>YABD_BACSU (P37545) Putative deoxyribonuclease yabD (EC 3.1.21.-)|
          Length = 255

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 28/106 (26%), Positives = 41/106 (38%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTS 181
           +T   + K K++VK IP DR+L+ETD P   P                            
Sbjct: 178 VTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPH--------------------------- 210

Query: 182 QAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 319
                     N P+ +  V + +A L EM   E+A  +  NA +LF
Sbjct: 211 ----PFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLF 252

>YBF5_YEAST (P34220) Putative deoxyribonuclease YBL055c (EC 3.1.21.-)|
          Length = 418

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
 Frame = +2

Query: 35  MVKAIPLDRILLETDAPDAVPKLDNVS--PVTVPLDTSDADTEKSHSDSTSQAAASSN-- 202
           +VK IP +R+LLETDAP    K  + S   +    +  D +     S   ++ A   N  
Sbjct: 313 VVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAE 372

Query: 203 -----ESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 319
                +  N P N+  V   V+ + ++  A L +T+++   K+F
Sbjct: 373 ELYMVKGRNEPCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIF 416

>TATD2_HUMAN (Q93075) TatD DNase domain-containing deoxyribonuclease 2 (EC|
           3.1.21.-)
          Length = 761

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVPK 100
           LT   + +A++ ++ IPL+RI++ETDAP  +P+
Sbjct: 682 LTYSSAWEAREALRQIPLERIIVETDAPYFLPR 714

>POLN_FCVUR (Q66914) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1763

 Score = 32.7 bits (73), Expect = 0.83
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +2

Query: 92  VPKLDNVSPV-TVPLDTSDADTEKSHSDSTSQAAASSNESLN---HPANIHIVLKYVASL 259
           +P  ++V+   T  L  S+  +++ H D     AA   ++L+   HPAN+ +  + + SL
Sbjct: 75  IPSWEDVTKTSTYSLLLSEDTSDELHPDDLVNVAAHIRKALSTQSHPANVDMCKEQLTSL 134

Query: 260 LEMPEAELAETS 295
           L M EA L + S
Sbjct: 135 LVMAEAMLPQRS 146

>Y325_BUCBP (Q89AG7) Putative deoxyribonuclease bbp_325 (EC 3.1.21.-)|
          Length = 265

 Score = 32.7 bits (73), Expect = 0.83
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
 Frame = +2

Query: 5   TGMKSTKAKKMV----KAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSD 172
           +G+ + K  K+V    K +P+DRIL+ETD+P   P         VP    +         
Sbjct: 178 SGIVTFKNSKIVHETAKFVPIDRILIETDSPYLSP---------VPYRGIE--------- 219

Query: 173 STSQAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLFSYP 328
                        N PA ++  + Y+A L  M     A  + +N  KLF+ P
Sbjct: 220 -------------NQPAYLYDTMLYIAQLKNMSPECFAIQTTKNFLKLFNLP 258

>YCFH_ECOLI (P0AFQ7) Putative deoxyribonuclease ycfH (EC 3.1.21.-)|
          Length = 265

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/113 (23%), Positives = 46/113 (40%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTS 181
           +T   + + +   + +PLDR+L+ETD+P   P         VP    +            
Sbjct: 180 VTFRNAEQLRDAARYVPLDRLLVETDSPYLAP---------VPHRGKE------------ 218

Query: 182 QAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 340
                     N PA +  V +Y+A L  +   ELA+ +  N  +LF    S++
Sbjct: 219 ----------NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261

>YCFH_ECOL6 (P0AFQ8) Putative deoxyribonuclease ycfH (EC 3.1.21.-)|
          Length = 265

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/113 (23%), Positives = 46/113 (40%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTS 181
           +T   + + +   + +PLDR+L+ETD+P   P         VP    +            
Sbjct: 180 VTFRNAEQLRDAARYVPLDRLLVETDSPYLAP---------VPHRGKE------------ 218

Query: 182 QAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 340
                     N PA +  V +Y+A L  +   ELA+ +  N  +LF    S++
Sbjct: 219 ----------NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261

>YCFH_ECO57 (P0AFQ9) Putative deoxyribonuclease ycfH (EC 3.1.21.-)|
          Length = 265

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/113 (23%), Positives = 46/113 (40%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTS 181
           +T   + + +   + +PLDR+L+ETD+P   P         VP    +            
Sbjct: 180 VTFRNAEQLRDAARYVPLDRLLVETDSPYLAP---------VPHRGKE------------ 218

Query: 182 QAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLFSYPGSKV 340
                     N PA +  V +Y+A L  +   ELA+ +  N  +LF    S++
Sbjct: 219 ----------NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261

>Y1582_METJA (Q58977) Putative deoxyribonuclease MJ1582 (EC 3.1.21.-)|
          Length = 249

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 149 DTEKSHSDSTSQAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 319
           D E   +++ S   +    + N P N+ +V++ +A + EM   E+ +  Y+N  K F
Sbjct: 189 DLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKNTCKFF 245

>VCAP_HHV6U (P17887) Major capsid protein (MCP)|
          Length = 1345

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
 Frame = -2

Query: 578 DTATYVETRVIIWQHSSYEPLS-HFFLTATYL----------VLDRLYNYNNIHTVYRQH 432
           D     ET +++ +HS   P++  F L+A  L          V+D++ N N +HTV R  
Sbjct: 105 DVTASKETTIMVAKHSEKHPINISFDLSAACLEHLENTFKNTVIDQILNINALHTVLRSL 164

Query: 431 QAERTRISMSMVHVRRP----PAPPQITQLQL 348
           +     +   ++H         +PPQ   L +
Sbjct: 165 KNSADSLERGLIHAFMQTLLRKSPPQFIVLTM 196

>YA9A_SCHPO (Q09788) Hypothetical serine-rich protein C13G6.10c precursor|
          Length = 530

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +2

Query: 101 LDNV-----SPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPA-NIHIVLKYVASLL 262
           +DNV     S  +VP+ T +     S    TS  A SS  S ++PA +  +   Y AS  
Sbjct: 118 MDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASST 177

Query: 263 EMPEAELAETSYRNATKLFSYPGS 334
           E+  +  A +    +T  +  P S
Sbjct: 178 EVTSSYPASSEVATSTSSYVAPVS 201

>PHK_NITEU (Q82T07) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 790

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 39  SKQYPWTEFC*RQMHQMQYQSWTMFLQSQSLWTLQMRILKSLTAIRPLRRLPLQTNP 209
           S Q P +E   +  H  Q ++W    + + L+  Q R+++ L  + PL    +  NP
Sbjct: 307 SHQVPLSELAKKPEHIQQLEAWLRSYRPEELFDTQGRLVEPLQTLAPLGNRRMGANP 363

>PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)|
          Length = 603

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 191 ASSNESLNHPANIHIVLKYVASLLEMPEAELAET--SYRNATKLFSYPGSKVHHEAEAG* 364
           AS+ E  N P  ++++ K+V  +L    A +AET  S+ N  KL    G     + + G 
Sbjct: 395 ASAGEEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 454

Query: 365 FG 370
            G
Sbjct: 455 IG 456

>Y081_HAEIN (P44500) Putative deoxyribonuclease HI0081 (EC 3.1.21.-)|
          Length = 262

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPD 88
           +T  ++ K ++ +  +PLD ++LETD+PD
Sbjct: 187 ITYERANKTRQAIAKLPLDALVLETDSPD 215

>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)|
           (BRCA1-associated protein 1) (Cerebral protein 6)
          Length = 729

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 71  ETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNH--PANIHIVLK 244
           E+  P+      N SP+ +  + + A +E +H+D   +AA S  ++ +H  P    +V+K
Sbjct: 278 ESQLPEESKSASNKSPLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVK 337

Query: 245 YVASLL 262
              S L
Sbjct: 338 PPGSSL 343

>YJJV_ECOLI (P39408) Putative deoxyribonuclease yjjV (EC 3.1.21.-)|
          Length = 259

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPD 88
           +T  +++K + ++  +PL  +LLETDAPD
Sbjct: 182 ITYPRASKTRDVIAKLPLASLLLETDAPD 210

>Y504_CHLTR (O84512) Protein CT_504|
          Length = 288

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 11  MKSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSP-VTVPLDTSDADTEKSHSDSTSQA 187
           M+   AK  +KA+ LDR +    + +A+ K+  V+P V+V  D +    E+  +DST  A
Sbjct: 69  MEIRDAKINLKAVGLDRGVKIVGSREALLKMPKVAPIVSVSEDNTIVSEEEVVADSTVAA 128

Query: 188 AASS 199
            AS+
Sbjct: 129 PAST 132

>Y343_BUCAP (Q8K9J1) Putative deoxyribonuclease BUsg343 (EC 3.1.21.-)|
          Length = 264

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVP 97
           +T  KS +    +K IPL+++L+ETD+P   P
Sbjct: 186 ITFKKSIELCNTLKKIPLEKLLIETDSPYLAP 217

>GLNA_SULAC (Q9HH09) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 473

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 319 LLPWIQGSPRS*SWVIWGGAGGR 387
           L+PW+QG  R  + V WGG  GR
Sbjct: 83  LIPWMQGVARVLTKVFWGGGKGR 105

>EP84_HCMVA (P17151) Early phosphoprotein p84|
          Length = 684

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +2

Query: 119 VTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPANIHIVLKYVA---SLLEMP---EAE 280
           +++PLDTS+A    ++S S+S  ++SSN   +H  + + V    A     L +P    A 
Sbjct: 298 MSLPLDTSEAVAFLNYSSSSSAVSSSSNNHHHHHHHHNAVTDVAAGTDGALLLPIERGAV 357

Query: 281 LAETSYRNATKLFSYPGSKVHHEA 352
           ++  S  + + L S P     H A
Sbjct: 358 VSSPSSTSPSSLLSLPRPSSAHSA 381

>Y355_BUCAI (P57436) Putative deoxyribonuclease BU355 (EC 3.1.21.-)|
          Length = 264

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 2   LTGMKSTKAKKMVKAIPLDRILLETDAPDAVP 97
           +T   S +  K ++ IPL+R+L+ETD+P   P
Sbjct: 188 ITFKNSLELCKTIRKIPLNRLLIETDSPYLSP 219

>TATD_ECOLI (P27859) Deoxyribonuclease tatD (EC 3.1.21.-) (DNase tatD)|
          Length = 260

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/102 (23%), Positives = 45/102 (44%)
 Frame = +2

Query: 14  KSTKAKKMVKAIPLDRILLETDAPDAVPKLDNVSPVTVPLDTSDADTEKSHSDSTSQAAA 193
           +  + ++++  IP +++L+ETDAP  +P+                       D T + ++
Sbjct: 182 RGLELRELLPLIPAEKLLIETDAPYLLPR-----------------------DLTPKPSS 218

Query: 194 SSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 319
             NE    PA++  +L+ +A       A LA T+  N   LF
Sbjct: 219 RRNE----PAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 256

>Y017_UREPA (Q9PRC8) Putative deoxyribonuclease UU017 (EC 3.1.21.-)|
          Length = 265

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  VKAIPLDRILLETDAPDAVP 97
           +K  PLD+IL+ETDAP   P
Sbjct: 199 IKITPLDKILVETDAPYLTP 218

>VCAP_HHV7J (P52347) Major capsid protein (MCP)|
          Length = 1345

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
 Frame = -2

Query: 578 DTATYVETRVIIWQHSSYEP-----------LSHFFLTATYLVLDRLYNYNNIHTVYRQH 432
           D     ET V++ ++S   P           L+H   T    +LD++ N N IHTV R  
Sbjct: 105 DVTAPKETTVLVTKYSEKHPINISFELSAACLAHLENTFKNTILDQMLNINAIHTVLRSL 164

Query: 431 QAERTRISMSMVH----VRRPPAPPQ 366
           +     +   +++         APPQ
Sbjct: 165 KNSADSLQRGLIYAFIKTILKKAPPQ 190

>NQRB_CHLTR (O84280) Probable Na(+)-translocating NADH-quinone reductase|
           subunit B (EC 1.6.5.-) (Na(+)-translocating NQR subunit
           B) (Na(+)-NQR subunit B) (NQR complex subunit B) (NQR-1
           subunit B)
          Length = 503

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 107 NVSPVTVPLDTSDADTEKSHSDSTSQAAASSNESLNHPA--NIHI--VLKYVASLLEMPE 274
           N S +   L T  +  EKSH D  SQ+      +   P+   +HI  +   + +L  +P 
Sbjct: 221 NPSRIKESLATMSSLAEKSHFDGFSQSTCLQVLNSTPPSVKRVHIDAIASNILNLEHVPT 280

Query: 275 AELAETSYRNATKLFSYPGSKV 340
            ++ +T +  AT   SYPG  V
Sbjct: 281 QDVLQTQF--ATWAESYPGLTV 300

>SHC1_HUMAN (P29353) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 583

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 386 RPPAPPQITQL--QLRGEPWIQG 324
           R P PPQ   +  QLRGEPW  G
Sbjct: 469 RVPPPPQSVSMAEQLRGEPWFHG 491

>FUT13_ARATH (Q9C8W3) Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M)|
           (Galactoside 3(4)-L-fucosyltransferase) (FucTC)
           (AtFUT13)
          Length = 401

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 365 FGVGRVAVEHEPCSSKSWCVLPDVVCILYVCYC 463
           FG G++ ++H     K W  +PD +  LY C C
Sbjct: 94  FGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRC 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,257,898
Number of Sequences: 219361
Number of extensions: 1664256
Number of successful extensions: 5007
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4999
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)