>TCF17_RAT (Q02975) Zinc finger protein 354A (Transcription factor 17) (Renal|
           transcription factor Kid-1) (Kidney, ischemia, and
           developmentally-regulated protein 1)
          Length = 576

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -1

Query: 117 RKASSQLPSNSSRYSRKRIHSSNDPGSTYRKSPSTFRFH 1
           RKAS+ L      +SRK+ +  N+ G+T+ KS S+ R+H
Sbjct: 306 RKASASLSGCQRAHSRKKTYLCNECGNTF-KSSSSLRYH 343

>TCF17_MOUSE (Q61751) Zinc finger protein 354A (Transcription factor 17) (Renal|
           transcription factor Kid-1) (Kidney, ischemia, and
           developmentally-regulated protein 1)
          Length = 572

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -1

Query: 117 RKASSQLPSNSSRYSRKRIHSSNDPGSTYRKSPSTFRFH 1
           RKAS+ L      +SRK+ +  N+ G+T+ KS S+ R+H
Sbjct: 302 RKASTSLSGCQRIHSRKKTYLCNECGNTF-KSSSSLRYH 339

>CLOCK_MOUSE (O08785) Circadian locomoter output cycles protein kaput (mCLOCK)|
          Length = 855

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 183 SQSPLGDARYSSFHLCETLTQLRKASSQLPSNSSRYSRKRIHSS-NDPGSTYRKSPS 16
           SQ    D R ++  L E L   R   S  PS SSR SRK  H++ +DP ST  K P+
Sbjct: 403 SQDSGSDNRINTVSLKEALE--RFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPT 457

>CLOCK_HUMAN (O15516) Circadian locomoter output cycles protein kaput (hCLOCK)|
          Length = 846

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 183 SQSPLGDARYSSFHLCETLTQLRKASSQLPSNSSRYSRKRIHSS-NDPGSTYRKSPS 16
           SQ    D R ++  L E L   R   S  PS SSR SRK  H++ +DP ST  K P+
Sbjct: 403 SQDSGSDNRINTVSLKEALE--RFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPT 457

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 269 ARHPVVLNVNDWMFCHGGLLPHHVEYGIERINKEVSNWMQGSSEDNDDTDLPFIATRGYD 448
           +R+PVV+         GGLLP+   YG+ ++  +   W +   + ND    P I + G  
Sbjct: 743 SRYPVVV---------GGLLPNEQRYGLVQVRIKRHRWHKKILKTND----PLIFSMG-- 787

Query: 449 SVVWTRFYS 475
              W RF S
Sbjct: 788 ---WRRFQS 793


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,236,434
Number of Sequences: 219361
Number of extensions: 2059591
Number of successful extensions: 5415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5415
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)