>YRBE_BACSU (O05389) Hypothetical oxidoreductase yrbE (EC 1.-.-.-)|
          Length = 341

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
 Frame = +1

Query: 289 AAKQRPDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAI--REHRFPFLVKVNNWNR 462
           AA ++  + +QVG   R+ P   K+   V++G +G   ++ I  R+   P +  V     
Sbjct: 111 AAVRKHGVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPNIDYVRT--- 167

Query: 463 FNCNSGGTLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVI 642
               SGG  ++   H FD+ R    +    V A GA  VN        ++ D ID A + 
Sbjct: 168 ----SGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPS----FAELGD-IDTAVIT 218

Query: 643 IEFDNGCRGMLD 678
           + F+NG   ++D
Sbjct: 219 LTFENGAMAVID 230

>CBAC_COMTE (Q44258) 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene|
           dehydrogenase (EC 1.-.-.-)
          Length = 397

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 3/146 (2%)
 Frame = +1

Query: 283 IEAAKQRPDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLVKVNNWNR 462
           + A  QR    + VG  + +  P+++  + + SG  G+VR +    +   FL +      
Sbjct: 105 MNACAQRAGKYLIVGHSHSFDHPISRAKELIDSGRYGRVRFIHSMNYT-DFLYRPRRAEE 163

Query: 463 FNCNSGGTLV-EKCCHFFDLIRLFADANPVRVMA-SGAIDVNHKDEVYHGKVPDIIDNAY 636
            N + GG +V  +  H  D+IRL A    V V +  G  D   + E            AY
Sbjct: 164 LNTDLGGGVVFNQASHQLDVIRLLAQGRVVDVSSYLGRWDAARRTE-----------GAY 212

Query: 637 -VIIEFDNGCRGMLDLCMFAEGSRNE 711
             +I+FDNG    +    +A  + +E
Sbjct: 213 SALIKFDNGVAANVTYSGYAHYNSDE 238

>MI2D_RHIME (O68965) Inositol 2-dehydrogenase (EC 1.1.1.18)|
          Length = 330

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +1

Query: 316 VQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLVKVNNWNRFNCNSGGTLVE 495
           + VG   R+ P    +   +  G +G+V MV I   R P    V+   R    SGG   +
Sbjct: 116 LMVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITS-RDPSAPPVDYIKR----SGGIFRD 170

Query: 496 KCCHFFDLIRLFADANPVRVMASGAI 573
              H FD+ R      PV V A+ A+
Sbjct: 171 MTIHDFDMARFLLGEEPVSVTATAAV 196

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 693  SKHAEIKHATTAIIKFYDHICIINYIWYLSMINLILVVNINSSRGHYTNRVR 538
            S + +++  TT ++ F DH C   Y     + +L  V + N S GHY   VR
Sbjct: 1109 SSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVR 1160

>ALG1_KLULA (Q6CVU2) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC|
           2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose
           mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol
           mannosyltransferase) (Beta-1,4-mannosyltransferase)
           (Asparagine-linked gl
          Length = 447

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 543 VRICKQSYQIKKVAALLNQSPPTVAIKPIPVVHLNKERKPVFTDSHH 403
           +++C   ++++ V  +L Q+PPT+ I PI VV     R  +  D H+
Sbjct: 116 LQLCSMFWKLRAVDYILLQNPPTIPILPIAVVVKTFSRAKLIIDWHN 162

>YISS_BACSU (P40332) Hypothetical oxidoreductase yisS (EC 1.-.-.-)|
          Length = 342

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
 Frame = +1

Query: 310 ILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVA--IREHRFPFLVKVNNWNRFNCNSGG 483
           ++ QVG   R+ P  A     + +G +G+        R+   P          F  +SGG
Sbjct: 119 VICQVGFMRRFDPAYADAKRRIDAGEIGKPIYYKGFTRDQGAPPA-------EFIKHSGG 171

Query: 484 TLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVIIEFDNGC 663
             ++   H +D+ R    A    V   G I  N   E Y       +D A   IEFD+G 
Sbjct: 172 IFIDCSIHDYDIARYLLGAEITSVSGHGRILNNPFMEQYGD-----VDQALTYIEFDSGA 226

Query: 664 RG 669
            G
Sbjct: 227 AG 228

>YEAH_SCHPO (O14082) Hypothetical protein UNK4.17 in chromosome I|
          Length = 405

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 24/73 (32%), Positives = 32/73 (43%)
 Frame = +1

Query: 313 LVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLVKVNNWNRFNCNSGGTLV 492
           ++ VG   RY+  V K  + +K   L  V  VA     +    K   W      SGG +V
Sbjct: 181 VISVGYMLRYLKTVQKAKEIIKEKNLKVVSTVAKYNSAYIHNSKKFWW--IMSESGGPVV 238

Query: 493 EKCCHFFDLIRLF 531
           E+  HF DL R F
Sbjct: 239 EQGTHFCDLSRYF 251

>Y816_SYNY3 (P74041) Hypothetical oxidoreductase sll0816 (EC 1.-.-.-)|
          Length = 371

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
 Frame = +1

Query: 277 QVIEAAKQRPDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLV----- 441
           ++   A+QR ++ V    E+R++P    + + +  G LGQ++++ +      +LV     
Sbjct: 110 ELYHLARQR-EVQVIPDFEFRFVPAWQYVAELLGQGILGQLKLIKV-----DWLVGSRAN 163

Query: 442 --KVNNWNRFNCNSGGTLVEKCCHFFDLIR-LFADANPVRVMASGAIDVNHKDEVYHGKV 612
             +  NW       GG L     H FD +  LF  A  +    S AI     D + + ++
Sbjct: 164 PNRAWNWYAQREKGGGALGALASHTFDYLHWLFGPAQSLAANLSVAI-AERPDPLDNNRL 222

Query: 613 PDII--DNAYVIIEFDNGCRGMLDLCMFAEGSR 705
             +   D A + +   N     +++   A G R
Sbjct: 223 KPVTAEDTALISLTLANDVPCQINITSVAHGGR 255

>HB2C_PIG (P15982) SLA class II histocompatibility antigen, DQ haplotype C|
           beta chain precursor
          Length = 261

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 540 RICKQSYQIKKVAALLNQSPPTVAIKPIPVVHLN 439
           R+CK +YQI++   L  +  PTV I P     LN
Sbjct: 109 RVCKHNYQIEEGTTLQRRVQPTVTISPSKAEALN 142

>SYV_PORGI (Q7MVD7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
 Frame = +1

Query: 526 LFADANPVRVMASGAIDVNHKDEVYH------------GKVPDIIDNAYVIIEFDNGC 663
           + A   P  +M   A+ VN  DE Y             G+   II++ YV +EF  GC
Sbjct: 213 IVATTRPETIMGDTAVCVNPNDERYRWLRGKRVIVPTVGRAVPIIEDEYVDMEFGTGC 270

>ZGPAT_HUMAN (Q8N5A5) Zinc finger CCCH-type with G patch domain protein (Zinc|
           finger CCCH-type domain-containing protein 9)
          Length = 531

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 430 PFLVKVNNWNRFNCN-SGGTLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHG 606
           PF ++     + NC  S G +V       D +R F D +   + A  A    H+D ++H 
Sbjct: 181 PFFLEGKCRFKENCRFSHGQVVS-----LDELRPFQDPDLSSLQAGSACLAKHQDGLWHA 235

Query: 607 KVPDIIDNAYVIIEFDN 657
                +DN Y  ++FD+
Sbjct: 236 ARITDVDNGYYTVKFDS 252

>IF2_PROMA (Q7VA20) Translation initiation factor IF-2|
          Length = 1134

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 528 QSYQIKKVAALLNQSPPTVAIKPIPVVHLNKERKP 424
           Q+ QIK+ + L+N+SP T   +PI  +  NK + P
Sbjct: 205 QARQIKQSSDLINRSPKTSPKQPIQEIQTNKPKAP 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,900,574
Number of Sequences: 219361
Number of extensions: 1817063
Number of successful extensions: 5038
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5038
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)