>TAT_HV1SC (P05906) TAT protein (Transactivating regulatory protein)|
          Length = 101

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 227 DVRLNWLPHAGWKKTAWTSGCFQCHACSAIGQGRTRTTGLGIFHGGQRRR 78
           D RL    H G +  A  + C+ C  C    Q    T GLGI +G ++RR
Sbjct: 5   DPRLEPWKHPGSQPKAACTSCY-CKKCCFHCQVCFTTKGLGISYGRKKRR 53

>CTL4_MOUSE (Q91VA1) Choline transporter-like protein 4 (Solute carrier family|
           44 member 4)
          Length = 707

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 325 FFFFSGRFLKQGAGYDSNVFFLNYPWFTFTNLVMYA 218
           FFFFSGR   +G G D     LNY W      +M A
Sbjct: 612 FFFFSGRI--KGLGKDFENPNLNYYWLPIMTSIMGA 645

>Y4MM_RHISN (P55572) Hypothetical protein y4mM precursor|
          Length = 541

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
 Frame = -3

Query: 313 SGRFLKQGAGYD--SNVFFLNYPWFTFTNLVMYA*IGCHMQA----GRKRHG-RQAAFNA 155
           + R++  G G+     +  L +PWF    +V+ A  G HM       + R G R  AF A
Sbjct: 404 AARYVLAGGGFSFAQELPVLIFPWFILGGIVLAAHSGGHMAVEWIYDKLRDGARSTAFVA 463

Query: 154 MHAVL*AKGAQGQLDLEFSMVGKDAG 77
            + V  + GA   L  +  +VG+ AG
Sbjct: 464 ANLV--SAGAFLMLGYQAYLVGEIAG 487

>TORC_ECOLI (P33226) Cytochrome c-type protein torC|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 257 LSLVHLH*SRDVRLNWLPHAGWKKTAWTSGCFQCHACSAI 138
           L+LV +     + L  LPH G K T+ T  C  CH+   +
Sbjct: 18  LALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPV 57

>TORC_ECO57 (P58359) Cytochrome c-type protein torC|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 257 LSLVHLH*SRDVRLNWLPHAGWKKTAWTSGCFQCHACSAI 138
           L+LV +     + L  LPH G K T+ T  C  CH+   +
Sbjct: 18  LALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPV 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,398,646
Number of Sequences: 219361
Number of extensions: 822093
Number of successful extensions: 1999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)