ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal31i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189605.2| Oryza sativa (japonica cultivar-group), mRNA 94 1e-16
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 1e-16
3dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 94 1e-16
4dbj|AK102544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-16
5dbj|AK073377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-16
6gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 0.33
7gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 1.3
8gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 5.1
9gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 5.1
10gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 38 5.1
11emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 38 5.1
12emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 5.1
13gb|AY028431.1| Burkholderia cepacia genomovar III putative type ... 38 5.1
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 38 5.1
15emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 5.1
16gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 5.1 
>ref|NM_189605.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1063

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaagcccnagcccttcaagccgccgcccttcgcccccagggtcgacgccgacgagcagcc 61
           ||||||  |||| |||||||||||| | | ||| |||| |||||||||||||||||||||
Sbjct: 145 gaagccggagccgttcaagccgccggcgtacgcgcccaaggtcgacgccgacgagcagcc 204

                                                 
Query: 62  caggtccaaggagtggctcgacgcgcgcgaccccgacg 99
           || ||||||||| |||||||||| ||| || |||||||
Sbjct: 205 caagtccaaggaatggctcgacgagcgggagcccgacg 242
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                           
Query: 2       gaagcccnagcccttcaagccgccgcccttcgcccccagggtcgacgccgacgagcagcc 61
               ||||||  |||| |||||||||||| | | ||| |||| |||||||||||||||||||||
Sbjct: 4496450 gaagccggagccgttcaagccgccggcgtacgcgcccaaggtcgacgccgacgagcagcc 4496391

                                                     
Query: 62      caggtccaaggagtggctcgacgcgcgcgaccccgacg 99
               || ||||||||| |||||||||| ||| || |||||||
Sbjct: 4496390 caagtccaaggaatggctcgacgagcgggagcccgacg 4496353
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 2     gaagcccnagcccttcaagccgccgcccttcgcccccagggtcgacgccgacgagcagcc 61
             ||||||  |||| |||||||||||| | | ||| |||| |||||||||||||||||||||
Sbjct: 31137 gaagccggagccgttcaagccgccggcgtacgcgcccaaggtcgacgccgacgagcagcc 31078

                                                   
Query: 62    caggtccaaggagtggctcgacgcgcgcgaccccgacg 99
             || ||||||||| |||||||||| ||| || |||||||
Sbjct: 31077 caagtccaaggaatggctcgacgagcgggagcccgacg 31040
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>dbj|AK102544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096N05, full
           insert sequence
          Length = 1063

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaagcccnagcccttcaagccgccgcccttcgcccccagggtcgacgccgacgagcagcc 61
           ||||||  |||| |||||||||||| | | ||| |||| |||||||||||||||||||||
Sbjct: 145 gaagccggagccgttcaagccgccggcgtacgcgcccaaggtcgacgccgacgagcagcc 204

                                                 
Query: 62  caggtccaaggagtggctcgacgcgcgcgaccccgacg 99
           || ||||||||| |||||||||| ||| || |||||||
Sbjct: 205 caagtccaaggaatggctcgacgagcgggagcccgacg 242
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>dbj|AK073377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028G17, full
           insert sequence
          Length = 1070

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaagcccnagcccttcaagccgccgcccttcgcccccagggtcgacgccgacgagcagcc 61
           ||||||  |||| |||||||||||| | | ||| |||| |||||||||||||||||||||
Sbjct: 151 gaagccggagccgttcaagccgccggcgtacgcgcccaaggtcgacgccgacgagcagcc 210

                                                 
Query: 62  caggtccaaggagtggctcgacgcgcgcgaccccgacg 99
           || ||||||||| |||||||||| ||| || |||||||
Sbjct: 211 caagtccaaggaatggctcgacgagcgggagcccgacg 248
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     ggagtggctcgacgcgcgcga 91
              |||||||||||||||||||||
Sbjct: 403041 ggagtggctcgacgcgcgcga 403061
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     tcgacgcgcgcgaccccgac 98
              ||||||||||||||||||||
Sbjct: 866599 tcgacgcgcgcgaccccgac 866580
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 44      cgacgccgacgagcagccc 62
               |||||||||||||||||||
Sbjct: 3052616 cgacgccgacgagcagccc 3052634
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 44      cgacgccgacgagcagccc 62
               |||||||||||||||||||
Sbjct: 1751419 cgacgccgacgagcagccc 1751401
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 77      gctcgacgcgcgcgaccccgacg 99
               ||||||||||||||||| |||||
Sbjct: 1296368 gctcgacgcgcgcgaccacgacg 1296390
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 44      cgacgccgacgagcagccc 62
               |||||||||||||||||||
Sbjct: 3086312 cgacgccgacgagcagccc 3086294
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 72      gagtggctcgacgcgcgcgaccc 94
               |||||||||||||||| ||||||
Sbjct: 2399722 gagtggctcgacgcgctcgaccc 2399744
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>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene
             cluster, complete sequence
          Length = 34600

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    gtggctcgacgcgcgcgac 92
             |||||||||||||||||||
Sbjct: 23940 gtggctcgacgcgcgcgac 23922
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 44      cgacgccgacgagcagccc 62
               |||||||||||||||||||
Sbjct: 2234938 cgacgccgacgagcagccc 2234920
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 74      gtggctcgacgcgcgcgac 92
               |||||||||||||||||||
Sbjct: 2545454 gtggctcgacgcgcgcgac 2545436
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 72      gagtggctcgacgcgcgcg 90
               |||||||||||||||||||
Sbjct: 1943030 gagtggctcgacgcgcgcg 1943048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 484,478
Number of Sequences: 3902068
Number of extensions: 484478
Number of successful extensions: 38314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36697
Number of HSP's gapped (non-prelim): 1617
length of query: 113
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 92
effective length of database: 17,151,101,840
effective search space: 1577901369280
effective search space used: 1577901369280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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