| Clone Name | baal32e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193790.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3552 Score = 369 bits (186), Expect = 8e-99 Identities = 302/343 (88%) Strand = Plus / Plus Query: 157 ggaggagcggtgggcgtcgctgtgcaactgcgtggtcaacttcctgctggaggagaagta 216 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 27 ggaggagcggtgggcgtcgctgtgcaactgcgtggtgaacttcctgctggaggagaggta 86 Query: 217 ccacctcacggcgctcgagctgctacaggagctgcaagaggacggccgccacgcgcaggc 276 |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct: 87 ccacctcacggcgctcgagctgttgcaggagctgcaggaggacggccgccacgcgcacgc 146 Query: 277 gctccgcctccgctcattcttctccgaccccaccttcttnnnnnnngacctagtcgctcg 336 ||||||||||||||| ||||||||||||||| | | || ||||| ||||| || Sbjct: 147 gctccgcctccgctccttcttctccgaccccgcgctgttcccgcccgacctcgtcgcccg 206 Query: 337 cgcctcctcctcaccgcccggtgctgatccacagagtttgctagaagagaaaattgcagc 396 ||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||| || || Sbjct: 207 cgcgtcctccgcgccgcccggtgctgatccacagagcttgctggaagagaaaatagcggc 266 Query: 397 agaagaaaagttggcactcactgagtatgatctccgactagccaaggaagatcttacatg 456 ||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||| | | Sbjct: 267 agaagaaaagttggccctcactgattatgatctccggctagccagagaagatctttccag 326 Query: 457 catgaagcttgagttgcaaaagcatcaagaatcatctcctgat 499 ||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 327 gttgaagcttgagttacaaaagcagaaagaatcttctcctgat 369 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 551 gatgtcaaaatttcagcattaggccctctgaaagataatgaacggaaagatctgaactgt 610 |||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 427 gatgccaaaatttcaacattaggtcctcttaaggataatgaacggaaagatctgaactgt 486 Query: 611 gctgtaaaggaatacctgcttttggctggg 640 ||||| || |||||| |||||||||||||| Sbjct: 487 gctgtcaaagaatacttgcttttggctggg 516
>dbj|AK121086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M06, full insert sequence Length = 3979 Score = 369 bits (186), Expect = 8e-99 Identities = 302/343 (88%) Strand = Plus / Plus Query: 157 ggaggagcggtgggcgtcgctgtgcaactgcgtggtcaacttcctgctggaggagaagta 216 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 187 ggaggagcggtgggcgtcgctgtgcaactgcgtggtgaacttcctgctggaggagaggta 246 Query: 217 ccacctcacggcgctcgagctgctacaggagctgcaagaggacggccgccacgcgcaggc 276 |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct: 247 ccacctcacggcgctcgagctgttgcaggagctgcaggaggacggccgccacgcgcacgc 306 Query: 277 gctccgcctccgctcattcttctccgaccccaccttcttnnnnnnngacctagtcgctcg 336 ||||||||||||||| ||||||||||||||| | | || ||||| ||||| || Sbjct: 307 gctccgcctccgctccttcttctccgaccccgcgctgttcccgcccgacctcgtcgcccg 366 Query: 337 cgcctcctcctcaccgcccggtgctgatccacagagtttgctagaagagaaaattgcagc 396 ||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||| || || Sbjct: 367 cgcgtcctccgcgccgcccggtgctgatccacagagcttgctggaagagaaaatagcggc 426 Query: 397 agaagaaaagttggcactcactgagtatgatctccgactagccaaggaagatcttacatg 456 ||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||| | | Sbjct: 427 agaagaaaagttggccctcactgattatgatctccggctagccagagaagatctttccag 486 Query: 457 catgaagcttgagttgcaaaagcatcaagaatcatctcctgat 499 ||||||||||||| |||||||| ||||||| ||||||||| Sbjct: 487 gttgaagcttgagttacaaaagcagaaagaatcttctcctgat 529 Score = 107 bits (54), Expect = 4e-20 Identities = 81/90 (90%) Strand = Plus / Plus Query: 551 gatgtcaaaatttcagcattaggccctctgaaagataatgaacggaaagatctgaactgt 610 |||| |||||||||| ||||||| ||||| || ||||| ||||||||||||||||||||| Sbjct: 587 gatgccaaaatttcaacattaggtcctcttaaggataacgaacggaaagatctgaactgt 646 Query: 611 gctgtaaaggaatacctgcttttggctggg 640 ||||| || |||||| |||||||||||||| Sbjct: 647 gctgtcaaagaatacttgcttttggctggg 676
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 244 bits (123), Expect = 3e-61 Identities = 144/151 (95%) Strand = Plus / Plus Query: 157 ggaggagcggtgggcgtcgctgtgcaactgcgtggtcaacttcctgctggaggagaagta 216 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 18160044 ggaggagcggtgggcgtcgctgtgcaactgcgtggtgaacttcctgctggaggagaggta 18160103 Query: 217 ccacctcacggcgctcgagctgctacaggagctgcaagaggacggccgccacgcgcaggc 276 |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct: 18160104 ccacctcacggcgctcgagctgttgcaggagctgcaggaggacggccgccacgcgcacgc 18160163 Query: 277 gctccgcctccgctcattcttctccgacccc 307 ||||||||||||||| ||||||||||||||| Sbjct: 18160164 gctccgcctccgctccttcttctccgacccc 18160194 Score = 143 bits (72), Expect = 8e-31 Identities = 126/144 (87%) Strand = Plus / Plus Query: 356 ggtgctgatccacagagtttgctagaagagaaaattgcagcagaagaaaagttggcactc 415 ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct: 18160815 ggtgctgatccacagagcttgctggaagagaaaatagcggcagaagaaaagttggccctc 18160874 Query: 416 actgagtatgatctccgactagccaaggaagatcttacatgcatgaagcttgagttgcaa 475 ||||| ||||||||||| ||||||| ||||||||| | | ||||||||||||| ||| Sbjct: 18160875 actgattatgatctccggctagccagagaagatctttccaggttgaagcttgagttacaa 18160934 Query: 476 aagcatcaagaatcatctcctgat 499 ||||| ||||||| ||||||||| Sbjct: 18160935 aagcagaaagaatcttctcctgat 18160958 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 551 gatgtcaaaatttcagcattaggccctctgaaagataatgaacggaaagatctgaactgt 610 |||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 18162097 gatgccaaaatttcaacattaggtcctcttaaggataatgaacggaaagatctgaactgt 18162156 Query: 611 gctgtaaaggaatacctgcttttggctggg 640 ||||| || |||||| |||||||||||||| Sbjct: 18162157 gctgtcaaagaatacttgcttttggctggg 18162186
>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1075D06 Length = 130528 Score = 244 bits (123), Expect = 3e-61 Identities = 144/151 (95%) Strand = Plus / Plus Query: 157 ggaggagcggtgggcgtcgctgtgcaactgcgtggtcaacttcctgctggaggagaagta 216 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 11489 ggaggagcggtgggcgtcgctgtgcaactgcgtggtgaacttcctgctggaggagaggta 11548 Query: 217 ccacctcacggcgctcgagctgctacaggagctgcaagaggacggccgccacgcgcaggc 276 |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct: 11549 ccacctcacggcgctcgagctgttgcaggagctgcaggaggacggccgccacgcgcacgc 11608 Query: 277 gctccgcctccgctcattcttctccgacccc 307 ||||||||||||||| ||||||||||||||| Sbjct: 11609 gctccgcctccgctccttcttctccgacccc 11639 Score = 143 bits (72), Expect = 8e-31 Identities = 126/144 (87%) Strand = Plus / Plus Query: 356 ggtgctgatccacagagtttgctagaagagaaaattgcagcagaagaaaagttggcactc 415 ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct: 12260 ggtgctgatccacagagcttgctggaagagaaaatagcggcagaagaaaagttggccctc 12319 Query: 416 actgagtatgatctccgactagccaaggaagatcttacatgcatgaagcttgagttgcaa 475 ||||| ||||||||||| ||||||| ||||||||| | | ||||||||||||| ||| Sbjct: 12320 actgattatgatctccggctagccagagaagatctttccaggttgaagcttgagttacaa 12379 Query: 476 aagcatcaagaatcatctcctgat 499 ||||| ||||||| ||||||||| Sbjct: 12380 aagcagaaagaatcttctcctgat 12403 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 551 gatgtcaaaatttcagcattaggccctctgaaagataatgaacggaaagatctgaactgt 610 |||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 13542 gatgccaaaatttcaacattaggtcctcttaaggataatgaacggaaagatctgaactgt 13601 Query: 611 gctgtaaaggaatacctgcttttggctggg 640 ||||| || |||||| |||||||||||||| Sbjct: 13602 gctgtcaaagaatacttgcttttggctggg 13631
>dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504D03 Length = 139201 Score = 244 bits (123), Expect = 3e-61 Identities = 144/151 (95%) Strand = Plus / Plus Query: 157 ggaggagcggtgggcgtcgctgtgcaactgcgtggtcaacttcctgctggaggagaagta 216 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 136485 ggaggagcggtgggcgtcgctgtgcaactgcgtggtgaacttcctgctggaggagaggta 136544 Query: 217 ccacctcacggcgctcgagctgctacaggagctgcaagaggacggccgccacgcgcaggc 276 |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct: 136545 ccacctcacggcgctcgagctgttgcaggagctgcaggaggacggccgccacgcgcacgc 136604 Query: 277 gctccgcctccgctcattcttctccgacccc 307 ||||||||||||||| ||||||||||||||| Sbjct: 136605 gctccgcctccgctccttcttctccgacccc 136635 Score = 143 bits (72), Expect = 8e-31 Identities = 126/144 (87%) Strand = Plus / Plus Query: 356 ggtgctgatccacagagtttgctagaagagaaaattgcagcagaagaaaagttggcactc 415 ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct: 137256 ggtgctgatccacagagcttgctggaagagaaaatagcggcagaagaaaagttggccctc 137315 Query: 416 actgagtatgatctccgactagccaaggaagatcttacatgcatgaagcttgagttgcaa 475 ||||| ||||||||||| ||||||| ||||||||| | | ||||||||||||| ||| Sbjct: 137316 actgattatgatctccggctagccagagaagatctttccaggttgaagcttgagttacaa 137375 Query: 476 aagcatcaagaatcatctcctgat 499 ||||| ||||||| ||||||||| Sbjct: 137376 aagcagaaagaatcttctcctgat 137399 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 551 gatgtcaaaatttcagcattaggccctctgaaagataatgaacggaaagatctgaactgt 610 |||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 138538 gatgccaaaatttcaacattaggtcctcttaaggataatgaacggaaagatctgaactgt 138597 Query: 611 gctgtaaaggaatacctgcttttggctggg 640 ||||| || |||||| |||||||||||||| Sbjct: 138598 gctgtcaaagaatacttgcttttggctggg 138627
>ref|XM_883447.1| Leishmania major strain Friedlin AMP deaminase (L302.11) partial mRNA Length = 6282 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 tgctggaggagaagtaccacct 222 |||||||||||||||||||||| Sbjct: 1283 tgctggaggagaagtaccacct 1304
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 tgctggaggagaagtaccacct 222 |||||||||||||||||||||| Sbjct: 92263 tgctggaggagaagtaccacct 92284
>emb|AJ308515.1|SCO308515 Synthetic construct for NOS 3'UTR/plant junction region Length = 1045 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Minus Query: 173 tcgctgtgcaactgcgtggtcaacttcctgctggaggagaagtacc 218 ||||||||||| |||||||| ||||| ||| |||| ||||| |||| Sbjct: 965 tcgctgtgcaattgcgtggtgaactttctgttggaagagaactacc 920
>gb|BC075575.1| Xenopus tropicalis cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4), mRNA (cDNA clone MGC:89547 IMAGE:6993532), complete cds Length = 1515 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 aagagaaaattgcagcagaagaaaa 405 |||||||||||||||||||| |||| Sbjct: 1480 aagagaaaattgcagcagaaaaaaa 1504
>ref|NM_020618.3| Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA Length = 2960 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gaggcggtgggcgccgccgcg 157 ||||||||||||||||||||| Sbjct: 243 gaggcggtgggcgccgccgcg 223
>ref|NM_001006919.1| Xenopus tropicalis cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) (cdkn2b), mRNA Length = 1515 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 aagagaaaattgcagcagaagaaaa 405 |||||||||||||||||||| |||| Sbjct: 1480 aagagaaaattgcagcagaaaaaaa 1504
>gb|BC065043.1| Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, mRNA (cDNA clone MGC:86123 IMAGE:5685483), complete cds Length = 2960 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gaggcggtgggcgccgccgcg 157 ||||||||||||||||||||| Sbjct: 243 gaggcggtgggcgccgccgcg 223
>gb|AC018758.2|AC018758 Homo sapiens chromosome 19, BAC CTB-61I7 (BC52850), complete sequence Length = 185409 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 271 gcaggcgctccgcctccgctcattc 295 |||||||||| |||||||||||||| Sbjct: 159135 gcaggcgctcggcctccgctcattc 159111
>emb|Z60270.1|HS198D1F H.sapiens CpG island DNA genomic Mse1 fragment, clone 198d1, forward read cpg198d1.ft1a Length = 207 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 gcaggcgctccgcctccgctcattc 295 |||||||||| |||||||||||||| Sbjct: 62 gcaggcgctcggcctccgctcattc 86
>gb|AF108815.1|AF108815 Petromyzon marinus homeobox protein SIX11 (Six11) mRNA, partial cds Length = 449 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcgcaggcgctccgcctccg 288 ||||||||||||||||||||| Sbjct: 217 cgcgcaggcgctccgcctccg 197
>ref|NM_014297.3| Homo sapiens ethylmalonic encephalopathy 1 (ETHE1), mRNA Length = 978 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 gcaggcgctccgcctccgctcattc 295 |||||||||| |||||||||||||| Sbjct: 23 gcaggcgctcggcctccgctcattc 47
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gaggcggtgggcgccgccgcg 157 ||||||||||||||||||||| Sbjct: 131577 gaggcggtgggcgccgccgcg 131557
>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete sequence Length = 114881 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 cacagagtttgctagaagagaaaat 390 ||||||||||| ||||||||||||| Sbjct: 11239 cacagagtttgatagaagagaaaat 11263
>ref|NM_121626.3| Arabidopsis thaliana unknown protein AT5G16210 mRNA, complete cds Length = 3870 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 gtcaacttcctgctggaggagaagtacc 218 |||||||||||| |||||||||| |||| Sbjct: 232 gtcaacttcctgatggaggagaactacc 259
>ref|XM_465212.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ggtgggcgccgccgcggagg 161 |||||||||||||||||||| Sbjct: 165 ggtgggcgccgccgcggagg 184
>ref|XM_471315.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4326 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gccgaggatggaggcggtgg 146 |||||||||||||||||||| Sbjct: 250 gccgaggatggaggcggtgg 269
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ggaggcggtgggcgccgccg 155 |||||||||||||||||||| Sbjct: 55390 ggaggcggtgggcgccgccg 55409
>ref|XM_458078.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C10131g) partial mRNA Length = 2736 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gagctgctacaggagctgca 252 |||||||||||||||||||| Sbjct: 1538 gagctgctacaggagctgca 1557
>ref|XM_592546.2| PREDICTED: Bos taurus similar to TGF beta receptor associated protein -1 (LOC514660), mRNA Length = 5421 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 acttcctgctggaggagaag 214 |||||||||||||||||||| Sbjct: 620 acttcctgctggaggagaag 639
>gb|AC006004.2| Homo sapiens PAC clone RP4-803F10 from 7, complete sequence Length = 103530 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgctgtaaaggaatacctgc 629 |||||||||||||||||||| Sbjct: 42795 tgctgtaaaggaatacctgc 42776
>gb|AC005996.2| Homo sapiens PAC clone RP4-555L14 from 7, complete sequence Length = 122823 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 gtgctgtaaaggaatacctg 628 |||||||||||||||||||| Sbjct: 65229 gtgctgtaaaggaatacctg 65210
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cggccgccacgcgcaggcgc 278 |||||||||||||||||||| Sbjct: 2921200 cggccgccacgcgcaggcgc 2921181
>gb|AC146169.2| Pan troglodytes BAC clone RP43-1A11 from 7, complete sequence Length = 190018 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 gtgctgtaaaggaatacctg 628 |||||||||||||||||||| Sbjct: 38087 gtgctgtaaaggaatacctg 38068
>gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, complete sequence Length = 179594 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgctgtaaaggaatacctgc 629 |||||||||||||||||||| Sbjct: 20747 tgctgtaaaggaatacctgc 20728
>emb|AL354949.10| Human DNA sequence from clone RP11-82L20 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and a novel gene, complete sequence Length = 180569 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgctgtaaaggaatacctgc 629 |||||||||||||||||||| Sbjct: 61656 tgctgtaaaggaatacctgc 61637
>gb|AY070422.1| Arabidopsis thaliana At5g16210 mRNA sequence Length = 938 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 gtcaacttcctgctggaggagaagtacc 218 |||||||||||| |||||||||| |||| Sbjct: 233 gtcaacttcctgatggaggagaactacc 260
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gagctgctacaggagctgca 252 |||||||||||||||||||| Sbjct: 844244 gagctgctacaggagctgca 844225
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccgaggatggaggcggtgg 146 |||||||||||||||||||| Sbjct: 63315 gccgaggatggaggcggtgg 63296
>emb|AL391148.1|ATT21H19 Arabidopsis thaliana DNA chromosome 5, BAC clone T21H19 (ESSA project) Length = 77311 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 gtcaacttcctgctggaggagaagtacc 218 |||||||||||| |||||||||| |||| Sbjct: 41766 gtcaacttcctgatggaggagaactacc 41739
>emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 7/7 Length = 195767 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gcgccgaggatggaggcggt 144 |||||||||||||||||||| Sbjct: 21100 gcgccgaggatggaggcggt 21119
>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164519 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 gttcaaccaacaggaccaac 548 |||||||||||||||||||| Sbjct: 54833 gttcaaccaacaggaccaac 54814
>gb|AC019188.6| Homo sapiens BAC clone RP11-309H6 from 4, complete sequence Length = 207835 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 catcaagaatcatctcctga 498 |||||||||||||||||||| Sbjct: 160986 catcaagaatcatctcctga 161005
>gb|AC090919.6| Homo sapiens chromosome 8, clone RP11-42C24, complete sequence Length = 184897 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 aagagaaaattgcagcagaa 400 |||||||||||||||||||| Sbjct: 85854 aagagaaaattgcagcagaa 85835
>gb|AY069870.1| Arabidopsis thaliana AT5g16210/T21H19_130 mRNA, complete cds Length = 3821 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 gtcaacttcctgctggaggagaagtacc 218 |||||||||||| |||||||||| |||| Sbjct: 216 gtcaacttcctgatggaggagaactacc 243
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcgccgaggatggaggcggt 144 |||||||||||||||||||| Sbjct: 432955 gcgccgaggatggaggcggt 432936
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gccgaggatggaggcggtgg 146 |||||||||||||||||||| Sbjct: 9968365 gccgaggatggaggcggtgg 9968346
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ggaggcggtgggcgccgccg 155 |||||||||||||||||||| Sbjct: 2671408 ggaggcggtgggcgccgccg 2671389
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tcgctcgcgcctcctcctcaccgc 353 ||||||||||||||||||| |||| Sbjct: 1188054 tcgctcgcgcctcctcctccccgc 1188031
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tcgctcgcgcctcctcctcaccgc 353 ||||||||||||||||||| |||| Sbjct: 28977290 tcgctcgcgcctcctcctccccgc 28977267
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgcctcctcctcaccgcccg 356 |||||||||||||||||||| Sbjct: 13284301 cgcctcctcctcaccgcccg 13284282 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 ggtgggcgccgccgcggaggagcg 165 ||||||||||||||||| |||||| Sbjct: 6316103 ggtgggcgccgccgcggcggagcg 6316126
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ggtgggcgccgccgcggagg 161 |||||||||||||||||||| Sbjct: 12337565 ggtgggcgccgccgcggagg 12337546
>gb|AC084048.5| Homo sapiens BAC clone RP11-61G19 from 4, complete sequence Length = 131584 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gcatgaagcttgagttgcaa 475 |||||||||||||||||||| Sbjct: 2844 gcatgaagcttgagttgcaa 2825
>gb|AC020553.4|AC020553 Homo sapiens BAC clone RP11-462D9 from 8, complete sequence Length = 160811 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 aagagaaaattgcagcagaa 400 |||||||||||||||||||| Sbjct: 99039 aagagaaaattgcagcagaa 99058
>ref|XM_237113.2| PREDICTED: Rattus norvegicus transforming growth factor, beta receptor associated protein 1 (predicted) (Tgfbrap1_predicted), mRNA Length = 2625 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 acttcctgctggaggagaag 214 |||||||||||||||||||| Sbjct: 159 acttcctgctggaggagaag 178
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tagaagagaaaattgcagca 397 |||||||||||||||||||| Sbjct: 3160324 tagaagagaaaattgcagca 3160305
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tcgctcgcgcctcctcctcaccgc 353 ||||||||||||||||||| |||| Sbjct: 94827 tcgctcgcgcctcctcctccccgc 94804
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427E01 Length = 146395 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgcctcctcctcaccgcccg 356 |||||||||||||||||||| Sbjct: 46111 cgcctcctcctcaccgcccg 46092
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 ggtgggcgccgccgcggaggagcg 165 ||||||||||||||||| |||||| Sbjct: 110179 ggtgggcgccgccgcggcggagcg 110202
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ggtgggcgccgccgcggagg 161 |||||||||||||||||||| Sbjct: 17702 ggtgggcgccgccgcggagg 17683
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tcgctcgcgcctcctcctcaccgc 353 ||||||||||||||||||| |||| Sbjct: 18928 tcgctcgcgcctcctcctccccgc 18905
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tcgctcgcgcctcctcctcaccgc 353 ||||||||||||||||||| |||| Sbjct: 76648 tcgctcgcgcctcctcctccccgc 76625
>dbj|AK121105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023070F19, full insert sequence Length = 4900 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gccgaggatggaggcggtgg 146 |||||||||||||||||||| Sbjct: 395 gccgaggatggaggcggtgg 414
>dbj|AK108381.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E06, full insert sequence Length = 1135 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ggaggcggtgggcgccgccg 155 |||||||||||||||||||| Sbjct: 482 ggaggcggtgggcgccgccg 501
>dbj|AK102909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113H15, full insert sequence Length = 1112 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ggtgggcgccgccgcggagg 161 |||||||||||||||||||| Sbjct: 165 ggtgggcgccgccgcggagg 184
>dbj|AK072956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C21, full insert sequence Length = 1152 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ggtgggcgccgccgcggagg 161 |||||||||||||||||||| Sbjct: 159 ggtgggcgccgccgcggagg 178
>dbj|AK072371.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M18, full insert sequence Length = 4054 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gccgaggatggaggcggtgg 146 |||||||||||||||||||| Sbjct: 366 gccgaggatggaggcggtgg 385
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gcgccgaggatggaggcggt 144 |||||||||||||||||||| Sbjct: 1504264 gcgccgaggatggaggcggt 1504283
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ggaggcggtgggcgccgccg 155 |||||||||||||||||||| Sbjct: 2680439 ggaggcggtgggcgccgccg 2680420
>emb|CR956373.10| Pig DNA sequence from clone CH242-69F10 on chromosome 17, complete sequence Length = 189898 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 aaaggaatacctgcttttgg 635 |||||||||||||||||||| Sbjct: 169471 aaaggaatacctgcttttgg 169452
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 261 gccgccacgcgcaggcgctccgcctccg 288 ||||||| ||||||| |||||||||||| Sbjct: 3099336 gccgccaggcgcaggagctccgcctccg 3099363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,363,698 Number of Sequences: 3902068 Number of extensions: 5363698 Number of successful extensions: 109072 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108325 Number of HSP's gapped (non-prelim): 742 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)