Clone Information

BLAST Search Result

Clone Name	baal32g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (E...	188	9e-48
2	RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (E...	124	2e-28
3	RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (E...	124	2e-28
4	RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (E...	122	6e-28
5	RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (E...	120	4e-27
6	RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II sub...	111	2e-24
7	RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II sub...	109	7e-24
8	RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa pol...	93	7e-19
9	RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa pol...	92	9e-19
10	RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II sub...	65	1e-10
11	RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II sub...	65	2e-10
12	RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II sub...	65	2e-10
13	RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 k...	62	1e-09
14	RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 k...	60	4e-09
15	RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC...	60	6e-09
16	RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC...	58	2e-08
17	RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subu...	57	4e-08
18	RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC...	57	5e-08
19	RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subu...	56	7e-08
20	RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2....	56	7e-08
21	RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC...	56	9e-08
22	RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2....	55	1e-07
23	RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2....	54	3e-07
24	RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subu...	52	1e-06
25	RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2....	45	1e-04
26	RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2....	45	2e-04
27	RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2....	44	3e-04
28	RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2....	42	0.001
29	RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2....	37	0.034
30	RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2....	37	0.034
31	RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2....	37	0.044
32	RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2....	33	0.49
33	RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2....	33	0.64
34	RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2....	32	1.1
35	CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome cond...	32	1.4
36	KINH_STRPU (P35978) Kinesin heavy chain	32	1.8
37	RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2....	32	1.8
38	INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)	32	1.8
39	DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase ...	31	2.4
40	TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon ca...	31	2.4
41	DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphat...	31	2.4
42	RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2....	31	3.2
43	CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome cond...	31	3.2
44	CI010_HUMAN (Q9NZB2) Protein C9orf10	30	4.1
45	THYX_PYRHO (O58498) Thymidylate synthase thyX (EC 2.1.1.148) (TS...	30	5.4
46	INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)	30	5.4
47	CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas...	30	5.4
48	ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains:...	30	7.0
49	DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein...	30	7.0
50	TSGA_SALTY (Q8ZLK7) Protein tsgA	30	7.0
51	TSGA_SALTI (Q8Z1Z8) Protein tsgA	30	7.0
52	TSGA_SALPA (Q5PLW2) Protein tsgA	30	7.0
53	TSGA_SALCH (Q57J00) Protein tsgA	30	7.0
54	ENV_VILV1 (P23422) Env polyprotein (Coat polyprotein) [Contains:...	29	9.2
55	ENV_VILVK (P35954) Env polyprotein (Coat polyprotein) [Contains:...	29	9.2
56	ENV_VILV (P03379) Env polyprotein (Coat polyprotein) [Contains: ...	29	9.2
57	YFEB_YERPE (Q56953) Chelated iron transport system membrane prot...	29	9.2
58	CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Al...	29	9.2
59	CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Al...	29	9.2
60	CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Al...	29	9.2
61	CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Al...	29	9.2
62	CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Al...	29	9.2
63	ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot...	29	9.2

>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.6 kDa polypeptide)
          Length = 116

 Score =  188 bits (478), Expect = 9e-48
 Identities = 90/114 (78%), Positives = 102/114 (89%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 524
           Y+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK  FE E  +F +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSN 114

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>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11) (RPB14)
          Length = 117

 Score =  124 bits (311), Expect = 2e-28
 Identities = 57/105 (54%), Positives = 77/105 (73%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP V FAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 497
           YK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

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>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score =  124 bits (311), Expect = 2e-28
 Identities = 57/105 (54%), Positives = 77/105 (73%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP V FAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 497
           YK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

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>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score =  122 bits (307), Expect = 6e-28
 Identities = 57/107 (53%), Positives = 78/107 (72%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 503
           YK+PHPL++K ++RI T +  SP +A+  AI DL  EL   ++ F+D
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKD 107

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>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
          Length = 117

 Score =  120 bits (300), Expect = 4e-27
 Identities = 56/107 (52%), Positives = 77/107 (71%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ EG KK+  E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 503
           YKLPHPL++K ++RI T S+ SP +A+  AI DL  EL   ++ F +
Sbjct: 61  YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFRE 107

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>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score =  111 bits (277), Expect = 2e-24
 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ +  KK+  EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG
Sbjct: 1   MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED---EKTRFESMKQ 533
           YK PHPL++KI++R+ T + ++P  A T AI DL  EL  L+   +    + T+    ++
Sbjct: 60  YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQSTDTER 119

Query: 534 GY 539
           GY
Sbjct: 120 GY 121

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>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score =  109 bits (272), Expect = 7e-24
 Identities = 55/106 (51%), Positives = 75/106 (70%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAP  +E F++ +  KK   EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG
Sbjct: 1   MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 500
           YK PHPL++KI++RI T + ++P  A T AI DL  EL  L+   +
Sbjct: 60  YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105

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>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC|
           2.7.7.6) (B13.6)
          Length = 120

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 47/108 (43%), Positives = 62/108 (57%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MNAPDR+E F++ EG  K+  + DTK  NA   T E+EDHT+GN++R +L  D  V FA 
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 506
           YK+ HP   +  +RI T     P  A   A N +  +L  LK  FE E
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108

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>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC|
           2.7.7.6)
          Length = 123

 Score = 92.4 bits (228), Expect = 9e-19
 Identities = 49/108 (45%), Positives = 63/108 (58%)
 Frame = +3

Query: 183 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 362
           MN P+RYE  +   G  KV++E D+K  NAA  T+E+EDHT+ N+L  QL  D  V FAG
Sbjct: 1   MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59

Query: 363 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 506
           YK+PHPL +  I+R+ T    SP Q    A   L   LE +K  F  E
Sbjct: 60  YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107

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>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 34/112 (30%), Positives = 61/112 (54%)
 Frame = +3

Query: 186 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 365
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP V FA Y
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66

Query: 366 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 521
           + PHPLQ  I + I     +   +  +  ++ +  ++  L++ F +   +++
Sbjct: 67  RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETFANRVQKYK 117

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>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 37/118 (31%), Positives = 63/118 (53%)
 Frame = +3

Query: 186 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 365
           N P+  +  V+  G KKV+     K  +   F I+ EDHTIGN++++QL +DP V FA Y
Sbjct: 8   NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66

Query: 366 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMKQGY 539
           + PHPLQ  I + I     +   +  +  +N++  ++  LK+ F  +  +++     Y
Sbjct: 67  RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENFAKKIQKYKESNSYY 123

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>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 34/112 (30%), Positives = 62/112 (55%)
 Frame = +3

Query: 186 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 365
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP V FA Y
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66

Query: 366 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 521
           + PHPLQ  I + I     +   +  +  ++ +  ++  L++ F ++  +++
Sbjct: 67  RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETFVNKVQKYK 117

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>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide|
           (EC 2.7.7.6)
          Length = 125

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 49/84 (58%)
 Frame = +3

Query: 264 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAY 443
           + + +F I++EDHT+GN LR  + ++P V F GY +PHP + K+  RI TA  ++     
Sbjct: 32  LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91

Query: 444 TQAINDLDKELENLKQAFEDEKTR 515
            + ++DL    + + + F ++  R
Sbjct: 92  RKGLDDLIDLCDAVTEKFTEQLPR 115

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>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide|
           (EC 2.7.7.6) (AC19)
          Length = 142

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +3

Query: 270 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQ 449
           +ASF I  EDHT+GN LR  + ++P+V F GY +PHP +  + +RI T  +++   A  +
Sbjct: 60  SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119

Query: 450 AINDL 464
            + DL
Sbjct: 120 GLKDL 124

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>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 114

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 26/89 (29%), Positives = 47/89 (52%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           +  +F +  EDHT+GN LR  + ++P V F GY + HP + KI  RI T +     + + 
Sbjct: 22  SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81

Query: 447 QAINDLDKELENLKQAFEDEKTRFESMKQ 533
           + +N+L    +++   FE     ++  K+
Sbjct: 82  RGLNELVDVCQHVLNTFETSIKEYKEQKE 110

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>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
 Frame = +3

Query: 222 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 392
           EG +K + E         +  +F +  EDHT+GN LR  + ++P V F GY   HP + K
Sbjct: 20  EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESK 79

Query: 393 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMK 530
           I +RI T       + + + +N+L    +++   FE     ++  K
Sbjct: 80  INLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQK 125

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>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 144

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 29/95 (30%), Positives = 49/95 (51%)
 Frame = +3

Query: 240 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 419
           SFE+D   +    +    EDHTIGN ++  L R   V F GY +PHPL+ KI+ R+ T  
Sbjct: 53  SFEQDPSNLTLIMY---EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109

Query: 420 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 524
             +  +   +A   +++    ++  FE+   + +S
Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFEESYEQSQS 144

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>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 112

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 26/86 (30%), Positives = 44/86 (51%)
 Frame = +3

Query: 276 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 455
           +F +  EDHT+GN LR  + +  +V F GY + HP + KI  RI T      ++     +
Sbjct: 24  TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGL 83

Query: 456 NDLDKELENLKQAFEDEKTRFESMKQ 533
           N+L    +++ Q FE     F+  ++
Sbjct: 84  NNLTDVCKHVLQTFEARMKEFKEQEE 109

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>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 145

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 33/95 (34%), Positives = 50/95 (52%)
 Frame = +3

Query: 240 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 419
           SFE+D   +   +  +  EDHTIGN ++  L R   V F GY +PHPL+ KI+ R+ T  
Sbjct: 54  SFEQDPSNL---TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110

Query: 420 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 524
                     A+  L K  E+++Q F   + +FE+
Sbjct: 111 G-------INALEVLVKAFESVEQVFSTIRGKFEA 138

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>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 93

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           N     I+ E+HT+GN+L+  L + P V FA Y  PHPL   II++I T    SP +A  
Sbjct: 11  NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70

Query: 447 QAI----NDLDKELENLK 488
           +AI     D +K +E +K
Sbjct: 71  KAIELAEEDTNKFIEEVK 88

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>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = +3

Query: 222 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 392
           EG +K + E            +F +  EDHT+GN LR  + ++P V F GY   HP + K
Sbjct: 20  EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESK 79

Query: 393 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE----DEKTRFESMKQ 533
           I +RI T       + + + +N+L    +++   FE    D K +  S K+
Sbjct: 80  INLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKKE 130

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>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 92

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           N     IE EDHT+GN++   L R   V FA Y  PHPL  KIIV+I T    +P  A  
Sbjct: 11  NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70

Query: 447 QAINDL 464
           +AI ++
Sbjct: 71  KAIENI 76

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>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 90

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 32/80 (40%), Positives = 42/80 (52%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           N     I+ E+HTIGN+L+  L + P V FA Y LPHPL   I ++I T    S  +A  
Sbjct: 11  NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70

Query: 447 QAINDLDKELENLKQAFEDE 506
           +AI    +  EN    F DE
Sbjct: 71  KAI----ELAENYANLFIDE 86

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>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 105

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 42/85 (49%)
 Frame = +3

Query: 276 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 455
           +F    E HT+GN L+  + R P V F GY +PHP + K+  RI  + +        + +
Sbjct: 19  TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77

Query: 456 NDLDKELENLKQAFEDEKTRFESMK 530
            DL+   ++    FE E   F +MK
Sbjct: 78  EDLEGLCDHTIVTFEKEMAEFNAMK 102

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>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 440
           N   F +E EDHT  N+L   L  +P+V F  Y + HP+    K   R+ T  + +P +A
Sbjct: 11  NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70

Query: 441 YTQAINDLDKELENLKQAFE 500
             +A   + +  + + +A+E
Sbjct: 71  LEEAAKKIFERAKEVLEAWE 90

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>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 94

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 440
           N   F +E EDHT  N+L   LH + +V FAGY + HP+    K   ++ T  + +P +A
Sbjct: 11  NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70

Query: 441 YTQAINDLDKELENLKQAFE 500
             +A   +      + +A++
Sbjct: 71  LEEAAQKIFDRAREVLEAWK 90

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>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 279 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQA 452
           F +E EDHT  N+L   L  DP+V F  Y + HP+    K   R+ T  + +P +A  +A
Sbjct: 15  FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74

Query: 453 INDLDKELENLKQAFE 500
              +    + +  A+E
Sbjct: 75  ARKIFNRAKEVLDAWE 90

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>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 258 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP--LQYKIIVRIHTASQSSP 431
           K  +   F +E EDHT  N+L   L  +P+V F  Y + HP  +  K   R+ T  + +P
Sbjct: 8   KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITP 67

Query: 432 TQAYTQAINDLDKELENLKQAFE 500
            +A  +A   +    + +  A+E
Sbjct: 68  EKALEEAAKKIFDRAKEVLDAWE 90

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>RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 92

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +3

Query: 294 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKE 473
           E +T+ + L   L  DP+V +  + + HPLQ     ++    + +P +A  +A+N +  +
Sbjct: 24  ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKL-KVKRGNPLEAIQRAVNAILSD 82

Query: 474 LENLKQAF 497
           LE L++ F
Sbjct: 83  LEELERGF 90

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>RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 111

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +3

Query: 222 EGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKI 395
           E T + S    +K  N+ +  +   D+T+   L  ++ +D  V  A Y + HP+    +I
Sbjct: 4   ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQI 63

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 524
            VR+       P  A  +A+  L K  E+L   F+ E  R+ES
Sbjct: 64  YVRV---KSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 103

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>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 85

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           N      E E HT+ N+LR  L  D  V  A Y + HP+  +  + I   S     +A  
Sbjct: 9   NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68

Query: 447 QAINDLDKELENL 485
           + + D   E   L
Sbjct: 69  ETLRDRCDEFRRL 81

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>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 112

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = +3

Query: 294 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS--PTQAYTQAIND-- 461
           EDHT+ N+LR  L+R   +  A Y++ HP    I+ + H   +    P +   +A+++  
Sbjct: 25  EDHTLCNLLRWALNRQDGI-IATYRIEHP----ILGKEHKVDEERYVPPKMRIRAVDEDA 79

Query: 462 -----LDKELENLKQAFEDEKTRF 518
                L++ +E L +  E+ K  F
Sbjct: 80  DAREALERAIEELLELVEEAKEEF 103

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>RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 99

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKII--------VRIHTASQ 422
           N     +  EDH++ N+L+  L     V  A Y + HPL +           + I T   
Sbjct: 11  NLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEG 70

Query: 423 SSPTQAYTQAINDLDKELENLKQAFEDEK 509
           + P +   + + D+ K  + L    +++K
Sbjct: 71  TDPLEVLKEGLRDIIKMCDTLLDELKEKK 99

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>RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 96

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +3

Query: 267 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 446
           N      + E HT+ N L+   +    V  A Y + HPL+      I T        A  
Sbjct: 16  NLIKVQFKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALI 75

Query: 447 QAINDLDKELENLK 488
           QA+  L +EL N K
Sbjct: 76  QALKKLKEELLNFK 89

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>CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome condensation-related|
            SMC-associated protein 1) (Chromosome-associated protein
            D2) (hCAP-D2) (XCAP-D2 homolog)
          Length = 1401

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
 Frame = -3

Query: 325  MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 167
            +RRMLP++WS    V++A    +    +  +  P G + R+ ++ A I N  L       
Sbjct: 675  VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQALIQNLSLLLVDASV 729

Query: 166  -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQG-REAMLVGTAARGR 5
                CL    C    K      +   LW       A  P +     ML+G  ARG+
Sbjct: 730  GTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGMMARGK 785

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>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 1    PPSHGQPFPPASPPSLEQALSPS---NAAEQSIGRASTLPIGG 120
            PPSHG P P +   S E++L+P+   N  +++  R   LP GG
Sbjct: 954  PPSHGSPEPISHNNSFEKSLNPNDAENMEKKANKRLPKLPPGG 996

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>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 86

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 285 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQA 452
           I+ E HT  N+L+  L  D +V  A Y +PHPL  +  + I T S   P +A  +A
Sbjct: 17  IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRA 71

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>INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)|
          Length = 2126

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 242  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAA- 72
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 869  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 919

Query: 71   LLGESACSREGGDAGGNG 18
            LL ++A S   G+    G
Sbjct: 920  LLHDAADSTASGEEDDEG 937

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>DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase (EC 6.3.4.6);|
            Allophanate hydrolase (EC 3.5.1.54)]
          Length = 1835

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +3

Query: 189  APDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYK 368
            A DRY   +V  G  +++F    +I      ++ +++ TIG +   Q  R   + F GYK
Sbjct: 1441 AGDRY--VLVEYGDNEMNFNISYRI--ECLISLVKKNKTIGIVEMSQGVRSVLIEFDGYK 1496

Query: 369  LPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKT 512
            +      K++V   T  Q       T         +  L  AFED KT
Sbjct: 1497 VTQKELLKVLVAYETEIQFDENWKIT-------SNIIRLPMAFEDSKT 1537

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>TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon cancer antigen|
           NY-CO-45) (Fragment)
          Length = 753

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
 Frame = -2

Query: 341 VPVQLHAEDVADGVVFTFNCERCS-IHDLCILL---EGHLLCALRH---DEALIAVRGIH 183
           V VQ   E VAD      NC  C  I D CI+    +GH   AL     ++ L++VR + 
Sbjct: 279 VEVQTAGEQVAD----RRNCIPCPYIGDPCIVRYREDGHYYRALITNICEDYLVSVRLVD 334

Query: 182 LQSTPGSFLFALLW-MPEQLQAPPIGNVDALPMDCSAALLGESACSREGGD 33
             +         LW +P +L + P+    A P   S   + E  CS+EG D
Sbjct: 335 FGNIEDCVDPKALWAIPSELLSVPM---QAFPCCLSGFNISEGLCSQEGND 382

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>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1147

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 28  PASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRANKKEP 168
           P SP S    L P NA +   G  STLP+G   S SG  + + K+ P
Sbjct: 798 PTSPTSEAPPLPPRNAGKGPTGPPSTLPLGTQTS-SGSSTLSKKRPP 843

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>RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 111

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +3

Query: 237 VSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKIIVRIH 410
           VS EKD+ I+   ++     D+T+   L  ++ +D  V  A Y + HP+    +I V++ 
Sbjct: 14  VSKEKDSIIVEMINY-----DNTLLRTLVEEILKDDQVIEARYYIKHPIIDNPQIYVKV- 67

Query: 411 TASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 524
                 P  A  ++I  L K  E+L    E E  ++ S
Sbjct: 68  --KSGKPQAAIKRSIRKLSKLYEDLGAQVEKEIEKYRS 103

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>CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome|
           condensation-related SMC-associated protein 1)
           (Chromosome-associated protein D2) (mCAP-D2) (XCAP-D2
           homolog)
          Length = 1392

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
 Frame = -3

Query: 325 MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 167
           +RRMLP++WS    V++A    +    +  +  P G + R+ ++   I N  L       
Sbjct: 665 VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQTLIHNLSLLLVDASV 719

Query: 166 -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQGRE----AMLVGTAARGR 5
               CL    C    K      ++  LW    R   + P+   E     ML+G  ARG+
Sbjct: 720 GTIQCLEEILCEFVQKDEVKPAVIQLLW---ERATEKVPSSPLERCSSVMLLGMMARGK 775

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>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = -2

Query: 236 LLCALRHDEALIAVRGIHLQSTPGSFLFAL---LWMPEQLQAPPIGNVDALPMDCSAALL 66
           L C LR+       R +  Q        AL   L+ P+QLQ   I N+D   +  SA  +
Sbjct: 715 LCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFM 774

Query: 65  GESACSREGGDAGGNGCPWE 6
                +    DA G   PWE
Sbjct: 775 SGVDMALFANDACGQPIPWE 794

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>THYX_PYRHO (O58498) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)|
          Length = 243

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/95 (23%), Positives = 48/95 (50%)
 Frame = +3

Query: 126 ELLRHPQ*SKQEGARC*LEMNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHT 305
           +L+RH   S  + ++  +++N  D  E FV+PE     S +KD++++      ++R    
Sbjct: 77  QLVRHRIASYTQQSQRYIKINPEDVEETFVIPE-----SIKKDSELLKEWKELLKRSLEL 131

Query: 306 IGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIH 410
               +   +H++     A + LP  ++ KI+V ++
Sbjct: 132 YEKSIERGIHQED----ARFILPQSVKTKIVVTMN 162

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>INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)|
          Length = 2190

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -2

Query: 242  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAAL 69
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 863  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 913

Query: 68   L----GESACSREGGDAG 27
            L     + A S E  D G
Sbjct: 914  LLHDAVDDAASGEEDDEG 931

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>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 1   PPSHGQPFPPASP-PSLEQA--LSPSNAAEQSI--GRASTLPIGGAWSCSGIHSRANKKE 165
           PP    P PP  P P+L Q   L PS  A   +     STLP       S + S+AN + 
Sbjct: 544 PPPQTPPLPPLPPIPALPQQPPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQP 603

Query: 166 P 168
           P
Sbjct: 604 P 604

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>ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 991

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = -2

Query: 356 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 177
           KVNIW P +     V  GV++           L I+L G L+  +R      A   I L 
Sbjct: 68  KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEMRKGNQCQAEEVIALV 117

Query: 176 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 39
           S PG F               + +V+ +P+ C      +  C  EG
Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150

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>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor|
            (Glycoprotein 340) (Gp-340) (Surfactant
            pulmonary-associated D-binding protein)
          Length = 2413

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 237  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 88
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1441 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1495

Query: 87   GLLGGVAGRE-----RLLKGGRRC 31
                  AG E     RL+ GG RC
Sbjct: 1496 -SRASTAGSESTLALRLVNGGDRC 1518



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
 Frame = -1

Query: 237  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNW-QC*CPA 91
            P +    R S H     S P N WL           ++CS   + + P P  W     PA
Sbjct: 1570 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSAAQSQSTPRPDTWLTTNLPA 1629

Query: 90   YGLLGGVAGRERLLKGGRRC 31
              +    +   RL+ GG RC
Sbjct: 1630 LTVGSESSLALRLVNGGDRC 1649



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 237  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 88
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1312 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1366

Query: 87   GLLGGVAGRE-----RLLKGGRRC 31
                  AG E     RL+ GG RC
Sbjct: 1367 -SHASTAGSESSLALRLVNGGDRC 1389



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 237  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 88
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1183 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1237

Query: 87   GLLGGVAGRE-----RLLKGGRRC 31
                  AG E     RL+ GG RC
Sbjct: 1238 -SHASTAGSESSLALRLVNGGDRC 1260



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 237  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 88
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1054 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHSEDAGVICSASQSRPTPSPDTWPT----- 1108

Query: 87   GLLGGVAGRE-----RLLKGGRRC 31
                  AG E     RL+ GG RC
Sbjct: 1109 -SHASTAGSESSLALRLVNGGDRC 1131



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 237 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 88
           P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 295 PIVLDDVRCSGHESYLWSCPHNGWLTHNCGHSEDAGVICSAPQSRPTPSPDTWPT----- 349

Query: 87  GLLGGVAGRE-----RLLKGGRRC 31
                 AG E     RL+ GG RC
Sbjct: 350 -SHASTAGPESSLALRLVNGGDRC 372

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>TSGA_SALTY (Q8ZLK7) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 448 WVYACVGEDWLAVWILT 398
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

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>TSGA_SALTI (Q8Z1Z8) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 448 WVYACVGEDWLAVWILT 398
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

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>TSGA_SALPA (Q5PLW2) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 448 WVYACVGEDWLAVWILT 398
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

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>TSGA_SALCH (Q57J00) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 448 WVYACVGEDWLAVWILT 398
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

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>ENV_VILV1 (P23422) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 989

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = -2

Query: 356 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 177
           KVNIW P +     V  GV++           L I+L G L+  +R      A   I L 
Sbjct: 68  KVNIWEPCEKWFAQVIWGVLWV----------LQIVLWGCLMWEMRKGNQCQAEEVIALV 117

Query: 176 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 39
           S PG F               + +V+ +P+ C      +  C  EG
Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150

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>ENV_VILVK (P35954) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 983

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = -2

Query: 356 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 177
           KVNIW P +     V  GV++           L I+L G L+  +R      A   I L 
Sbjct: 68  KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEVRKGNQCQAEEVIALV 117

Query: 176 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 39
           S PG F               + +V+ +P+ C      +  C  EG
Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150

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>ENV_VILV (P03379) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 982

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = -2

Query: 356 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 177
           KVNIW P +     V  GV++           L I+L G L+  +R      A   I L 
Sbjct: 68  KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEVRKGNQCQAEEVIALV 117

Query: 176 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 39
           S PG F               + +V+ +P+ C      +  C  EG
Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150

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>YFEB_YERPE (Q56953) Chelated iron transport system membrane protein yfeB|
          Length = 296

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 338 PVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCAL 222
           PV +  E V D V  T+N    +I+D    L G  +CAL
Sbjct: 4   PVFVRPELVVDNVTVTYNNGHTAIYDASFSLTGGTICAL 42

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>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 515
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210

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>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 515
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210

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>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 515
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210

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>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein) (Putative gene 8 protein) (Pg8)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 515
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210

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>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 515
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHKEALSSLTSKAEGLEKSLSSLETR 210

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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 1   PPSHGQPFPPASPPSLEQALSPSNAAEQSIGRA-----STLPIGGAWSCSGIHS 147
           PP+ G+ +PP SP S   A   ++  E  IG A     +++P+  + S  G+ S
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGS 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,128,387
Number of Sequences: 219361
Number of extensions: 1980810
Number of successful extensions: 8021
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 7179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7981
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result