>DPOD2_ORYSA (Q9LRE5) DNA polymerase delta small subunit (EC 2.7.7.7)|
          Length = 429

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 511 TRVEKPLREQDIPRALS*QAL*S*NCP*CQDPANHSLPQQVIYRIL 648
           +R+ +P++E DI       +L     P   DPAN SLPQQ ++R L
Sbjct: 241 SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCL 286

>SYL_PROMA (Q7VBZ5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 870

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 455 NRDLMPIQSQFDNLIREGSLEWRNLCENKTYRERFPDKHFDLETVLDAKT 604
           NR L+ I+  F NL+ +G ++       KT +   PD   D+ T LD +T
Sbjct: 567 NRGLLNIKEPFSNLLTQGMVQGVTFKNPKTSKYISPDHINDINTPLDPET 616

>UL14_HCMVA (P16756) Hypothetical protein UL14 precursor|
          Length = 327

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 528 RFLHSSDPSRIRLSNCDWIGIRSR 457
           R+L + DPSR+R  NC W G R R
Sbjct: 181 RYLWTPDPSRLRSINCGWEGERHR 204

>GLH3_CAEEL (O01836) ATP-dependent RNA helicase glh-3 (EC 3.6.1.-) (Germline|
           helicase 3)
          Length = 720

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 557 FPDKHFDLETVLDAKTRPITVSPSKSFIGFFVPE 658
           F DK FD    L ++ +P+T+ P KSF    +P+
Sbjct: 274 FFDKFFDASVQLVSRGQPVTIQPCKSFSDSDIPQ 307

>RPOA_PRRSL (Q04561) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3859

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 200  DDHSQCRHLPLLHLLSSTEVHL*PLVTVNPVSSFSREGY-SVLQLATQFPQQLMTVVALH 24
            D+   C HL +L LLS T     PLV +  +      G+ S   +  Q PQ+ +T +   
Sbjct: 3266 DEAGYCNHLDILRLLSKT-----PLVCLGDLQQLHPVGFDSYCYVFDQMPQKQLTTIYRF 3320

Query: 23   G 21
            G
Sbjct: 3321 G 3321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,772,597
Number of Sequences: 219361
Number of extensions: 2134830
Number of successful extensions: 5959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5958
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)