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036P10, full insert sequence Length = 1959 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 275 ctgctgtgtccaggcaattcattcttggctttc 307 ||||||| | ||||||||||||||||||||||| Sbjct: 1627 ctgctgttttcaggcaattcattcttggctttc 1659
>gb|AY632421.1| Streptomyces viridochromogenes PTT biosynthetic gene Length = 40241 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 212 ctggccgccggccgtcgtgccacg 235 |||||||||||||||||||||||| Sbjct: 22076 ctggccgccggccgtcgtgccacg 22099
>emb|X65195.2|SVPTT Streptomyces viridochromogenes strain Tue494 phosphinothricin tripeptide biosynthetic gene cluster: ORFB1, ORFB2, ORF1, phsB gene, ORFM, phsC gene, pmi gene, adhP gene, ORF3, pgdP gene, ppm gene, ppd gene, ORFx, pgmP gene, cpps gene, cppm gene, aldP gene, pmet gene, pms gene, phsA gene, pat gene, dea gene, the1 gene, the2 gene, trs gene, prpA gene, ORFE1, ORFE2 and ORFE3 (partial) Length = 37823 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 212 ctggccgccggccgtcgtgccacg 235 |||||||||||||||||||||||| Sbjct: 23678 ctggccgccggccgtcgtgccacg 23701
>gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 map 17, complete sequence Length = 203077 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 ggagccgaggcgggcaaaggcga 110 ||||||||||||||||||||||| Sbjct: 127182 ggagccgaggcgggcaaaggcga 127204
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 25 cggcgggcgaggggcaccggcggccgcttcc 55 ||||||||| ||||||||||||||| ||||| Sbjct: 4401757 cggcgggcgcggggcaccggcggcctcttcc 4401727
>dbj|AK013275.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810440H14 product:t-complex protein 1, related sequence 1, full insert sequence Length = 1746 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 88 ggagccgaggcgggcaaaggcga 110 ||||||||||||||||||||||| Sbjct: 88 ggagccgaggcgggcaaaggcga 66
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 30 ggcgaggggcaccggcggccgct 52 ||||||||||||||||||||||| Sbjct: 8078188 ggcgaggggcaccggcggccgct 8078210 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gcacggcggcggcggagccg 94 |||||||||||||||||||| Sbjct: 8913491 gcacggcggcggcggagccg 8913472
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 ggacgagcacggcggcggcggag 91 ||||||||||||||||||||||| Sbjct: 3720 ggacgagcacggcggcggcggag 3742
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 ggacgagcacggcggcggcggag 91 ||||||||||||||||||||||| Sbjct: 63224 ggacgagcacggcggcggcggag 63246
>emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chromosome 15, complete sequence Length = 203949 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 88 ggagccgaggcgggcaaaggcga 110 ||||||||||||||||||||||| Sbjct: 76416 ggagccgaggcgggcaaaggcga 76394
>gb|AF271636.1|AF271636 Zea mays lysine ketoglutarate reductase/saccharopine dehydrogenase (LKRSDH) gene, complete cds Length = 15146 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 cgtcgtgccacgtcgccacggc 245 |||||||||||||||||||||| Sbjct: 2431 cgtcgtgccacgtcgccacggc 2452
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 gcggcgggcgaggggcaccggc 45 |||||||||||||||||||||| Sbjct: 823740 gcggcgggcgaggggcaccggc 823761 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gacgagcacggcggcggcgg 89 |||||||||||||||||||| Sbjct: 4448021 gacgagcacggcggcggcgg 4448040
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagccg 94 |||||||||||||||||||||| Sbjct: 5327480 gagcacggcggcggcggagccg 5327501
>ref|NM_112983.2| Arabidopsis thaliana transcription factor AT3G20910 mRNA, complete cds Length = 1217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 1024 ggcaattcattcttggctttc 1044
>ref|NM_001035657.1| Arabidopsis thaliana protein transporter AT3G20920 transcript variant AT3G20920.2 mRNA, complete cds Length = 1776 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 1530 ggcaattcattcttggctttc 1510
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 gggatggatggcgtgtgtttg 417 ||||||||||||||||||||| Sbjct: 730681 gggatggatggcgtgtgtttg 730701
>ref|XM_567721.1| Cryptococcus neoformans var. neoformans JEC21 uroporphyrinogen-III synthase (CNK02510) partial mRNA Length = 900 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 gggatggatggcgtgtgtttg 417 ||||||||||||||||||||| Sbjct: 761 gggatggatggcgtgtgtttg 781
>gb|AF184920.1| Rattus norvegicus GDNF-family receptor alpha 3 (GFRalpha-3) mRNA, partial cds Length = 667 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcagggcctgctgctgtgtcc 285 ||||||||||||||||||||| Sbjct: 223 tcagggcctgctgctgtgtcc 243
>gb|AF412056.1|AF412056 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds Length = 1249 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 1066 ggcaattcattcttggctttc 1086
>emb|BX822776.1|CNS0A647 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1335 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 1130 ggcaattcattcttggctttc 1150
>ref|NM_053398.1| Rattus norvegicus glial cell line derived neurotrophic factor family receptor alpha 3 (Gfra3), mRNA Length = 2070 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcagggcctgctgctgtgtcc 285 ||||||||||||||||||||| Sbjct: 683 tcagggcctgctgctgtgtcc 703
>gb|AY087696.1| Arabidopsis thaliana clone 37744 mRNA, complete sequence Length = 1262 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 1068 ggcaattcattcttggctttc 1088
>gb|BC079378.1| Rattus norvegicus glial cell line derived neurotrophic factor family receptor alpha 3, mRNA (cDNA clone MGC:94884 IMAGE:7110848), complete cds Length = 2070 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 tcagggcctgctgctgtgtcc 285 ||||||||||||||||||||| Sbjct: 683 tcagggcctgctgctgtgtcc 703
>dbj|AP001304.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFD22 Length = 33330 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggctttc 307 ||||||||||||||||||||| Sbjct: 7267 ggcaattcattcttggctttc 7287
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggc 98 ||||||||||||||||||||| Sbjct: 69887 cggcggcggcggagccgaggc 69907
>ref|XM_475658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 73 gagcacggcggcggcggagccgaggcgg 100 ||||||||||||||||||| ||||||| Sbjct: 423 gagcacggcggcggcggaggggaggcgg 396
>gb|DQ214174.1| Taeniopygia guttata clone 0058P0054D01 GCIP-interacting protein p29 variant 3-like mRNA, complete sequence Length = 1118 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggcggg 101 ||||||||||||||| |||||||| Sbjct: 143 cggcggcggcggagcagaggcggg 166
>gb|DQ214173.1| Taeniopygia guttata clone 0058P0047D04 GCIP-interacting protein p29 variant 3-like mRNA, complete sequence Length = 1118 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggcggg 101 ||||||||||||||| |||||||| Sbjct: 143 cggcggcggcggagcagaggcggg 166
>gb|DQ214172.1| Taeniopygia guttata clone 0061P0008H08 GCIP-interacting protein p29 variant 2-like mRNA, complete sequence Length = 1054 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggcggg 101 ||||||||||||||| |||||||| Sbjct: 122 cggcggcggcggagcagaggcggg 145
>ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 990 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 652 cggcggcggcggagccgagg 633
>ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2595 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 221 cggcggcggcggagccgagg 240
>ref|XM_463595.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4884 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgaggcgggcaaa 105 |||||||||||| |||| |||||||||| Sbjct: 52 cggcggcggcggcgccgcggcgggcaaa 25
>ref|XM_477029.1| Oryza sativa (japonica cultivar-group), mRNA Length = 825 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagc 92 |||||||||||||||||||| Sbjct: 337 gagcacggcggcggcggagc 356
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 acggcggcggcggagccgaggcgg 100 ||||||||||||| |||||||||| Sbjct: 27828 acggcggcggcggcgccgaggcgg 27805
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gacgagcacggcggcggcgg 89 |||||||||||||||||||| Sbjct: 37258 gacgagcacggcggcggcgg 37277
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagccgaggcgg 100 ||||||||||||||||||| ||||||| Sbjct: 104510 gagcacggcggcggcggaggggaggcgg 104537
>ref|NM_153083.2| Mus musculus thiamine triphosphatase (Thtpa), mRNA Length = 2824 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 1799 attcagggcctgctgctgtg 1818
>gb|BT014146.1| Lycopersicon esculentum clone 133265F, mRNA sequence Length = 1413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcaattcattcttggcttt 306 |||||||||||||||||||| Sbjct: 1115 ggcaattcattcttggcttt 1134
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 68168 cctccgggtggtgccgccgg 68149
>ref|XM_904306.2| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4062 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 2018 cctccgggtggtgccgccgg 1999
>ref|XM_980881.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 2099 cctccgggtggtgccgccgg 2080
>ref|XM_973126.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4083 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 2039 cctccgggtggtgccgccgg 2020
>ref|XM_979704.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4065 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 2021 cctccgggtggtgccgccgg 2002
>ref|XM_538648.2| PREDICTED: Canis familiaris similar to GDNF family receptor alpha 3 preproprotein (LOC481527), mRNA Length = 1200 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cagggcctgctgctgtgtcc 285 |||||||||||||||||||| Sbjct: 634 cagggcctgctgctgtgtcc 653
>gb|AF432864.2| Mus musculus thiamine triphosphatase mRNA, complete cds Length = 2655 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 1645 attcagggcctgctgctgtg 1664
>emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chromosome 1q42.1-43, complete sequence Length = 132887 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ggcggcggcggagccgaggcgggc 102 |||||||||||||| ||||||||| Sbjct: 5343 ggcggcggcggagctgaggcgggc 5320
>emb|AL133334.16| Human DNA sequence from clone RP4-669F6 on chromosome 6p12.3-21.2, complete sequence Length = 107626 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 agaagaactagcaggctgtg 370 |||||||||||||||||||| Sbjct: 22118 agaagaactagcaggctgtg 22137
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gccgcttcctcaacacgaagaagg 70 |||||||||||| ||||||||||| Sbjct: 266989 gccgcttcctcagcacgaagaagg 267012
>gb|BC025562.1| Mus musculus thiamine triphosphatase, mRNA (cDNA clone MGC:38198 IMAGE:5322971), complete cds Length = 2824 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 1799 attcagggcctgctgctgtg 1818
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 agcggctcctcctggccgcc 220 |||||||||||||||||||| Sbjct: 1042804 agcggctcctcctggccgcc 1042823
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence Length = 193714 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 146450 cctccgggtggtgccgccgg 146431
>dbj|AK132479.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732454L17 product:thiamine triphosphatase, full insert sequence Length = 2518 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 1507 attcagggcctgctgctgtg 1526
>dbj|AK156312.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016D04 product:Similar to zinc finger protein 398 homolog [Homo sapiens], full insert sequence Length = 3650 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgggtggtgccgccgg 148 |||||||||||||||||||| Sbjct: 1608 cctccgggtggtgccgccgg 1589
>dbj|AK085173.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430048O16 product:thiamine triphosphatase, full insert sequence Length = 2521 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 1511 attcagggcctgctgctgtg 1530
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cgcttcctcaacacgaagaa 68 |||||||||||||||||||| Sbjct: 26381348 cgcttcctcaacacgaagaa 26381329
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 acggcggcggcggagccgaggcgg 100 ||||||||||||| |||||||||| Sbjct: 6902570 acggcggcggcggcgccgaggcgg 6902547 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gacgagcacggcggcggcgg 89 |||||||||||||||||||| Sbjct: 2585146 gacgagcacggcggcggcgg 2585127
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cacggcggcggcggagccgaggcg 99 ||||||||||||||||| |||||| Sbjct: 28792148 cacggcggcggcggagcggaggcg 28792125
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagccgaggcgg 100 ||||||||||||||||||| ||||||| Sbjct: 3783580 gagcacggcggcggcggaggggaggcgg 3783607
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 6732134 cggcggcggcggagccgagg 6732115
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggcgggcaaa 105 |||||||||||| |||| |||||||||| Sbjct: 39599412 cggcggcggcggcgccgcggcgggcaaa 39599439
>gb|BC096537.1| Mus musculus cDNA clone IMAGE:5704594 Length = 4262 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 3227 attcagggcctgctgctgtg 3246
>gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosome 14, complete sequence Length = 217099 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attcagggcctgctgctgtg 282 |||||||||||||||||||| Sbjct: 146436 attcagggcctgctgctgtg 146455
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgaggcgggcaaa 105 |||||||||||| |||| |||||||||| Sbjct: 80368 cggcggcggcggcgccgcggcgggcaaa 80395
>ref|XM_222920.3| PREDICTED: Rattus norvegicus formin 2 (predicted) (Fmn2_predicted), mRNA Length = 4650 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 57 cggcggcggcggagccgagg 76
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cacggcggcggcggagccgaggcg 99 ||||||||||||||||| |||||| Sbjct: 99923 cacggcggcggcggagcggaggcg 99900
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gagcacggcggcggcggagc 92 |||||||||||||||||||| Sbjct: 20027 gagcacggcggcggcggagc 20046
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 53187 cggcggcggcggagccgagg 53168
>dbj|AK120075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008L07, full insert sequence Length = 5516 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgaggcgggcaaa 105 |||||||||||| |||| |||||||||| Sbjct: 77 cggcggcggcggcgccgcggcgggcaaa 50
>gb|AY375523.1| Crepidospermum prancei 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 5.8S ribosomal RNA gene, internal transcribed spacer 1, complete sequence; and 18S ribosomal RNA, partial sequence Length = 679 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cacgcgatgcggcgggcgaggggc 39 ||||||| |||||||||||||||| Sbjct: 555 cacgcgacgcggcgggcgaggggc 578
>ref|XM_320109.2| Anopheles gambiae str. PEST ENSANGP00000018351 (ENSANGG00000015862), partial mRNA Length = 1179 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cgaagaaggacgagcacggc 81 |||||||||||||||||||| Sbjct: 419 cgaagaaggacgagcacggc 438
>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full insert sequence Length = 990 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cggcggcggcggagccgagg 97 |||||||||||||||||||| Sbjct: 652 cggcggcggcggagccgagg 633
>dbj|AK073742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G24, full insert sequence Length = 1640 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cgcttcctcaacacgaagaa 68 |||||||||||||||||||| Sbjct: 744 cgcttcctcaacacgaagaa 763
>gb|U65406.1|HSU65406 Human alternatively spliced potassium channels ROM-K1, ROM-K2, ROM-K3, ROM-K4, ROM-K5, and ROM-K6 (KCNJ1) gene, complete cds Length = 40046 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gatttggcttgattttgata 455 |||||||||||||||||||| Sbjct: 15267 gatttggcttgattttgata 15286
>dbj|AP001122.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-744N12, complete sequence Length = 217393 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gatttggcttgattttgata 455 |||||||||||||||||||| Sbjct: 204543 gatttggcttgattttgata 204524
>gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome 12, complete sequence Length = 233568 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gagtgggatttggcttgatt 449 |||||||||||||||||||| Sbjct: 65003 gagtgggatttggcttgatt 65022
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 acggcggcggcggagccgaggcgg 100 ||||||||||||| |||||||||| Sbjct: 6969037 acggcggcggcggcgccgaggcgg 6969014 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gacgagcacggcggcggcgg 89 |||||||||||||||||||| Sbjct: 2594177 gacgagcacggcggcggcgg 2594158
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cgcttcctcaacacgaagaa 68 |||||||||||||||||||| Sbjct: 26309517 cgcttcctcaacacgaagaa 26309498
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cgcttcctcaacacgaagaa 68 |||||||||||||||||||| Sbjct: 95621 cgcttcctcaacacgaagaa 95602
>dbj|AP000920.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-740D6, complete sequence Length = 114349 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gatttggcttgattttgata 455 |||||||||||||||||||| Sbjct: 16865 gatttggcttgattttgata 16846 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,798,021 Number of Sequences: 3902068 Number of extensions: 3798021 Number of successful extensions: 86357 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84096 Number of HSP's gapped (non-prelim): 2261 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
