>gb|AC158520.2| Mus musculus BAC clone RP23-434P22 from chromosome 14, complete
             sequence
          Length = 201291

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 433   atgctgggttctctgctgcaaatg 456
             ||||||||||||||||||||||||
Sbjct: 73658 atgctgggttctctgctgcaaatg 73635

>gb|AE014174.1| Mus musculus piebald deletion region section 2 of 11 of the complete
              sequence
          Length = 400029

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 433    atgctgggttctctgctgcaaatg 456
              ||||||||||||||||||||||||
Sbjct: 215607 atgctgggttctctgctgcaaatg 215584

>emb|CT009530.5| Mouse DNA sequence from clone RP23-33O7 on chromosome 14, complete
             sequence
          Length = 188700

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 433   atgctgggttctctgctgcaaatg 456
             ||||||||||||||||||||||||
Sbjct: 40292 atgctgggttctctgctgcaaatg 40315

>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2
          Length = 101154

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    tcttccaccatggagctgcaaca 43
             |||||||||||||||||||||||
Sbjct: 93695 tcttccaccatggagctgcaaca 93673

>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 21   tcttccaccatggagctgcaaca 43
            |||||||||||||||||||||||
Sbjct: 4512 tcttccaccatggagctgcaaca 4490

>emb|AL953874.2| Human DNA sequence from clone CTD-2267G17 on chromosome X Contains the
             GAGED3 gene for family D G antigen 3, a GAGE family
             pseudogene and the 5' end of a pseudogene similar to part
             of family D G antigen 2 (GAGED2), complete sequence
          Length = 94514

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    agtggttcagggccagctggg 79
             |||||||||||||||||||||
Sbjct: 29644 agtggttcagggccagctggg 29664

>gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex region containing the Q region of
              class I
          Length = 159179

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    acagggctagcagggctagc 236
              ||||||||||||||||||||
Sbjct: 110960 acagggctagcagggctagc 110941

>gb|AC112330.5| Rattus norvegicus 15 BAC CH230-185E8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 158526

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    tccaccatggagctgcaacatctg 47
             |||| |||||||||||||||||||
Sbjct: 87249 tccaacatggagctgcaacatctg 87272

>gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete sequence
          Length = 170774

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    caactcagtggttcagggcc 72
             ||||||||||||||||||||
Sbjct: 71439 caactcagtggttcagggcc 71420

>gb|BT012794.1| Lycopersicon esculentum clone 113791F, mRNA sequence
          Length = 1479

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 387 tccactgtcaatttccc-acctttgttgtcaa 417
           |||||||||||||||||  |||||||||||||
Sbjct: 954 tccactgtcaatttcccttcctttgttgtcaa 923

>gb|AC140554.3| Mus musculus BAC clone RP23-151C18 from chromosome 18, complete
             sequence
          Length = 215716

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   ccaacagggctagcagggct 233
             ||||||||||||||||||||
Sbjct: 69970 ccaacagggctagcagggct 69951

>gb|AY488486.1| Capsicum annuum ATP synthase gamma subunit mRNA, complete cds
          Length = 778

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 387 tccactgtcaatttccc-acctttgttgtcaa 417
           |||||||||||||||||  |||||||||||||
Sbjct: 553 tccactgtcaatttcccttcctttgttgtcaa 522

>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete sequence
          Length = 167394

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ccaacagggctagcagggct 233
              ||||||||||||||||||||
Sbjct: 128480 ccaacagggctagcagggct 128461

>emb|Z93942.1|HS230I19 Human DNA sequence from clone RP1-230I19 on chromosome 20q12-13.12
              Contains part of the PTPRT gene for protein tyrosine
              phosphatase receptor type T,  genomic marker D20S858, a ca
              repeat polymorphism, ESTs, STS and GSSs, complete sequence
          Length = 144201

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     aggtaacagctccaactcag 114
              ||||||||||||||||||||
Sbjct: 125457 aggtaacagctccaactcag 125476

>gb|AC098654.2| Homo sapiens chromosome 1 clone RP11-475O6, complete sequence
          Length = 159975

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    ctgcaaatggaaaaacatat 467
              ||||||||||||||||||||
Sbjct: 156901 ctgcaaatggaaaaacatat 156920

>dbj|AK051192.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130013L19
           product:unclassifiable, full insert sequence
          Length = 1497

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 ccaacagggctagcagggct 233
           ||||||||||||||||||||
Sbjct: 597 ccaacagggctagcagggct 578

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      caaatgctaaatgtcacttt 328
                ||||||||||||||||||||
Sbjct: 19788563 caaatgctaaatgtcacttt 19788582

>gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 clone GS1-11M9, complete
              sequence
          Length = 226594

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    acagggctagcagggctagc 236
              ||||||||||||||||||||
Sbjct: 156215 acagggctagcagggctagc 156196

>gb|AC103595.2| Homo sapiens chromosome 1 clone RP11-415P10, complete sequence
          Length = 122000

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   ctgcaaatggaaaaacatat 467
             ||||||||||||||||||||
Sbjct: 40306 ctgcaaatggaaaaacatat 40325

>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0048D08
          Length = 145772

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    caaatgctaaatgtcacttt 328
              ||||||||||||||||||||
Sbjct: 120569 caaatgctaaatgtcacttt 120588

>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   caaatgctaaatgtcacttt 328
             ||||||||||||||||||||
Sbjct: 28722 caaatgctaaatgtcacttt 28741

>gb|AC011013.17|AC011013 Mus musculus chromosome 11, clone RP23-218N2, complete sequence
          Length = 201728

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gttcagggccagctgggttt 82
              ||||||||||||||||||||
Sbjct: 152836 gttcagggccagctgggttt 152855

>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   gcatgtatatgctgggttct 444
             ||||||||||||||||||||
Sbjct: 31651 gcatgtatatgctgggttct 31670

>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete
              sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    acagggctagcagggctagc 236
              ||||||||||||||||||||
Sbjct: 110439 acagggctagcagggctagc 110420

>emb|AL808118.8| Mouse DNA sequence from clone RP23-287O8 on chromosome 4, complete
              sequence
          Length = 164068

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     cttccaccatggagctgcaa 41
              ||||||||||||||||||||
Sbjct: 163112 cttccaccatggagctgcaa 163093

>emb|AL772365.3| Mouse DNA sequence from clone RP23-403H9 on chromosome 4, complete
            sequence
          Length = 55296

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   cttccaccatggagctgcaa 41
            ||||||||||||||||||||
Sbjct: 1044 cttccaccatggagctgcaa 1025

>emb|AL592489.13| Mouse DNA sequence from clone RP23-226J16 on chromosome 11, complete
              sequence
          Length = 155262

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gttcagggccagctgggttt 82
              ||||||||||||||||||||
Sbjct: 144246 gttcagggccagctgggttt 144265


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,918,635
Number of Sequences: 3902068
Number of extensions: 4918635
Number of successful extensions: 110965
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 110890
Number of HSP's gapped (non-prelim): 77
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)