>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B (eIF-5B)|
           (Translation initiation factor IF-2)
          Length = 1002

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 234 HSEKEIITINDHSYEAI-SDAKSSPEVTTDRELVVSSHQVVDDTE 365
           +S+K+  T  +++ EAI SD+K   EV  D EL  S   ++DD E
Sbjct: 281 YSKKKKRTTQENASEAIKSDSKKDSEVVPDDELKESEDVLIDDWE 325

>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein; Coat|
            protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa
            protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3);
            Putative helicase (EC 3.6.1.-) (Putative NTP-binding
            protei
          Length = 3471

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 246  EIITINDHSYEAISDAKSSPEVTTDRELVVSSHQVVDDTERRPQPSERGLVGTS 407
            E++  + H Y+ I +   + ++ TDR+       +VD T+        GLVG++
Sbjct: 1337 ELVASDSHMYKCIKNMNKNVKILTDRQCTAKLADIVDSTQ--------GLVGSN 1382

>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 201 DTEFAGGNSLEHSEKEIITINDHSYEAISDAKSSPEVTTDRELVVSSHQVVDDTERRPQP 380
           D+E +  +S   SE+    ++     AI D ++ PE  TD E+     +      R  +P
Sbjct: 289 DSEGSEDDSWSESEESSSGLSTSDLTAIDDTETEPE--TDAEVESRRTRGASGAARARRP 346

Query: 381 SERGLVGTSG 410
           +ER  V T G
Sbjct: 347 AERQYVSTRG 356

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 201 DTEFAGGNSLEHSEKEIITINDHSYEAISDAKSSPEVTTDRELVVSSHQVVDDTERRPQP 380
           D+E +  +S   SE+    ++     AI D ++ PE  TD E+     +      R  +P
Sbjct: 289 DSEGSEDDSWSESEESSSGLSTSDLTAIDDTETEPE--TDAEVESRRTRGASGAARARRP 346

Query: 381 SERGLVGTSG 410
           +ER  V T G
Sbjct: 347 AERQYVSTRG 356

>PCDC1_HUMAN (Q9H158) Protocadherin alpha C1 precursor (PCDH-alpha-C1)|
          Length = 963

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 258 INDHSYEAISDAKSSPEVTTDRELVVSSHQVVDDTERRPQPSERGLVGTSGHP 416
           I+++     +    SP ++T R + VS   V D+T   PQP +   V  +  P
Sbjct: 408 ISEYQVLITASDSGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGP 460

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 225  SLEHSEKEIITINDHSYEAISDAKSSP---EVTTDRELVVSSHQVVDDTERRPQPSERGL 395
            S E S +E I       E+  D KS+P   E +    +V S   V D+TE+  +PS R  
Sbjct: 1557 SKEPSRRESIA-ESLKAESTKDEKSAPPSKEASRPGSVVES---VKDETEKSKEPSRRES 1612

Query: 396  VGTSGHPP 419
            +  S  PP
Sbjct: 1613 IAESAKPP 1620

>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1) (170 kDa glucose-regulated
           protein)
          Length = 999

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = +3

Query: 210 FAGGNSLEHSEKEIITINDHSYEAISDAKSSPEVTTDRELVVSSHQVVDDTERRPQPSER 389
           F GG S +  E     + +        +K  P    D  L   +   V+DT + P P  +
Sbjct: 585 FGGGTSSDAKENGTDAVQEEEESPTEGSKDEPGEQGD--LKEETEAPVEDTSQPPPPEPK 642

Query: 390 GLVGTSGHPPE 422
           G     G  P+
Sbjct: 643 GDAAPEGEKPD 653


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,027,329
Number of Sequences: 219361
Number of extensions: 834284
Number of successful extensions: 2325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)