ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal31i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ010830.1|TSP010830 Triticum sp. mRNA for GRAB2 protein 105 6e-20
2ref|XM_309164.2| Anopheles gambiae str. PEST ENSANGP00000018738 ... 44 0.20
3gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 0.80
4ref|XM_527544.1| PREDICTED: Pan troglodytes RNA-binding motif pr... 40 3.2
5gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.2
6gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 3.2
7gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.2
8emb|AL591499.7| Human DNA sequence from clone RP11-15G8 on chrom... 40 3.2
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.2
10emb|Y19177.1|SAN19177 Streptomyces antibioticus polyketide biosy... 40 3.2
11emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.2
12emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.2
13emb|AJ311709.1|CGL311709 Colletotrichum gloeosporioides cat gene... 40 3.2
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.2
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 3.2
16dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 3.2

>emb|AJ010830.1|TSP010830 Triticum sp. mRNA for GRAB2 protein
          Length = 1295

 Score =  105 bits (53), Expect = 6e-20
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                        
Query: 66   tgatgccgtcgtcgcggtcgtacgtngatctggagcagctgtgccggggcgagcctccca 125
            |||||||||| |||||||||||| | ||||||||| |||||| |||||||||||||| ||
Sbjct: 1076 tgatgccgtcatcgcggtcgtacctcgatctggaggagctgttccggggcgagcctctca 1135

                                
Query: 126  tggacttctccaacatgtgg 145
            |||||| |||||||||||||
Sbjct: 1136 tggactactccaacatgtgg 1155



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>ref|XM_309164.2| Anopheles gambiae str. PEST ENSANGP00000018738
           (ENSANGG00000016249), partial mRNA
          Length = 1644

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  gagcagctgtgccggggcgagc 119
           ||||||||||||||||||||||
Sbjct: 898 gagcagctgtgccggggcgagc 919



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 29      ggcgcgctcgccggcgccgcg 49
               |||||||||||||||||||||
Sbjct: 2268583 ggcgcgctcgccggcgccgcg 2268603



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>ref|XM_527544.1| PREDICTED: Pan troglodytes RNA-binding motif protein 16
           (LOC472167), mRNA
          Length = 5196

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 28  gggcgcgctcgccggcgccgcgga 51
           ||||||||| ||||||||||||||
Sbjct: 966 gggcgcgctggccggcgccgcgga 989



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      acgggcgcgctcgccggcgc 45
               ||||||||||||||||||||
Sbjct: 2101978 acgggcgcgctcgccggcgc 2101959



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     acgggcgcgctcgccggcgc 45
              ||||||||||||||||||||
Sbjct: 546245 acgggcgcgctcgccggcgc 546226



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      acgggcgcgctcgccggcgc 45
               ||||||||||||||||||||
Sbjct: 3485682 acgggcgcgctcgccggcgc 3485663



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 28      gggcgcgctcgccggcgccg 47
               ||||||||||||||||||||
Sbjct: 1555566 gggcgcgctcgccggcgccg 1555585



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>emb|AL591499.7| Human DNA sequence from clone RP11-15G8 on chromosome 6 Contains the 5'
             end of a novel gene (KIAA1116), a stathmin-like 2
             (Superiorcervical ganglia, neural specific 10 superior
             cervical ganglia, neural specific 10 neuronal
             growth-associated protein (silencer) (STMN2) (SCG10,
             SGC10, SCGN10) pseudogene and two CpG islands, complete
             sequence
          Length = 111864

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    gggcgcgctcgccggcgccgcgga 51
             ||||||||| ||||||||||||||
Sbjct: 78634 gggcgcgctagccggcgccgcgga 78657



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 24      acacgggcgcgctcgccggcgccg 47
               |||| |||||||||||||||||||
Sbjct: 1521485 acaccggcgcgctcgccggcgccg 1521508



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>emb|Y19177.1|SAN19177 Streptomyces antibioticus polyketide biosynthetic gene cluster
          Length = 7482

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   tcgccggcgccgcggacacc 55
            ||||||||||||||||||||
Sbjct: 3066 tcgccggcgccgcggacacc 3085



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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gggcgcgctcgccggcgccg 47
             ||||||||||||||||||||
Sbjct: 94350 gggcgcgctcgccggcgccg 94331



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      acgggcgcgctcgccggcgc 45
               ||||||||||||||||||||
Sbjct: 3226790 acgggcgcgctcgccggcgc 3226771



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 28      gggcgcgctcgccggcgccg 47
               ||||||||||||||||||||
Sbjct: 1442659 gggcgcgctcgccggcgccg 1442678



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>emb|AJ311709.1|CGL311709 Colletotrichum gloeosporioides cat gene for catalase, exons 1-4
          Length = 1919

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   cgggcgcgctcgccggcgcc 46
            ||||||||||||||||||||
Sbjct: 1568 cgggcgcgctcgccggcgcc 1587



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gcgcgctcgccggcgccgcg 49
              ||||||||||||||||||||
Sbjct: 822933 gcgcgctcgccggcgccgcg 822952



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     acgggcgcgctcgccggcgc 45
              ||||||||||||||||||||
Sbjct: 917727 acgggcgcgctcgccggcgc 917746



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 19     cttcgacacgggcgcgctcgccggcgcc 46
              |||||| ||||||||| |||||||||||
Sbjct: 223787 cttcgagacgggcgcggtcgccggcgcc 223760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,190,635
Number of Sequences: 3902068
Number of extensions: 1190635
Number of successful extensions: 27691
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26487
Number of HSP's gapped (non-prelim): 1204
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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