ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal32e04 |
|---|---|
| Clone Library Name | barley_pub |
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 37.0 bits (84), Expect = 0.047 Identities = 38/106 (35%), Positives = 40/106 (37%), Gaps = 10/106 (9%) Frame = +1 Query: 232 SPPGSSWPGKQRSTGWTRGPGTTASC---CSLEAWPSPGAKTP-STGLGTP*KKEGRNRD 399 SPPGS PG G GPG L G P S GL P G D Sbjct: 8 SPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP--APGAAAD 65 Query: 400 GGAAERL-----LAGGPREAGAVPSHARSHLRGLLRG-EARRPGLR 519 GGA L GGPR+ G RS RG L +A PG R Sbjct: 66 GGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPR 111
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 35.4 bits (80), Expect = 0.14 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 1/116 (0%) Frame = +1 Query: 175 SGRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 354 +G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 11 TGISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPM 55 Query: 355 TGLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 519 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 56 GPRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 103
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 35.0 bits (79), Expect = 0.18 Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 357 G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 170 GISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPMG 214 Query: 358 GLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 519 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 215 PRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 261
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 35.0 bits (79), Expect = 0.18 Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 357 G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 174 GISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPMG 218 Query: 358 GLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 519 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 219 PRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 265
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 33.1 bits (74), Expect = 0.68 Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Frame = +1 Query: 187 SPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLG 366 SP P PR ++ SP W G + GW GP E PSPG + Sbjct: 390 SPQEREPG-PRDRVESP--REWGGTESPRGWEAGP--------REWGPSPGGRGDGP-RR 437 Query: 367 TP*KKEGRNRDGG------AAERLLAGGP-REAGAVPSHARSHLRGLLRGEARRP 510 P K+ GR G A GGP EAGA S G RG AR P Sbjct: 438 RPRKRRGRKGRMGRQLETTATSASATGGPAEEAGA--SAPEGQAGGGPRGRARGP 490
>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)| Length = 1447 Score = 32.7 bits (73), Expect = 0.89 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 4/112 (3%) Frame = +1 Query: 232 SPPGSSW-PGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGA 408 S PG W P ++ S + PG+ +S PG K+PS TP ++G A Sbjct: 1255 SQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTA 1314 Query: 409 AERLLAGGPREAGAVPSHARSHLRGLL---RGEARRPGLRVVDAGEPPAQVP 555 EAG + + H+ L G+ P ++ P +VP Sbjct: 1315 QIWKRQSQEVEAGGIQTVEDEHVAELTLMGEGDISSPNSTLLPPPSTPQEVP 1366
>Y1561_METJA (Q58956) Hypothetical protein MJ1561| Length = 553 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/53 (24%), Positives = 31/53 (58%) Frame = +2 Query: 431 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKENL 589 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE + Sbjct: 76 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYEIDVKVSYDEINKEDGKETI 128
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 32.3 bits (72), Expect = 1.2 Identities = 38/137 (27%), Positives = 51/137 (37%), Gaps = 14/137 (10%) Frame = +1 Query: 172 CSGRSSPGRMS---PT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASC--------CSL 318 C PGR + P P + + GS+ P ++G GPG C+ Sbjct: 308 CQLSVPPGRAAAPPPGPPTASVFAGAGSA-PAPAPASGSGPGPGPAGLPAFLGAELGCAK 366 Query: 319 EAWP---SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLL 489 +P SP A + GL T ++G D G GG AG PS + H+ G Sbjct: 367 AFYPASLSPPAAGTAAGLPTALLRQGLKTDAGGGA---GGGGAGAGQRPSFSIDHIMGHG 423 Query: 490 RGEARRPGLRVVDAGEP 540 G A PG G P Sbjct: 424 GGGAAPPGAGEGSPGPP 440
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 32.0 bits (71), Expect = 1.5 Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 369 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 855 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 902 Query: 370 P*KKEGRNRDGGAAERLLAGGPR-EAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 546 P K R + G GPR E G RG +PG + G+ PA Sbjct: 903 PGKPGPRGQRGPT-------GPRGERGP-------------RGITGKPGPKGNSGGDGPA 942 Query: 547 QVP 555 P Sbjct: 943 GPP 945 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = +1 Query: 235 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 414 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 482 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 536 Query: 415 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 513 +++ +A A+ AR LRG G RPG Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 32.0 bits (71), Expect = 1.5 Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 369 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904 Query: 370 P*KKEGRNRDGGAAERLLAGGPR-EAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 546 P K R + G GPR E G RG +PG + G+ PA Sbjct: 905 PGKPGPRGQRGPT-------GPRGERGP-------------RGITGKPGPKGNSGGDGPA 944 Query: 547 QVP 555 P Sbjct: 945 GPP 947 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = +1 Query: 235 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 414 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 484 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 538 Query: 415 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 513 +++ +A A+ AR LRG G RPG Sbjct: 539 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 573
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 32.0 bits (71), Expect = 1.5 Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 369 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904 Query: 370 P*KKEGRNRDGGAAERLLAGGPR-EAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 546 P K R + G GPR E G RG +PG + G+ PA Sbjct: 905 PGKPGPRGQRGPT-------GPRGERGP-------------RGITGKPGPKGNSGGDGPA 944 Query: 547 QVP 555 P Sbjct: 945 GPP 947
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 31.6 bits (70), Expect = 2.0 Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 8/115 (6%) Frame = +1 Query: 235 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 414 PP + P + R A W +PG + G P E +NR G AE Sbjct: 613 PPAADPPEARTKAPPGRKREPPAQAVRFLPWATPGLE----GAAVPQTLE-KNRAGPEAE 667 Query: 415 RLLAGGPREAGAVPSHARSHLRGLLRGEARRPGL--------RVVDAGEPPAQVP 555 + L GP E G R R +G RP V AGE P + P Sbjct: 668 KRLRRGPEEDGPWGPWDRRGARSQGKGRRARPTSPELESSDDSYVSAGEEPLEAP 722
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +1 Query: 256 GKQRSTGWTRG----PGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAERLL 423 G+++ G T G PG + A P+PGA P G G GR +GG A L Sbjct: 62 GRRKEAGGTAGEPRRPGAESRRSPAAAAPAPGAPVPGGGGGGGGGSPGRG-EGGPAALAL 120 Query: 424 AGGPREAG 447 G ++ G Sbjct: 121 HGAAKKGG 128
>Y1506_METJA (Q58901) Hypothetical protein MJ1506| Length = 437 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/51 (25%), Positives = 30/51 (58%) Frame = +2 Query: 431 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKE 583 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE Sbjct: 117 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYRIDVKVSYDEVDKEDGKE 167
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 31.2 bits (69), Expect = 2.6 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 4/111 (3%) Frame = +1 Query: 193 GRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPS----PGAKTPSTG 360 G++ PT + P PGK G PG L P PG K G Sbjct: 957 GQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDP-GLSGTPGSPGLPGPKGSVGG 1015 Query: 361 LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPG 513 +G P + G + + G P E GA +S L G+ G RPG Sbjct: 1016 MGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGI--GIPGRPG 1064
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 31.2 bits (69), Expect = 2.6 Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 357 G+ S +P+ P ++ P S + S + PG T +PG +P Sbjct: 662 GKHSAAAAAPSPPPAGRKAAPSPSGRKRTPSNSSVQPPGLTEE--------APGPASP-- 711 Query: 358 GLGTP*KKEGRNRDGGAAERLLAGG-PREAGAVPSHARSHLRGLLR--GEARRPGLRVVD 528 TP + R R G +E AGG PR A S + LR R G A +P Sbjct: 712 ---TPPRARARGRGLGLSEPTDAGGPPRSAPEAASMLAAELRDKTRSLGRAEKP------ 762 Query: 529 AGEPPAQVPRR 561 PP Q +R Sbjct: 763 ---PPPQKAKR 770
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 31.2 bits (69), Expect = 2.6 Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 3/126 (2%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 357 GR + P P SPP P +Q+ PG AS A PG + Sbjct: 12 GRQGASKQQPAPPPQPPESPPPPPLPPQQQQPAQ---PGPAASPAGPPAPRGPGGRRAEP 68 Query: 358 GLGTP*KKEGRNRDGGAAERLL---AGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 528 G P GR+ GG + GG R RS LR L PG R+ Sbjct: 69 CPGLPAAAMGRHGGGGGDSGKIVINVGGVRH-----ETYRSTLRTL-------PGTRLAG 116 Query: 529 AGEPPA 546 EP A Sbjct: 117 LTEPEA 122
>ZNT1_MOUSE (Q60738) Zinc transporter 1 (ZnT-1) (Solute carrier family 30| member 1) Length = 503 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 445 GAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPAQVPRRHD 567 GA H+ H G L AR+ G V+AG PP + P + + Sbjct: 143 GAGHGHSHGHGHGHLAKGARKAGRAGVEAGAPPGRAPDQEE 183
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 30.8 bits (68), Expect = 3.4 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 11/123 (8%) Frame = +1 Query: 229 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPG------AKTPSTGLGTP*KKEGR 390 R P PG +R++ T L+ PSPG A + G +P Sbjct: 697 RRPEAEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARAAGGAASP------ 750 Query: 391 NRDGGAAERLL--AGGPREAGAVPSHARS---HLRGLLRGEARRPGLRVVDAGEPPAQVP 555 GG A R GGP + P+ AR H++ R EA P V A P A P Sbjct: 751 -GPGGGARRAAPGTGGPTPGRSPPAPARQSVIHVQAAARDEACAP---TVGALRPCATYP 806 Query: 556 RRH 564 +++ Sbjct: 807 QQN 809
>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)| (Unc-51-like kinase 1) Length = 1050 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSPP-GSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 354 G + G SP+ + + SPP GS+ P R+ ++ GP +AS + P P ++ P+ Sbjct: 740 GARAGGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPA 799 Query: 355 TGLGTP 372 L P Sbjct: 800 PELPAP 805
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = +2 Query: 431 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 556 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = +2 Query: 431 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 556 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 439 EAGAVPSHARSHLRGLLRGEARRPGLR 519 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 439 EAGAVPSHARSHLRGLLRGEARRPGLR 519 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 30.4 bits (67), Expect = 4.4 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 7/114 (6%) Frame = +1 Query: 226 IRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KK--EGRNRD 399 +R P G+ G PG T S A PG + P+ LG P + G D Sbjct: 540 LRKPLSPGMTGRPGPAGPPGPPGATGSVGHPGARGPPGYRGPTGELGDPGPRGDTGEKGD 599 Query: 400 GGAAERLLAG-----GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 546 G A + + G GP+ VP +++ G +GE PG D G P A Sbjct: 600 KGPAGQGIDGPDGDQGPQGLPGVPGISKNGRDG-AQGEPGLPG----DPGTPGA 648
>ACSA_NITEU (Q82SI5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 655 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 279 DERTRHNCFMLFPRGLAITWSEDPKYWTWHPLKEGRPE 392 D T H+ + G ITW + +W WH L G+P+ Sbjct: 215 DTATVHSVIVFRHTGTGITWQPERDHW-WHDLIAGQPD 251
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 30.4 bits (67), Expect = 4.4 Identities = 30/104 (28%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Frame = +1 Query: 241 GSSWPGKQRSTGWTRGPGTTASCCSLE-AWPSPGAKTPSTGLGTP*KKEGRNRDGGAAER 417 GS PG G GP A WP A +P G GG A Sbjct: 49 GSMLPGLPYLQGAGSGPSNHAGGAGAHPGWPQASADSPPYG-------------GGGAAG 95 Query: 418 LLAGGPREAGAVPSHARSHL-----RGLLRGEARRPGLRVVDAG 534 A GP AG+ +HA + + G AR PG V G Sbjct: 96 GGAAGPGGAGSATAHASARFPYSPSPPMANGAARDPGGYVAAGG 139
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 30.4 bits (67), Expect = 4.4 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Frame = +1 Query: 253 PGKQRS---TGWTRGPGTTASCCSLEAWPSPGAKTPSTGL------GTP*KKEGRNRDGG 405 PG +S TG GT +L A P P +TP TGL + + G R G Sbjct: 424 PGDYKSPHVTGSGASAGTHKRMPALSATPVPADETPETGLKEKKHKASKRSRHGPGRPKG 483 Query: 406 AAERLLAGGPREAGAVPSHARSHLRG 483 + + GGP A PS + L G Sbjct: 484 SRNKEGTGGP----AAPSLPSAQLAG 505
>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1| Length = 657 Score = 30.0 bits (66), Expect = 5.8 Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Frame = +1 Query: 181 RSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEA--WPSPGAKTPS 354 RS G SPT P G PG W + PGT A+ +A P PG P+ Sbjct: 47 RSPDGPASPT------SGPVGR--PGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPA 98 Query: 355 TG---LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRG 495 LG GR R E+ R +GA P R+ +R L RG Sbjct: 99 NWGYVLG------GRGRGPDEYEK------RYSGAFPPQLRAQMRDLARG 136
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 30.0 bits (66), Expect = 5.8 Identities = 38/130 (29%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Frame = +1 Query: 181 RSSPGRMSPT*PRWKI-----RSPPGSSWPGKQRSTG--WTRGP-GTTASCCSLEAWPSP 336 + G + P PR R PPG PG G RGP G T P Sbjct: 1553 KGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPP 1612 Query: 337 GAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGL--LRGEARRP 510 G K G P R RDG E+ G P + G LRG +RG Sbjct: 1613 GEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEK 1672 Query: 511 GLRVVDAGEP 540 G D G+P Sbjct: 1673 G----DQGDP 1678
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.6 bits (65), Expect = 7.6 Identities = 34/123 (27%), Positives = 43/123 (34%), Gaps = 1/123 (0%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 369 PG + P + K+ P +PG+Q G PG PGA G GT Sbjct: 855 PGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 902 Query: 370 P*KKEGRNRDGGAAERLLAGGPR-EAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 546 P K R + G GPR E G RG +PG + G+ PA Sbjct: 903 PGKPGPRGQRGPT-------GPRGERGP-------------RGITGKPGPKGNSGGDGPA 942 Query: 547 QVP 555 P Sbjct: 943 GPP 945
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 29.6 bits (65), Expect = 7.6 Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTP--STGL 363 PG P + SP PG+ + G G T A +PGA P S G Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG------AVGAPGAPGPPGSPGP 1009 Query: 364 GTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLR 519 P K+G + GA + GP AGA RG +GEA PG R Sbjct: 1010 AGPTGKQGDRGEAGAQGPMGPSGP--AGARGIQGPQGPRG-DKGEAGEPGER 1058
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.6 bits (65), Expect = 7.6 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 19/104 (18%) Frame = +1 Query: 214 PRWKIRSPPGSSWPGKQRSTGWTRG------PGTTASCCSLEAWPSP---GAKTPSTG-- 360 P W + S PG+S G T +G P T S +L + SP A++PS G Sbjct: 446 PDWMVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRH 505 Query: 361 --------LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHAR 468 G P G RDG A +GGP G++ S R Sbjct: 506 PEDAKRQPRGRP-SSSGTPRDGPAGGTGGSGGP--GGSLGSRGR 546
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 29.6 bits (65), Expect = 7.6 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Frame = +1 Query: 190 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTP--STGL 363 PG P + SP PG+ + G G T A +PGA P S G Sbjct: 957 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG------ALGAPGAPGPPGSPGP 1010 Query: 364 GTP*KKEGRNRDGGAAERLLAGGPREAGAV--PSHARSHLRGLLRGEARRPGLR 519 P K+G + GA + GP A + P R +GEA PG R Sbjct: 1011 AGPTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGD-----KGEAGEPGER 1059
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 9.9 Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 11/123 (8%) Frame = +1 Query: 178 GRSSPGRMSPT*PRWKIRSP-----PGSSWPGKQRSTGWTRGP----GTTASCCSLEAWP 330 G+ PG P + P PGS P ++ GP G S + Sbjct: 420 GKGGPGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRG 479 Query: 331 SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAG--GPREAGAVPSHARSHLRGLLRGEAR 504 PG + P LG P K+ R G A R +G GP+ P + RG GE Sbjct: 480 LPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-TPGEKG 538 Query: 505 RPG 513 PG Sbjct: 539 EPG 541
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 29.3 bits (64), Expect = 9.9 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Frame = +1 Query: 229 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPS----PGAKTPSTGLGTP*KKEGRNR 396 + PGS P ++ GP A + PG + P LG P K+ R Sbjct: 432 KGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491 Query: 397 DGGAAERLLAG--GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAG 534 G A R +G GP+ P + RG GE PG R + G Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGG 538
>SBCD_BORBU (O51769) Exonuclease sbcD homolog| Length = 413 Score = 29.3 bits (64), Expect = 9.9 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 165 PHMLREIVAGENVTDVAALEDQVTAGIFLAGKTKKY 272 PH+ ++ G+N ++ LEDQ ++ +FL Y Sbjct: 135 PHINERLILGQNFDNIFGLEDQYSSKLFLENLENAY 170
>DAMX_ECOLI (P11557) Protein damX| Length = 428 Score = 29.3 bits (64), Expect = 9.9 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 187 SPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKT 348 +P R P P ++P +S P + + T P TAS A P+ GAKT Sbjct: 282 TPKRTEPAAPVASTKAPAATSTPAPKETA--TTAPVQTASPAQTTATPAAGAKT 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,903,757 Number of Sequences: 219361 Number of extensions: 1691053 Number of successful extensions: 5558 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 5179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5542 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
