>YP65_CAEEL (Q09214) Hypothetical protein B0495.5|
          Length = 729

 Score =  115 bits (287), Expect = 2e-25
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 9/238 (3%)
 Frame = +1

Query: 1   WHVPILRRCCTTRGQIANAYLDTYVITGDEY--YSSVARDILDYLRRDMIGEDGEIFSAE 174
           WH+P   +    + Q+   Y D + +T  ++     V  DI  Y+++ +  +DG  ++AE
Sbjct: 277 WHIPHFEKMLYDQSQLLATYSDFHKLTERKHDNVKHVINDIYQYMQK-ISHKDGGFYAAE 335

Query: 175 DADSAEYEGDARKKEGSFYVWTSQEIEDTLGE----NAELFK---NHYYVKSSGNCDLSG 333
           DADS      + K EG+F  W  +EI+  LG+    +A LF    +++ V+ SGN   S 
Sbjct: 336 DADSLPNHNSSNKVEGAFCAWEKEEIKQLLGDKKIGSASLFDVVADYFDVEDSGNVARS- 394

Query: 334 MSDPHNEFSGKNVLIERKPGSLMASKYGKSVDEYYGILGECRQKLFDVRSKRPRPHLDDK 513
            SDPH E   KNVL +       A+ +  SV E    + E ++ L++ R++RP PHLD K
Sbjct: 395 -SDPHGELKNKNVLRKLLTDEECATNHEISVAELKKGIDEAKEILWNARTQRPSPHLDSK 453

Query: 514 VIVSWNGLAISAFARASQILKSGPPGTKFYFPVTGCDPVEYLQVAEKAANFIKEKLYD 687
           ++ SW GLAI+   +A Q                  +  +YL  AEK A FI + L D
Sbjct: 454 MVTSWQGLAITGLVKAYQ----------------ATEETKYLDRAEKCAEFIGKFLDD 495

>YYAL_BACSU (P37512) Hypothetical protein yyaL|
          Length = 689

 Score =  105 bits (263), Expect = 1e-22
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1   WHVPILRRCCTTRGQIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDA 180
           W VP   +       +  AY + Y +T +  Y  +   I+ +++R+M  EDG  FSA DA
Sbjct: 263 WLVPHFEKMLYDNALLLTAYTEAYQVTQNSRYKEICEQIITFIQREMTHEDGSFFSALDA 322

Query: 181 DSAEYEGDARKKEGSFYVWTSQEIEDTLGEN-AELFKNHYYVKSSGNCDLSGMSDPHNEF 357
           D+   EG+    EG +YVW+ +EI  TLG++   L+   Y +   GN            F
Sbjct: 323 DT---EGE----EGKYYVWSKEEILKTLGDDLGTLYCQVYDITEEGN------------F 363

Query: 358 SGKNV--LIERKPGSLMASKYGKSVDEYYGILGECRQKLFDVRSKRPRPHLDDKVIVSWN 531
            GKN+  LI  K   +     G +  E    L + RQ+L   R +R  PH+DDKV+ SWN
Sbjct: 364 EGKNIPNLIHTKREQIKEDA-GLTEKELSLKLEDARQQLLKTREERTYPHVDDKVLTSWN 422

Query: 532 GLAISAFARASQILKSGPPGTKFYFPVTGCDPVEYLQVAEKAANFIKEKL 681
            L I+  A+A+++ +                  +YL +A+ A  FI+ KL
Sbjct: 423 ALMIAGLAKAAKVYQE----------------PKYLSLAKDAITFIENKL 456

>NUCG_CAEEL (Q95NM6) Endonuclease G, mitochondrial precursor (EC 3.1.30.-)|
           (Endo G) (Ced-3 protease suppressor 6)
          Length = 308

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +1

Query: 43  QIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARKKEG 222
           ++A   +++Y+ITG  Y   +  D   Y++  +IG++           A +E    K E 
Sbjct: 193 RVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFEL 252

Query: 223 SFYVWTSQEIEDTLGENAELFKNHY---YVKSSGNCDLSGMSDP 345
             Y+  +  IEDT+    E+ K H     V+ S   ++    DP
Sbjct: 253 ESYILPNAVIEDTV----EISKFHVPLDAVERSAGLEIFARLDP 292

>CCA_SULSO (Q97Z92) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 412

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 70  YVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARK 213
           Y+  G +YYS    D +       +GEDG ++S ++    + E  A+K
Sbjct: 330 YLNIGPQYYSGTIEDFIQKNDNIWVGEDGRLYSIKERKEYDAETIAKK 377

>RPOA_TREDE (Q73PK8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 351

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +1

Query: 232 VWTSQEI--EDTLGENAELFKNHYYVKSSGN-CDLSGMSDPHNEFSGKNVLIERKPGSLM 402
           +WT   +  ED LGE A++ K+H+ +  + N  D  G  +  NE +    L+     +L 
Sbjct: 215 IWTDSTVRPEDVLGEAAKIAKDHFSIFINFNENDYLGEDEDDNEEAVIKQLLATSINTLD 274

Query: 403 ASKYGKSVDEYYGI--LGECRQKLFD 474
            S   K+  +  GI  LGE  QK  D
Sbjct: 275 FSVRAKNCLDSAGIKTLGELAQKSED 300

>SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains: Silaffin-1B;|
           Silaffin-1A2; Silaffin-1A1]
          Length = 265

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
 Frame = +1

Query: 166 SAEDADSAEYEGDARKKEGSFYVWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSGMSDP 345
           S+ED++  E    + KK GS+Y + +++     G + +   +   + S  +   SG S  
Sbjct: 95  SSEDSEEEELRILSSKKSGSYYSYGTKKSGSYSGYSTKKSASRRILSSKKSGSYSGYST- 153

Query: 346 HNEFSGKNVLIERKPGSLMASK-------YGKSVDEYYGILGECRQKLFDVRS 483
             +   + +L  +K GS   SK         K    Y G  G  R+ L   +S
Sbjct: 154 -KKSGSRRILSSKKSGSYSGSKGSKRRILSSKKSGSYSGSKGSKRRNLSSKKS 205

>RIR1_CAEEL (Q03604) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleotide reductase large chain)
          Length = 788

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 229 YVWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSGMSDPHNEFSGKNV 372
           Y +TS E  D    N  +F+  YY     +C+L+ ++ P++ + G  V
Sbjct: 523 YPFTSAEARDL---NKRIFETIYYAALEASCELAELNGPYSTYEGSPV 567

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 70   YVITGDEYYSSVARDILDYLRRDMIGE--DGEIFSAEDADSAEYE 198
            Y +  ++ Y+SVAR I +YL+R ++G   DG +  + D    ++E
Sbjct: 925  YPLRANQTYTSVARHIHEYLQRQVLGSSADGALLVSLDGLRGQFE 969

>PFA5_KLULA (Q6CRV3) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 349

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 352 EFSGKNVLIERKPGSLMASK-YGKSVDEYYGILGECRQKLFDVRSKRPRPHLDDKV 516
           EF G N L    P  L   + YGKS   YY ++G+C     +V S++ + ++ DK+
Sbjct: 287 EFLGPNYLSWFIPSILTHKQSYGKSSANYYDLIGDCN----EVMSEKFQKYMIDKI 338

>CCA_SULSH (P77978) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 412

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 70  YVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARK 213
           Y+  G +YYS    D +       +GEDG ++S ++      E  A+K
Sbjct: 330 YLNIGPQYYSETIDDFIQKNDNIWVGEDGRLYSIKERKEYNAEAIAKK 377

>MODE_SHIFL (P0A9H0) Transcriptional regulator modE|
          Length = 262

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
 Frame = +1

Query: 340 DPHNEFS--GKNVLIERKPGS-----LMASKYGKSVDEYYGILGECRQKLFDVRS 483
           D  NE +   +++L+ER  G       + ++YG+ + + Y +L + +QK FDV S
Sbjct: 50  DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLS 104

>MODE_ECOLI (P0A9G8) Transcriptional regulator modE|
          Length = 262

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
 Frame = +1

Query: 340 DPHNEFS--GKNVLIERKPGS-----LMASKYGKSVDEYYGILGECRQKLFDVRS 483
           D  NE +   +++L+ER  G       + ++YG+ + + Y +L + +QK FDV S
Sbjct: 50  DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLS 104

>MODE_ECO57 (P0A9G9) Transcriptional regulator modE|
          Length = 262

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
 Frame = +1

Query: 340 DPHNEFS--GKNVLIERKPGS-----LMASKYGKSVDEYYGILGECRQKLFDVRS 483
           D  NE +   +++L+ER  G       + ++YG+ + + Y +L + +QK FDV S
Sbjct: 50  DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLS 104

>YQ29_SCHPO (Q10427) Hypothetical protein C11E10.09c in chromosome III|
          Length = 478

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 211 KKEGSFY-VWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSG 333
           KKE S+  +W  Q I   L +   L ++++Y K+SGN  L G
Sbjct: 10  KKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGG 51

>ZN133_HUMAN (P52736) Zinc finger protein 133|
          Length = 654

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 161 FSQQKMLTVQNMKVMQEKKRVLSMCGQVKRSKTHLGRTRSCSRTTTMLNRL 313
           F Q+  LT+  M    EK  V   CG+    K+HL R R   +TT++ +RL
Sbjct: 587 FLQKSHLTLHQMTHTGEKPYVCKTCGRGFSLKSHLSRHR---KTTSVHHRL 634

>VPS66_YEAST (Q06508) Vacuolar protein sorting protein 66|
          Length = 300

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +2

Query: 2   GMFPF*EDAVRPGDK*PMHTWIHMLSQETSIILQLHVIYLIT*GET*LEKMVK--FSQQK 175
           G+ PF  + +R   K      + +L  +T I+L L ++YL+T     L  ++K  FS ++
Sbjct: 13  GIAPFLPNTIRKPSKVMTACLLGILGVKTIIMLPLIMLYLLTGQNNLLGLILKFTFSWKE 72

Query: 176 MLTVQNMKVMQEKK 217
            +TVQ +K    +K
Sbjct: 73  EITVQGIKKRDVRK 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,681,119
Number of Sequences: 219361
Number of extensions: 2109322
Number of successful extensions: 5528
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5518
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)