ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal32b19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL355482.13| Human DNA sequence from clone RP11-538D16 on ch... 52 7e-04
2gb|BT017400.1| Zea mays clone EL01N0328H09.c mRNA sequence 44 0.17
3emb|AL390209.1| Human DNA sequence from clone CTA-437G10 on chro... 42 0.66
4dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 0.66
5gb|AC004032.7| Homo sapiens Chromosome 22q11.2 BAC Clone b437g10... 42 0.66
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.6
7gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.6
8ref|XM_500189.1| Yarrowia lipolytica CLIB122, YALI0A18139g.1 pre... 40 2.6
9gb|AC134517.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
10emb|AL137798.8| Human DNA sequence from clone RP5-1182A14 on chr... 40 2.6
11emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 o... 40 2.6
12gb|AC005908.1| Homo sapiens 12p13.3 BAC RPCI11-476M19 (Roswell P... 40 2.6
13dbj|AK125333.1| Homo sapiens cDNA FLJ43343 fis, clone NT2RI3008055 40 2.6
14gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.6
15gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
19emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 2.6

>emb|AL355482.13| Human DNA sequence from clone RP11-538D16 on chromosome 1q25.1-31.3
             Contains the gene for a protein similar to zinc finger
             protein 135 (clone pHZ-17) zinc finger protein 61
             (LOC127665) and two novel genes (LOC149157), complete
             sequence
          Length = 74515

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 78    aggagtccttcgtgacattgaggcct 103
             ||||||||||||||||||||||||||
Sbjct: 35850 aggagtccttcgtgacattgaggcct 35875



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>gb|BT017400.1| Zea mays clone EL01N0328H09.c mRNA sequence
          Length = 1152

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 150 cggaggtggagaagaaggtgtgcctggtga 179
           |||||||||||||||||||| | |||||||
Sbjct: 784 cggaggtggagaagaaggtgaggctggtga 813



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>emb|AL390209.1| Human DNA sequence from clone CTA-437G10 on chromosome 22q11.2-12.3,
             complete sequence
          Length = 71200

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ggaggtggagaagaaggtgtg 171
             |||||||||||||||||||||
Sbjct: 21585 ggaggtggagaagaaggtgtg 21605



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     tcgtgacattgaggcctccgc 107
              |||||||||||||||||||||
Sbjct: 266529 tcgtgacattgaggcctccgc 266509



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>gb|AC004032.7| Homo sapiens Chromosome 22q11.2 BAC Clone b437g10 In BCRL2-GGT Region,
             complete sequence
          Length = 200685

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ggaggtggagaagaaggtgtg 171
             |||||||||||||||||||||
Sbjct: 21579 ggaggtggagaagaaggtgtg 21599



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     cggaggtggagaagaaggtg 169
               ||||||||||||||||||||
Sbjct: 5855642 cggaggtggagaagaaggtg 5855623



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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   cggaggtggagaagaaggtg 169
             ||||||||||||||||||||
Sbjct: 84472 cggaggtggagaagaaggtg 84453



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>ref|XM_500189.1| Yarrowia lipolytica CLIB122, YALI0A18139g.1 predicted mRNA
          Length = 2349

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  ggaggtggagaagaaggtgt 170
            ||||||||||||||||||||
Sbjct: 1815 ggaggtggagaagaaggtgt 1834



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>gb|AC134517.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1325D05,
              complete sequence
          Length = 136214

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gacggaggtggagaagaagg 167
              ||||||||||||||||||||
Sbjct: 108220 gacggaggtggagaagaagg 108239



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>emb|AL137798.8| Human DNA sequence from clone RP5-1182A14 on chromosome 1 Contains the
             5' end of a novel gene, a novel gene, a macrophage
             stimulating 1 (hepatocyte growth factor-like)(MST1)
             pseudogene and three CpG islands, complete sequence
          Length = 146141

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gcggcgcccccgcgctgtcc 139
             ||||||||||||||||||||
Sbjct: 18757 gcggcgcccccgcgctgtcc 18776



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>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21
             Contains a novel pseudogene, a eukaryotic translation
             initiation factor 1A pseudogene 1 (EIF1AP1), part of a
             novel gene (LOC284729), a macrophage stimulating 1
             (hepatocyte growth factor-like)(MST1) pseudogene and five
             CpG islands, complete sequence
          Length = 118067

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcggcgcccccgcgctgtcc 139
             ||||||||||||||||||||
Sbjct: 12410 gcggcgcccccgcgctgtcc 12391



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>gb|AC005908.1| Homo sapiens 12p13.3 BAC RPCI11-476M19 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 196501

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgcccctttcagcagcaacg 200
             ||||||||||||||||||||
Sbjct: 62617 cgcccctttcagcagcaacg 62598



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>dbj|AK125333.1| Homo sapiens cDNA FLJ43343 fis, clone NT2RI3008055
          Length = 5978

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cgcccctttcagcagcaacg 200
            ||||||||||||||||||||
Sbjct: 2406 cgcccctttcagcagcaacg 2387



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>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0015I18, from chromosome 10, complete sequence
          Length = 161479

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    gacggaggtggagaagaagg 167
              ||||||||||||||||||||
Sbjct: 129474 gacggaggtggagaagaagg 129455



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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  cggaggtggagaagaaggtg 169
            ||||||||||||||||||||
Sbjct: 5264 cggaggtggagaagaaggtg 5245



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     gacggaggtggagaagaagg 167
               ||||||||||||||||||||
Sbjct: 9236943 gacggaggtggagaagaagg 9236962



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     cggaggtggagaagaaggtg 169
               ||||||||||||||||||||
Sbjct: 5854855 cggaggtggagaagaaggtg 5854836



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     gacggaggtggagaagaagg 167
               ||||||||||||||||||||
Sbjct: 9242082 gacggaggtggagaagaagg 9242101



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     ggaggtggagaagaaggtgt 170
               ||||||||||||||||||||
Sbjct: 1885159 ggaggtggagaagaaggtgt 1885140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,539,405
Number of Sequences: 3902068
Number of extensions: 1539405
Number of successful extensions: 109102
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108737
Number of HSP's gapped (non-prelim): 365
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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