ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal31h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
2ref|XM_470256.1| Oryza sativa (japonica cultivar-group), predic... 375 e-101
3gb|AY112221.1| Zea mays CL58622_1 mRNA sequence 244 2e-61
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 212 7e-52
5gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
7gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
8gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds 42 1.4
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.4
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
12ref|XM_468503.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
13ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
14ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
15gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.6
16ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-1... 40 5.6
17emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA 40 5.6
18gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting... 40 5.6
19emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on ch... 40 5.6
20emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.6
21emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.6
22dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
23gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.6
24gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, compl... 40 5.6
25gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, compl... 40 5.6
26gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-13... 40 5.6
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
32dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
33dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
35gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 40 5.6
36dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
37gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the ... 40 5.6
38ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558 ... 40 5.6
39dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
40dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
41dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
42dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
43dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
44dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
45gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymer... 40 5.6
46gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.6
47gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
48emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.6
49emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
50gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from c... 40 5.6 
>dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D03, full
            insert sequence
          Length = 1341

 Score =  379 bits (191), Expect = e-102
 Identities = 281/311 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggcgccgccggaggag 64
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 817  aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggccccgccggaggag 876

                                                                        
Query: 65   aggaagaagcgcatctacaacaccgcgccctccaagttcaccaccatcgaccagtctagc 124
            ||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||  ||||
Sbjct: 877  aggaagaagcgcatctacagcacggcgccctccaaattcaccaccattgatcagaatagc 936

                                                                        
Query: 125  gggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagcccagga 184
            ||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||| || 
Sbjct: 937  gggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagcccgggg 996

                                                                        
Query: 185  ggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccatcctc 244
            |  ||||||   ||||||||||| ||||||||||| ||||||||| |||||||||| || 
Sbjct: 997  gagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccatgctg 1056

                                                                        
Query: 245  gtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagcacgac 304
            ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1057 gtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagcacgac 1116

                       
Query: 305  aacttgtaact 315
            ||| |||||||
Sbjct: 1117 aacctgtaact 1127
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>ref|XM_470256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  375 bits (189), Expect = e-101
 Identities = 279/309 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggcgccgccggaggag 64
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 892  aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggccccgccggaggag 951

                                                                        
Query: 65   aggaagaagcgcatctacaacaccgcgccctccaagttcaccaccatcgaccagtctagc 124
            ||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||  ||||
Sbjct: 952  aggaagaagcgcatctacagcacggcgccctccaaattcaccaccattgatcagaatagc 1011

                                                                        
Query: 125  gggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagcccagga 184
            ||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||| || 
Sbjct: 1012 gggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagcccgggg 1071

                                                                        
Query: 185  ggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccatcctc 244
            |  ||||||   ||||||||||| ||||||||||| ||||||||| |||||||||| || 
Sbjct: 1072 gagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccatgctg 1131

                                                                        
Query: 245  gtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagcacgac 304
            ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1132 gtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagcacgac 1191

                     
Query: 305  aacttgtaa 313
            ||| |||||
Sbjct: 1192 aacctgtaa 1200
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>gb|AY112221.1| Zea mays CL58622_1 mRNA sequence
          Length = 883

 Score =  244 bits (123), Expect = 2e-61
 Identities = 225/262 (85%)
 Strand = Plus / Minus

                                                                       
Query: 50  gcgccgccggaggagaggaagaagcgcatctacaacaccgcgccctccaagttcaccacc 109
           ||||||  ||||||||||||||||||| |||||| ||||||||| ||||||||       
Sbjct: 398 gcgccgnnggaggagaggaagaagcgcgtctacagcaccgcgccgtccaagttnnnnnnn 339

                                                                       
Query: 110 atcgaccagtctagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtac 169
           ||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 338 atcgatcagtatagcgggctcgggttcaggctggtgaggatggggttcgaggacatgtac 279

                                                                       
Query: 170 ctgggcagcccaggaggaatgtacgacaagttcggcaacgactacttcctctgcaccggg 229
           ||  ||||||| ||||| ||||||| |||||||||||| |||||||| || ||||| |||
Sbjct: 278 ctctgcagcccgggaggcatgtacgccaagttcggcaaggactactttctgtgcacgggg 219

                                                                       
Query: 230 ccggcgtccatcctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcag 289
             |||||||||  | |||||||| ||||||  ||||||||||||||||| || |||||||
Sbjct: 218 atggcgtccatgttggtgcccgttgtcgtcaaccccggcgaggagtggaaggcggcgcag 159

                                 
Query: 290 gtcatcgagcacgacaacttgt 311
           ||||| ||||| ||||||||||
Sbjct: 158 gtcatagagcatgacaacttgt 137
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                           
Query: 121     tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 180
               ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 3102406 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 3102347

                                                                           
Query: 181     aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 240
                || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 3102346 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 3102287

                                                                           
Query: 241     cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 300
                || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 3102286 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 3102227

                              
Query: 301     cgacaacttgtaact 315
               ||||||| |||||||
Sbjct: 3102226 cgacaacctgtaact 3102212



 Score =  180 bits (91), Expect = 2e-42
 Identities = 103/107 (96%)
 Strand = Plus / Minus

                                                                           
Query: 5       aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggcgccgccggaggag 64
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3103011 aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggccccgccggaggag 3102952

                                                              
Query: 65      aggaagaagcgcatctacaacaccgcgccctccaagttcaccaccat 111
               ||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 3102951 aggaagaagcgcatctacagcacggcgccctccaaattcaccaccat 3102905



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       ggaggagaggaagaagcgca 77
                ||||||||||||||||||||
Sbjct: 13764925 ggaggagaggaagaagcgca 13764944
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                         
Query: 121   tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 180
             ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 25419 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 25360

                                                                         
Query: 181   aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 240
              || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 25359 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 25300

                                                                         
Query: 241   cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 300
              || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 25299 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 25240

                            
Query: 301   cgacaacttgtaact 315
             ||||||| |||||||
Sbjct: 25239 cgacaacctgtaact 25225



 Score =  180 bits (91), Expect = 2e-42
 Identities = 103/107 (96%)
 Strand = Plus / Minus

                                                                         
Query: 5     aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggcgccgccggaggag 64
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 26024 aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggccccgccggaggag 25965

                                                            
Query: 65    aggaagaagcgcatctacaacaccgcgccctccaagttcaccaccat 111
             ||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 25964 aggaagaagcgcatctacagcacggcgccctccaaattcaccaccat 25918
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                           
Query: 121     tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 180
               ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 3102517 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 3102458

                                                                           
Query: 181     aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 240
                || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 3102457 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 3102398

                                                                           
Query: 241     cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 300
                || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 3102397 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 3102338

                              
Query: 301     cgacaacttgtaact 315
               ||||||| |||||||
Sbjct: 3102337 cgacaacctgtaact 3102323



 Score =  180 bits (91), Expect = 2e-42
 Identities = 103/107 (96%)
 Strand = Plus / Minus

                                                                           
Query: 5       aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggcgccgccggaggag 64
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3103122 aacctctacaccatcctcaagaagaaggtgagcagggtgtacgcggccccgccggaggag 3103063

                                                              
Query: 65      aggaagaagcgcatctacaacaccgcgccctccaagttcaccaccat 111
               ||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 3103062 aggaagaagcgcatctacagcacggcgccctccaaattcaccaccat 3103016



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       ggaggagaggaagaagcgca 77
                ||||||||||||||||||||
Sbjct: 13759900 ggaggagaggaagaagcgca 13759919
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 377  atgaatcttgtaaccacccat 397
            |||||||||||||||||||||
Sbjct: 6602 atgaatcttgtaaccacccat 6582
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>gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds
          Length = 463

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 2   gagaacctctacaccatcctc 22
           |||||||||||||||||||||
Sbjct: 152 gagaacctctacaccatcctc 172
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 377      atgaatcttgtaaccacccat 397
                |||||||||||||||||||||
Sbjct: 21654549 atgaatcttgtaaccacccat 21654529
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 250     cgtcgtcgtcggccccggcga 270
               |||||||||||||||||||||
Sbjct: 1435696 cgtcgtcgtcggccccggcga 1435716
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 377      atgaatcttgtaaccacccat 397
                |||||||||||||||||||||
Sbjct: 21964748 atgaatcttgtaaccacccat 21964728
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>ref|XM_468503.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2037

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgtcgtcgtcggccccggcg 269
           ||||||||||||||||||||
Sbjct: 232 cgtcgtcgtcggccccggcg 213
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>ref|XM_463635.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cgccggaggagaggaagaag 73
            ||||||||||||||||||||
Sbjct: 1028 cgccggaggagaggaagaag 1047
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>ref|XM_463632.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 50   gcgccgccggaggagaggaagaag 73
            ||||||||||||| ||||||||||
Sbjct: 1006 gcgccgccggaggggaggaagaag 1029
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 244     cgtgcccgtcgtcgtcggcc 263
               ||||||||||||||||||||
Sbjct: 4220951 cgtgcccgtcgtcgtcggcc 4220932
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>ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-15 interacting
           protein 3) (LOC538660), mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ggagaacctctacaccatcc 20
           ||||||||||||||||||||
Sbjct: 291 ggagaacctctacaccatcc 310
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>emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcgcaggtcatcgagcacg 302
           ||||||||||||||||||||
Sbjct: 272 ggcgcaggtcatcgagcacg 291
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>gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting protein 3), mRNA
           (cDNA clone MGC:137304 IMAGE:8179488), complete cds
          Length = 2598

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ggagaacctctacaccatcc 20
           ||||||||||||||||||||
Sbjct: 671 ggagaacctctacaccatcc 690
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>emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on chromosome 11 Contains the
             5' end of the Ddc gene for dopa decarboxylase, a novel
             gene and the 3' end of the Grb10 gene for growth factor
             receptor bound protein 10, complete sequence
          Length = 128744

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   aaatcatgtacattctcaaa 368
             ||||||||||||||||||||
Sbjct: 30971 aaatcatgtacattctcaaa 30952
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   cgtgcccgtcgtcgtcggcc 263
             ||||||||||||||||||||
Sbjct: 61906 cgtgcccgtcgtcgtcggcc 61887
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             14/14
          Length = 278492

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   cgtgcccgtcgtcgtcggcc 263
             ||||||||||||||||||||
Sbjct: 97933 cgtgcccgtcgtcgtcggcc 97914
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cgccggaggagaggaagaag 73
            ||||||||||||||||||||
Sbjct: 5414 cgccggaggagaggaagaag 5433
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    ggaggagaggaagaagcgca 77
             ||||||||||||||||||||
Sbjct: 41453 ggaggagaggaagaagcgca 41472
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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 11    tacaccatcctcaagaagaaggtgagca 38
             ||||||||||||||||| ||| ||||||
Sbjct: 77873 tacaccatcctcaagaaaaagttgagca 77846
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>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   tgtgaggatggggttcgagg 161
             ||||||||||||||||||||
Sbjct: 40370 tgtgaggatggggttcgagg 40351
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>gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-131K21, complete sequence
          Length = 181602

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   gcgggctggggttcaggctt 142
             ||||||||||||||||||||
Sbjct: 89185 gcgggctggggttcaggctt 89204
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     cgactacttcctctgcaccg 227
               ||||||||||||||||||||
Sbjct: 4200807 cgactacttcctctgcaccg 4200788
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       cgccggaggagaggaagaag 73
                ||||||||||||||||||||
Sbjct: 22977237 cgccggaggagaggaagaag 22977256
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 49       ggcgccgccggaggagagga 68
                ||||||||||||||||||||
Sbjct: 26217579 ggcgccgccggaggagagga 26217560
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      cgtcgtcgtcggccccggcg 269
                ||||||||||||||||||||
Sbjct: 35572592 cgtcgtcgtcggccccggcg 35572573
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       cgccggaggagaggaagaag 73
                ||||||||||||||||||||
Sbjct: 40206462 cgccggaggagaggaagaag 40206481



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 50       gcgccgccggaggagaggaagaag 73
                ||||||||||||| ||||||||||
Sbjct: 40196846 gcgccgccggaggggaggaagaag 40196869
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     cgccggaggagaggaagaag 73
              ||||||||||||||||||||
Sbjct: 149546 cgccggaggagaggaagaag 149565



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     gcgccgccggaggagaggaagaag 73
              ||||||||||||| ||||||||||
Sbjct: 139930 gcgccgccggaggggaggaagaag 139953
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cgccggaggagaggaagaag 73
             ||||||||||||||||||||
Sbjct: 72240 cgccggaggagaggaagaag 72259



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    gcgccgccggaggagaggaagaag 73
             ||||||||||||| ||||||||||
Sbjct: 62624 gcgccgccggaggggaggaagaag 62647
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ggtgtacgcggcgccgccgg 59
              ||||||||||||||||||||
Sbjct: 316870 ggtgtacgcggcgccgccgg 316851
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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 11     tacaccatcctcaagaagaaggtgagca 38
              ||||||||||||||||| ||| ||||||
Sbjct: 112749 tacaccatcctcaagaaaaagttgagca 112776
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>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   cgtcgtcgtcggccccggcg 269
             ||||||||||||||||||||
Sbjct: 88984 cgtcgtcgtcggccccggcg 88965
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>gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the complete genome
          Length = 15274

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  tcgtcggccccggcgaggag 274
            ||||||||||||||||||||
Sbjct: 7341 tcgtcggccccggcgaggag 7360
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>ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558
           (ENSANGG00000023121), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 ggtcatcgagcacgacaact 308
           ||||||||||||||||||||
Sbjct: 642 ggtcatcgagcacgacaact 661
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>dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C05,
          full insert sequence
          Length = 934

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 54 cgccggaggagaggaagaag 73
          ||||||||||||||||||||
Sbjct: 95 cgccggaggagaggaagaag 76
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>dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044P12,
          full insert sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 54 cgccggaggagaggaagaag 73
          ||||||||||||||||||||
Sbjct: 92 cgccggaggagaggaagaag 73
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>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full
            insert sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cgccggaggagaggaagaag 73
            ||||||||||||||||||||
Sbjct: 1056 cgccggaggagaggaagaag 1075
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>dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007N07, full
           insert sequence
          Length = 2037

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgtcgtcgtcggccccggcg 269
           ||||||||||||||||||||
Sbjct: 232 cgtcgtcgtcggccccggcg 213
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>dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B07,
          full insert sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 54 cgccggaggagaggaagaag 73
          ||||||||||||||||||||
Sbjct: 95 cgccggaggagaggaagaag 76
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E12
          Length = 152448

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ggcgccgccggaggagagga 68
              ||||||||||||||||||||
Sbjct: 109437 ggcgccgccggaggagagga 109418
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>gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymerase subunit B (rpoB)
            gene, complete cds
          Length = 3934

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gcagggtgtacgcggcgccg 55
            ||||||||||||||||||||
Sbjct: 3444 gcagggtgtacgcggcgccg 3425
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 54      cgccggaggagaggaagaagcgca 77
               |||||||||| |||||||||||||
Sbjct: 1483534 cgccggaggacaggaagaagcgca 1483557
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       cgccggaggagaggaagaag 73
                ||||||||||||||||||||
Sbjct: 22905428 cgccggaggagaggaagaag 22905447
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cgccggaggagaggaagaag 73
             ||||||||||||||||||||
Sbjct: 86514 cgccggaggagaggaagaag 86533
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>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
             complete sequence
          Length = 132854

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   cgactacttcctctgcaccg 227
             ||||||||||||||||||||
Sbjct: 43871 cgactacttcctctgcaccg 43852
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>gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from clone y126
          Length = 37164

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   cgtgcccgtcgtcgtcggcc 263
             ||||||||||||||||||||
Sbjct: 15287 cgtgcccgtcgtcgtcggcc 15268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,449,596
Number of Sequences: 3902068
Number of extensions: 3449596
Number of successful extensions: 84872
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83930
Number of HSP's gapped (non-prelim): 937
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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