ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal31p04 |
|---|---|
| Clone Library Name | barley_pub |
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 71.6 bits (174), Expect(2) = 5e-15 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEENPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 304 Score = 26.9 bits (58), Expect(2) = 5e-15 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 307 PTREDRIGVCK 317
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 70.1 bits (170), Expect(2) = 5e-15 Identities = 32/35 (91%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNK ENPRVPIVVTGNDFSTLYAPLIRDG EKFY Sbjct: 260 YNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFY 294 Score = 28.5 bits (62), Expect(2) = 5e-15 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTRDDRIGVCK Sbjct: 297 PTRDDRIGVCK 307
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 71.6 bits (174), Expect(2) = 5e-15 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEENPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 304 Score = 26.9 bits (58), Expect(2) = 5e-15 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 307 PTREDRIGVCK 317
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 70.5 bits (171), Expect(2) = 5e-15 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKE+NPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 260 YNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 294 Score = 28.1 bits (61), Expect(2) = 5e-15 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTRDDR+GVCK Sbjct: 297 PTRDDRVGVCK 307
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 71.6 bits (174), Expect(2) = 5e-15 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEENPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 257 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 291 Score = 26.9 bits (58), Expect(2) = 5e-15 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 294 PTREDRIGVCK 304
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 70.5 bits (171), Expect(2) = 1e-14 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKE+NPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 266 YNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 300 Score = 26.9 bits (58), Expect(2) = 1e-14 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 303 PTREDRIGVCK 313
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 68.6 bits (166), Expect(2) = 2e-14 Identities = 31/35 (88%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEEN RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 272 YNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 306 Score = 28.1 bits (61), Expect(2) = 2e-14 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTRDDR+GVCK Sbjct: 309 PTRDDRVGVCK 319
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 71.6 bits (174), Expect(2) = 2e-14 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEENPRVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 304 Score = 25.0 bits (53), Expect(2) = 2e-14 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +2 Query: 113 PTRDDRIGVC 142 PTR+DRIGVC Sbjct: 307 PTREDRIGVC 316
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 70.5 bits (171), Expect(2) = 6e-14 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEENPRVPI+VTGNDFSTLYAPLIRDG +KFY Sbjct: 267 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFY 301 Score = 24.6 bits (52), Expect(2) = 6e-14 Identities = 8/10 (80%), Positives = 10/10 (100%) Frame = +2 Query: 113 PTRDDRIGVC 142 PTR+DRIG+C Sbjct: 304 PTREDRIGIC 313
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 67.4 bits (163), Expect(2) = 1e-13 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNK+EN RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 269 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 303 Score = 26.9 bits (58), Expect(2) = 1e-13 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 306 PTREDRIGVCK 316
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 67.4 bits (163), Expect(2) = 1e-13 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKE+N RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 274 YNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFY 308 Score = 26.9 bits (58), Expect(2) = 1e-13 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 311 PTREDRIGVCK 321
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 67.4 bits (163), Expect(2) = 1e-13 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNK+EN RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 274 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 308 Score = 26.9 bits (58), Expect(2) = 1e-13 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 311 PTREDRIGVCK 321
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 66.6 bits (161), Expect(2) = 2e-13 Identities = 30/35 (85%), Positives = 31/35 (88%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNKEEN RVPI+ TGNDFSTLYAPLIRDG EKFY Sbjct: 270 YNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFY 304 Score = 26.9 bits (58), Expect(2) = 2e-13 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 113 PTRDDRIGVCK 145 PTR+DRIGVCK Sbjct: 307 PTREDRIGVCK 317
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 67.4 bits (163), Expect(2) = 4e-13 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNK+EN RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 274 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 308 Score = 25.0 bits (53), Expect(2) = 4e-13 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +2 Query: 113 PTRDDRIGVC 142 PTR+DRIGVC Sbjct: 311 PTREDRIGVC 320
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 66.2 bits (160), Expect(2) = 8e-13 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 YNK++N RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 268 YNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFY 302 Score = 25.0 bits (53), Expect(2) = 8e-13 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +2 Query: 113 PTRDDRIGVC 142 PTR+DRIGVC Sbjct: 305 PTREDRIGVC 314
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 61.2 bits (147), Expect(2) = 2e-11 Identities = 28/35 (80%), Positives = 29/35 (82%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 Y EE PRVPIV TGNDFSTLYAPLIRDG EK+Y Sbjct: 243 YKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYY 277 Score = 25.0 bits (53), Expect(2) = 2e-11 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +2 Query: 113 PTRDDRIGVC 142 PTR+DRIGVC Sbjct: 280 PTREDRIGVC 289
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/39 (69%), Positives = 29/39 (74%) Frame = +1 Query: 1 YNKEENPRVPIVVTGNDFSTLYAPLIRDGXXEKFYCFSH 117 Y+ RVPI+VTGNDFSTLYAPLIRDG EKFY H Sbjct: 143 YDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPH 181
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 56.6 bits (135), Expect = 2e-08 Identities = 27/34 (79%), Positives = 29/34 (85%), Gaps = 2/34 (5%) Frame = +1 Query: 10 EENP--RVPIVVTGNDFSTLYAPLIRDGXXEKFY 105 + NP RVPI+VTGNDFSTLYAPLIRDG EKFY Sbjct: 144 DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFY 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,730,084 Number of Sequences: 219361 Number of extensions: 288792 Number of successful extensions: 657 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 80,573,946 effective HSP length: 24 effective length of database: 75,309,282 effective search space used: 1807422768 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
