| Clone Name | baal31i06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190058.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2406 Score = 432 bits (218), Expect = e-118 Identities = 425/495 (85%), Gaps = 1/495 (0%) Strand = Plus / Plus Query: 12 cattttgagaagatgctgtacgaccaggggacaaatagccaatgcatacttggatacata 71 ||||||||||||||| |||||||||| || ||| ||||| |||| ||| | ||||||| Sbjct: 1090 cattttgagaagatgttgtacgaccaagg-acagatagctaatgtatatctagatacatt 1148 Query: 72 tgttatcacaggagacgagtattattcttcagttgcacgtgatatacttgattacttgag 131 | | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1149 tctgatcacgggagatgagtattattcttcagttgcacgtgatatacttgattacttgag 1208 Query: 132 gagagacatgattggagaagatggtgaaattttctcagcagaagatgctgacagtgcaga 191 |||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct: 1209 gagagacatgatcggagaagaaggtgaaatttactcagcagaagatgctgatagtgcaga 1268 Query: 192 atatgaaggtgatgcaagnnnnnnngagggttctttctatgtgtggacaagtcaagagat 251 |||||| |||| | |||| ||||| |||||||||||||||| | | | ||||| Sbjct: 1269 atatgatggtgctccaagaaaaagggagggagctttctatgtgtggactaataaggagat 1328 Query: 252 cgaagacacacttggggagaacgcggagctgttcaagaaccactactatgttaaatcgtc 311 |||||||||||||||||||| | ||||| |||||||| || |||||||| ||||| || Sbjct: 1329 tgaagacacacttggggagaattcagagctattcaagaatcattactatgtcaaatcatc 1388 Query: 312 tggcaactgtgacctatcggggatgagtgatcctcacaacgagttcagtggtaaaaatgt 371 |||||| || ||||| ||| ||||||||||||||||| | ||||||| ||||||||||| Sbjct: 1389 tggcaattgcgacctttcgcggatgagtgatcctcacgatgagttcaagggtaaaaatgt 1448 Query: 372 attaatagaaagaaaaccgggttcattgatggcatcgaagtatggcaagtctgttgatga 431 ||||||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| Sbjct: 1449 gctaatagaaagaaaacaagcttctttgatggcatcaaagtgtggcaagtctgttgatga 1508 Query: 432 atattatggaatcctgggggaatgcagacagaagttgtttgatgtccgatcaaaaaggcc 491 |||| | |||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 1509 atatgctcaaatcctgggggattgtcggcataagttgtttgatgtccggtcaaaaaggcc 1568 Query: 492 aagaccacatttgga 506 ||| ||||||||||| Sbjct: 1569 aaggccacatttgga 1583 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 631 gaatatcttcaagtcgcagaaaaggcagcaaactttataaaggaaaaactctatgat 687 ||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||| Sbjct: 1597 gaatatcttggagttgcagaaaaggcagcacgttttataaaggaaaaactatatgat 1653
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 232 bits (117), Expect = 1e-57 Identities = 231/269 (85%) Strand = Plus / Minus Query: 248 agatcgaagacacacttggggagaacgcggagctgttcaagaaccactactatgttaaat 307 |||| |||||||||||||||||||| | ||||| |||||||| || |||||||| |||| Sbjct: 41061963 agattgaagacacacttggggagaattcagagctattcaagaatcattactatgtcaaat 41061904 Query: 308 cgtctggcaactgtgacctatcggggatgagtgatcctcacaacgagttcagtggtaaaa 367 | |||||||| || ||||| ||| ||||||||||||||||| | ||||||| ||||||| Sbjct: 41061903 catctggcaattgcgacctttcgcggatgagtgatcctcacgatgagttcaagggtaaaa 41061844 Query: 368 atgtattaatagaaagaaaaccgggttcattgatggcatcgaagtatggcaagtctgttg 427 |||| ||||||||||||||| | ||| ||||||||||| |||| |||||||||||||| Sbjct: 41061843 atgtgctaatagaaagaaaacaagcttctttgatggcatcaaagtgtggcaagtctgttg 41061784 Query: 428 atgaatattatggaatcctgggggaatgcagacagaagttgtttgatgtccgatcaaaaa 487 |||||||| | |||||||||||| || | || ||||||||||||||||| ||||||| Sbjct: 41061783 atgaatatgctcaaatcctgggggattgtcggcataagttgtttgatgtccggtcaaaaa 41061724 Query: 488 ggccaagaccacatttggacgacaaggtt 516 ||||||| ||||||||||| || |||||| Sbjct: 41061723 ggccaaggccacatttggatgataaggtt 41061695 Score = 220 bits (111), Expect = 5e-54 Identities = 172/191 (90%), Gaps = 1/191 (0%) Strand = Plus / Minus Query: 12 cattttgagaagatgctgtacgaccaggggacaaatagccaatgcatacttggatacata 71 ||||||||||||||| |||||||||| || ||| ||||| |||| ||| | ||||||| Sbjct: 41062649 cattttgagaagatgttgtacgaccaagg-acagatagctaatgtatatctagatacatt 41062591 Query: 72 tgttatcacaggagacgagtattattcttcagttgcacgtgatatacttgattacttgag 131 | | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41062590 tctgatcacgggagatgagtattattcttcagttgcacgtgatatacttgattacttgag 41062531 Query: 132 gagagacatgattggagaagatggtgaaattttctcagcagaagatgctgacagtgcaga 191 |||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct: 41062530 gagagacatgatcggagaagaaggtgaaatttactcagcagaagatgctgatagtgcaga 41062471 Query: 192 atatgaaggtg 202 |||||| |||| Sbjct: 41062470 atatgatggtg 41062460 Score = 105 bits (53), Expect = 2e-19 Identities = 86/97 (88%) Strand = Plus / Minus Query: 512 aggttattgtttcatggaatggattagcaatatctgcctttgcaagagcttcacaaattt 571 |||||||||| |||||||||||| |||| |||||||| |||||||||||||| |||||| Sbjct: 41061628 aggttattgtctcatggaatggactagctatatctgcttttgcaagagcttcccaaattc 41061569 Query: 572 tgaagtcaggaccacctggaaccaaattttatttccc 608 |||| |||| |||| ||||||||| ||||| |||||| Sbjct: 41061568 tgaaatcagaaccaactggaaccagattttgtttccc 41061532 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 631 gaatatcttcaagtcgcagaaaaggcagcaaactttataaaggaaaaactctatgat 687 ||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||| Sbjct: 41061083 gaatatcttggagttgcagaaaaggcagcacgttttataaaggaaaaactatatgat 41061027
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 232 bits (117), Expect = 1e-57 Identities = 231/269 (85%) Strand = Plus / Minus Query: 248 agatcgaagacacacttggggagaacgcggagctgttcaagaaccactactatgttaaat 307 |||| |||||||||||||||||||| | ||||| |||||||| || |||||||| |||| Sbjct: 98893 agattgaagacacacttggggagaattcagagctattcaagaatcattactatgtcaaat 98834 Query: 308 cgtctggcaactgtgacctatcggggatgagtgatcctcacaacgagttcagtggtaaaa 367 | |||||||| || ||||| ||| ||||||||||||||||| | ||||||| ||||||| Sbjct: 98833 catctggcaattgcgacctttcgcggatgagtgatcctcacgatgagttcaagggtaaaa 98774 Query: 368 atgtattaatagaaagaaaaccgggttcattgatggcatcgaagtatggcaagtctgttg 427 |||| ||||||||||||||| | ||| ||||||||||| |||| |||||||||||||| Sbjct: 98773 atgtgctaatagaaagaaaacaagcttctttgatggcatcaaagtgtggcaagtctgttg 98714 Query: 428 atgaatattatggaatcctgggggaatgcagacagaagttgtttgatgtccgatcaaaaa 487 |||||||| | |||||||||||| || | || ||||||||||||||||| ||||||| Sbjct: 98713 atgaatatgctcaaatcctgggggattgtcggcataagttgtttgatgtccggtcaaaaa 98654 Query: 488 ggccaagaccacatttggacgacaaggtt 516 ||||||| ||||||||||| || |||||| Sbjct: 98653 ggccaaggccacatttggatgataaggtt 98625 Score = 220 bits (111), Expect = 5e-54 Identities = 172/191 (90%), Gaps = 1/191 (0%) Strand = Plus / Minus Query: 12 cattttgagaagatgctgtacgaccaggggacaaatagccaatgcatacttggatacata 71 ||||||||||||||| |||||||||| || ||| ||||| |||| ||| | ||||||| Sbjct: 99579 cattttgagaagatgttgtacgaccaagg-acagatagctaatgtatatctagatacatt 99521 Query: 72 tgttatcacaggagacgagtattattcttcagttgcacgtgatatacttgattacttgag 131 | | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99520 tctgatcacgggagatgagtattattcttcagttgcacgtgatatacttgattacttgag 99461 Query: 132 gagagacatgattggagaagatggtgaaattttctcagcagaagatgctgacagtgcaga 191 |||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct: 99460 gagagacatgatcggagaagaaggtgaaatttactcagcagaagatgctgatagtgcaga 99401 Query: 192 atatgaaggtg 202 |||||| |||| Sbjct: 99400 atatgatggtg 99390 Score = 105 bits (53), Expect = 2e-19 Identities = 86/97 (88%) Strand = Plus / Minus Query: 512 aggttattgtttcatggaatggattagcaatatctgcctttgcaagagcttcacaaattt 571 |||||||||| |||||||||||| |||| |||||||| |||||||||||||| |||||| Sbjct: 98558 aggttattgtctcatggaatggactagctatatctgcttttgcaagagcttcccaaattc 98499 Query: 572 tgaagtcaggaccacctggaaccaaattttatttccc 608 |||| |||| |||| ||||||||| ||||| |||||| Sbjct: 98498 tgaaatcagaaccaactggaaccagattttgtttccc 98462 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 631 gaatatcttcaagtcgcagaaaaggcagcaaactttataaaggaaaaactctatgat 687 ||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||| Sbjct: 98013 gaatatcttggagttgcagaaaaggcagcacgttttataaaggaaaaactatatgat 97957
>dbj|AK061490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B04, full insert sequence Length = 1214 Score = 168 bits (85), Expect = 2e-38 Identities = 175/205 (85%) Strand = Plus / Plus Query: 483 aaaaaggccaagaccacatttggacgacaaggttattgtttcatggaatggattagcaat 542 |||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||| || Sbjct: 1 aaaaaggccaaggccacatttggatgataaggttattgtctcatggaatggactagctat 60 Query: 543 atctgcctttgcaagagcttcacaaattttgaagtcaggaccacctggaaccaaatttta 602 |||||| |||||||||||||| |||||| |||| |||| |||| ||||||||| ||||| Sbjct: 61 atctgcttttgcaagagcttcccaaattctgaaatcagaaccaactggaaccagattttg 120 Query: 603 tttcccggtcacaggatgcgatccagtagaatatcttcaagtcgcagaaaaggcagcaaa 662 |||||| | || || ||| | |||| ||||||||| ||| ||||||||||||||| Sbjct: 121 tttcccaattactgggtgcaacccagaggaatatcttggagttgcagaaaaggcagcacg 180 Query: 663 ctttataaaggaaaaactctatgat 687 ||||||||||||||||| |||||| Sbjct: 181 ttttataaaggaaaaactatatgat 205
>dbj|AK106484.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G12, full insert sequence Length = 1700 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 631 gaatatcttcaagtcgcagaaaaggcagcaaactttataaaggaaaaactctatgat 687 ||||||||| ||| ||||||||||||||| |||||||||||| |||| |||||| Sbjct: 519 gaatatcttggagttgcagaaaaggcagcacgttttataaaggaagaactatatgat 575
>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence Length = 101563 Score = 48.1 bits (24), Expect = 0.039 Identities = 78/96 (81%) Strand = Plus / Plus Query: 262 cttggggagaacgcggagctgttcaagaaccactactatgttaaatcgtctggcaactgt 321 ||||||||||| || || || |||||| | || ||||||||||| ||| || ||||| Sbjct: 75847 cttggggagaatgcagatcttttcaaggagcattactatgttaagaagtcaggtaactgc 75906 Query: 322 gacctatcggggatgagtgatcctcacaacgagttc 357 ||||| || | ||||||||||| |||||||||||| Sbjct: 75907 gacctctcaagcatgagtgatccgcacaacgagttc 75942 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 cttgattacttgaggagagacatgattg 145 |||||||| |||||||||||||||||| Sbjct: 75278 cttgattatctgaggagagacatgattg 75305
>ref|XM_420103.1| PREDICTED: Gallus gallus similar to Transcript increased in spermiogenesis 78 (LOC422100), mRNA Length = 4081 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 15 tttgagaagatgctgtacgaccagggg 41 ||||||||||||||||| ||||||||| Sbjct: 2143 tttgagaagatgctgtatgaccagggg 2169
>emb|CR524263.1| Gallus gallus finished cDNA, clone ChEST1007j1 Length = 1622 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 15 tttgagaagatgctgtacgaccagggg 41 ||||||||||||||||| ||||||||| Sbjct: 138 tttgagaagatgctgtatgaccagggg 164
>ref|XM_588684.2| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 1 (LOC511363), mRNA Length = 2570 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 1012 cccactttgagaagatgctgtatgaccagg 1041
>ref|XM_880928.1| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 7 (LOC511363), mRNA Length = 2450 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 892 cccactttgagaagatgctgtatgaccagg 921
>ref|XM_880908.1| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 6 (LOC511363), mRNA Length = 1995 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 437 cccactttgagaagatgctgtatgaccagg 466
>ref|XM_880891.1| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 5 (LOC511363), mRNA Length = 2633 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 1012 cccactttgagaagatgctgtatgaccagg 1041
>ref|XM_880872.1| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 4 (LOC511363), mRNA Length = 1754 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 1012 cccactttgagaagatgctgtatgaccagg 1041
>ref|XM_880833.1| PREDICTED: Bos taurus similar to sperm protein SSP411, transcript variant 2 (LOC511363), mRNA Length = 2587 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 1029 cccactttgagaagatgctgtatgaccagg 1058
>ref|XM_548202.2| PREDICTED: Canis familiaris similar to sperm protein SSP411 (LOC491082), mRNA Length = 2599 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| ||||||||||||||||| ||||||| Sbjct: 1038 cccactttgagaagatgctgtatgaccagg 1067
>gb|AC012153.10| Homo sapiens 11q BAC RP5-1045O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120628 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 tggagaagatggtgaaattttc 165 |||||||||||||||||||||| Sbjct: 30121 tggagaagatggtgaaattttc 30142
>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2) gene, partial cds; and RST and OAT4 genes, complete cds, complete sequence Length = 170114 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 tggagaagatggtgaaattttc 165 |||||||||||||||||||||| Sbjct: 140835 tggagaagatggtgaaattttc 140856
>gb|AE005053.1| Halobacterium sp. NRC-1 section 84 of 170 of the complete genome Length = 11842 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 gagaagatgctgtacgaccagg 39 |||||||||||||||||||||| Sbjct: 3188 gagaagatgctgtacgaccagg 3167
>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete sequence Length = 160739 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 tggagaagatggtgaaattttc 165 |||||||||||||||||||||| Sbjct: 20093 tggagaagatggtgaaattttc 20072
>dbj|AP006288.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-128H22, complete sequence Length = 169259 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 tggagaagatggtgaaattttc 165 |||||||||||||||||||||| Sbjct: 60071 tggagaagatggtgaaattttc 60050
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 10 cccattttgagaagatgctgtacgaccagg 39 |||| |||||||||||||| |||||||||| Sbjct: 3130368 cccactttgagaagatgctctacgaccagg 3130339
>gb|AE006788.1| Sulfolobus solfataricus P2 section 147 of 272 of the complete genome Length = 10565 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gattggagaagatggtgaaat 161 ||||||||||||||||||||| Sbjct: 6317 gattggagaagatggtgaaat 6337
>gb|AY438568.1| Rattus norvegicus sperm protein SSP411 mRNA, complete cds Length = 2598 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 tttgagaagatgctgtacgaccagg 39 ||||||||||||||||| ||||||| Sbjct: 1062 tttgagaagatgctgtatgaccagg 1086
>gb|AC133191.3| Mus musculus chromosome 18 clone RP23-390K15, complete sequence Length = 212060 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 646 gcagaaaaggcagcaaactttataa 670 |||||||||||| |||||||||||| Sbjct: 187292 gcagaaaaggcatcaaactttataa 187268
>gb|AC115750.9| Mus musculus chromosome 10, clone RP23-16F5, complete sequence Length = 228071 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 agcaaactttataaaggaaaa 677 ||||||||||||||||||||| Sbjct: 91241 agcaaactttataaaggaaaa 91261
>ref|NM_199402.1| Rattus norvegicus spermatogenesis associated 20 (Spata20), mRNA Length = 2598 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 tttgagaagatgctgtacgaccagg 39 ||||||||||||||||| ||||||| Sbjct: 1062 tttgagaagatgctgtatgaccagg 1086
>emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on chromosome 20 Contains the 5' end of the CDH4 gene for retinal cadherin 4 type 1 (R-cadherin), complete sequence Length = 121478 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 aaaggccaagaccacatttggacga 509 |||||||| |||||||||||||||| Sbjct: 119048 aaaggccaggaccacatttggacga 119024
>ref|XM_967756.1| PREDICTED: Tribolium castaneum similar to CG4878-PB, isoform B (LOC661605), mRNA Length = 2106 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 ttacttgaggagagacatgattgga 147 ||||||||||||||||||| ||||| Sbjct: 622 ttacttgaggagagacatgcttgga 646
>gb|AC128795.1| Homo sapiens 12 BAC RP11-181D11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 23870 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 gatggtgaaattttctcagca 171 ||||||||||||||||||||| Sbjct: 3794 gatggtgaaattttctcagca 3814
>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence Length = 186687 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 646 gcagaaaaggcagcaaactttataa 670 |||||||||||| |||||||||||| Sbjct: 2940 gcagaaaaggcatcaaactttataa 2916
>gb|AC005798.10|AC005798 Homo sapiens chromosome 4 clone RP11-442P12, complete sequence Length = 206631 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 ggacaaatagccaatgcatacttgg 64 ||||||||||| ||||||||||||| Sbjct: 117184 ggacaaatagctaatgcatacttgg 117160
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 tttgagaagatgctgtacgaccagg 39 |||||||||||||| |||||||||| Sbjct: 1513386 tttgagaagatgctctacgaccagg 1513410
>emb|AL929291.9| Zebrafish DNA sequence from clone CH211-189P10 in linkage group 20, complete sequence Length = 149681 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 660 aaactttataaaggaaaaactctatgatg 688 |||||||| |||||||||||| ||||||| Sbjct: 63050 aaactttacaaaggaaaaactgtatgatg 63022
>ref|NM_116556.3| Arabidopsis thaliana unknown protein AT4G03200 mRNA, complete cds Length = 2784 Score = 40.1 bits (20), Expect = 9.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 1 tggcatgttcc-cattttgagaagatgctgta 31 ||||||||||| ||||||||||| |||||||| Sbjct: 1179 tggcatgttccacattttgagaaaatgctgta 1210
>gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome 13, complete sequence Length = 224330 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 353 agttcagtggtaaaaatgtattaataga 380 ||||| ||||||||||| |||||||||| Sbjct: 219258 agttctgtggtaaaaatatattaataga 219231
>gb|AC164622.3| Mus musculus BAC clone CH36-287E13 from chromosome 13, complete sequence Length = 174691 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 agttcagtggtaaaaatgtattaataga 380 ||||| ||||||||||| |||||||||| Sbjct: 44017 agttctgtggtaaaaatatattaataga 44044
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 cattttgagaagatgctgtacgac 35 ||||| |||||||||||||||||| Sbjct: 1208663 catttcgagaagatgctgtacgac 1208686
>ref|XM_424262.1| PREDICTED: Gallus gallus similar to spectrin, beta, erythrocytic (includes spherocytosis, clinical type I); Spectrin, beta, erythrocytic; spectrin, beta, erythrocytic (includes sperocytosis, clinical type I) (LOC426633), partial mRNA Length = 3632 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 agaagatgctgacagtgcag 190 |||||||||||||||||||| Sbjct: 1733 agaagatgctgacagtgcag 1752
>gb|AC116856.8| Mus musculus chromosome 14, clone RP24-403P16, complete sequence Length = 196560 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 aaatgtattaatagaaagaa 385 |||||||||||||||||||| Sbjct: 119319 aaatgtattaatagaaagaa 119338
>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete sequence Length = 204727 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 taaaaatgtattaatagaaa 382 |||||||||||||||||||| Sbjct: 69120 taaaaatgtattaatagaaa 69101
>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence Length = 166883 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 545 ctgcctttgcaagagcttcacaaa 568 |||||||||||| ||||||||||| Sbjct: 9332 ctgcctttgcaacagcttcacaaa 9309
>gb|AC133937.3| Mus musculus BAC clone RP24-486L5 from chromosome 5, complete sequence Length = 209392 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 545 ctgcctttgcaagagcttcacaaa 568 |||||||||||| ||||||||||| Sbjct: 12476 ctgcctttgcaacagcttcacaaa 12499
>gb|AC115743.10| Mus musculus chromosome 5, clone RP23-477P24, complete sequence Length = 189890 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 545 ctgcctttgcaagagcttcacaaa 568 |||||||||||| ||||||||||| Sbjct: 149614 ctgcctttgcaacagcttcacaaa 149591
>gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosome 6, complete sequence Length = 138242 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgtgacctatcggggatgag 338 |||||||||||||||||||| Sbjct: 18563 tgtgacctatcggggatgag 18582
>gb|BT010343.1| Arabidopsis thaliana At4g03200 mRNA, complete cds Length = 2271 Score = 40.1 bits (20), Expect = 9.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 1 tggcatgttcc-cattttgagaagatgctgta 31 ||||||||||| ||||||||||| |||||||| Sbjct: 856 tggcatgttccacattttgagaaaatgctgta 887
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 cattttgagaagatgctgtacgaccagg 39 ||||| |||||||||||||| ||||||| Sbjct: 546518 catttcgagaagatgctgtatgaccagg 546491
>emb|AL162497.20| Human DNA sequence from clone RP11-313L9 on chromosome 13 Contains a novel gene, the IRS2 gene for insulin receptor substrate 2 and two CpG islands, complete sequence Length = 143409 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 agaagatgctgacagtgcagaatatgaa 198 |||| |||||| |||||||||||||||| Sbjct: 61296 agaatatgctgccagtgcagaatatgaa 61269
>emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on chromosome 9 Contains the 5' end of a novel gene (MGC20553), complete sequence Length = 145676 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 agcagaagatgctgacagtgcaga 191 ||||||||| |||||||||||||| Sbjct: 23628 agcagaagaggctgacagtgcaga 23605
>emb|AL109615.42|HS1120P11 Human DNA sequence from clone RP5-1120P11 on chromosome 6p12.3-21.2, complete sequence Length = 146655 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 tttgaagtcaggaccacctg 589 |||||||||||||||||||| Sbjct: 129977 tttgaagtcaggaccacctg 129958
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 aaactttataaaggaaaaac 679 |||||||||||||||||||| Sbjct: 939559 aaactttataaaggaaaaac 939540
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 cattttgagaagatgctgtacgac 35 ||||| |||||||||||||||||| Sbjct: 174641 catttcgagaagatgctgtacgac 174664
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 cattttgagaagatgctgtacgac 35 ||||| |||||||||||||||||| Sbjct: 222788 catttcgagaagatgctgtacgac 222811
>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence Length = 127223 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 atttcccggtcacaggatgc 621 |||||||||||||||||||| Sbjct: 32693 atttcccggtcacaggatgc 32712
>gb|AY062530.1| Arabidopsis thaliana predicted protein of unknown function (At4g03200; F4C21.12) mRNA, complete cds Length = 2560 Score = 40.1 bits (20), Expect = 9.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 1 tggcatgttcc-cattttgagaagatgctgta 31 ||||||||||| ||||||||||| |||||||| Sbjct: 1034 tggcatgttccacattttgagaaaatgctgta 1065
>gb|AC157352.2| Mus musculus BAC clone RP24-483A21 from chromosome 12, complete sequence Length = 131417 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 650 aaaaggcagcaaactttataaagg 673 ||||| |||||||||||||||||| Sbjct: 52594 aaaagtcagcaaactttataaagg 52617
>gb|AC073479.7| Homo sapiens BAC clone RP11-749J12 from 2, complete sequence Length = 196671 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 667 ataaaggaaaaactctatga 686 |||||||||||||||||||| Sbjct: 82491 ataaaggaaaaactctatga 82472
>gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, complete sequence Length = 169483 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tggagaagatggtgaaattt 163 |||||||||||||||||||| Sbjct: 128380 tggagaagatggtgaaattt 128399
>gb|AC021867.19| Homo sapiens 3 BAC RP11-220G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146809 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gagacatgattggagaagat 153 |||||||||||||||||||| Sbjct: 72368 gagacatgattggagaagat 72349
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 cattttgagaagatgctgtacgac 35 ||||| |||||||||||||||||| Sbjct: 3043312 catttcgagaagatgctgtacgac 3043289
>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence Length = 181220 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgtgacctatcggggatgag 338 |||||||||||||||||||| Sbjct: 162407 tgtgacctatcggggatgag 162426
>gb|AC154029.4| Mus musculus 6 BAC RP23-26J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188537 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 ctggaaccaaattttatttc 606 |||||||||||||||||||| Sbjct: 90241 ctggaaccaaattttatttc 90222
>emb|AL845519.6| Mouse DNA sequence from clone RP23-295F2 on chromosome 2, complete sequence Length = 164578 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 662 actttataaaggaaaaactc 681 |||||||||||||||||||| Sbjct: 110225 actttataaaggaaaaactc 110206
>emb|AL589902.18| Mouse DNA sequence from clone RP23-108D12 on chromosome 2, complete sequence Length = 200325 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 652 aaggcagcaaactttataaa 671 |||||||||||||||||||| Sbjct: 194608 aaggcagcaaactttataaa 194589 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,317,755 Number of Sequences: 3902068 Number of extensions: 7317755 Number of successful extensions: 144351 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 144093 Number of HSP's gapped (non-prelim): 256 length of query: 690 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 667 effective length of database: 17,143,297,704 effective search space: 11434579568568 effective search space used: 11434579568568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)