ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal31e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108659.1| Zea mays PCO103032 mRNA sequence Length = 915 Score = 335 bits (169), Expect = 8e-89 Identities = 232/253 (91%) Strand = Plus / Plus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 199 ccgcggcacaggagacggccgtgcacatcgtgtacgttgaccgccccgaggacgccgacc 258 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcagcgaggagaaggccaggg 139 | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 259 ctgaggagttccacatccgcaccctcacccccgtcctcggcagcgaacagaaggccaggg 318 Query: 140 acgcggtgctctaccactacaagcacgccgccagcggcttctctgcgaagctcaccgccg 199 |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 319 acgcagtgctctaccactacaagaacgccgccagcggcttctccgcgaagctcacccccc 378 Query: 200 agcaggtcgaggacctcaagaagcaaccaggtgtccttcaggttgtgccgagccagactc 259 |||||||| |||| |||||| ||||||||||||| || ||||||||||||||||||||| Sbjct: 379 agcaggtcaaggatctcaaggagcaaccaggtgttctccaggttgtgccgagccagactt 438 Query: 260 tccagctccatgg 272 |||||| ||||| Sbjct: 439 accagctacatgg 451
>gb|BT016306.1| Zea mays clone Contig139 mRNA sequence Length = 1985 Score = 327 bits (165), Expect = 2e-86 Identities = 231/253 (91%) Strand = Plus / Minus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 574 ccgcggcacaggaaacggccgtgcacatcgtgtacgttgaccgccccgaggacgccgacc 515 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcagcgaggagaaggccaggg 139 | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 514 ctgaggagttccacatccgcaccctcacccccgtcctcggcagcgaacagaaggccaggg 455 Query: 140 acgcggtgctctaccactacaagcacgccgccagcggcttctctgcgaagctcaccgccg 199 |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 454 acgcagtgctctaccactacaagaacgccgccagcggcttctccgcgaagctcacccccc 395 Query: 200 agcaggtcgaggacctcaagaagcaaccaggtgtccttcaggttgtgccgagccagactc 259 |||||||| |||| |||||| ||||||||||||| || ||||||||||||||||||||| Sbjct: 394 agcaggtcaaggatctcaaggagcaaccaggtgttctccaggttgtgccgagccagactt 335 Query: 260 tccagctccatgg 272 |||||| ||||| Sbjct: 334 accagctacatgg 322
>ref|XM_475283.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 330 Score = 315 bits (159), Expect = 7e-83 Identities = 231/255 (90%) Strand = Plus / Plus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||||||||||||| ||||||| ||||||||| | |||||||||| ||||||||||| Sbjct: 32 ccgcggcgcaggaggcgaccgtgcagatcgtctacctggaccgccccgcggacgccgacc 91 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcagcgaggagaaggccaggg 139 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || Sbjct: 92 ccgaggagttccacatccgcaccctcgcccccgtcctcggcagcgaggagaaggcaaagg 151 Query: 140 acgcggtgctctaccactacaagcacgccgccagcggcttctctgcgaagctcaccgccg 199 | ||||||||||||||||||||||||||||| ||||| |||||||| || || || || Sbjct: 152 aggcggtgctctaccactacaagcacgccgcaagcggtttctctgcaaaacttactcccc 211 Query: 200 agcaggtcgaggacctcaagaagcaaccaggtgtccttcaggttgtgccgagccagactc 259 ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 212 agcaggtcgaggagctcaagaagcaaccaggtgttcttcaggttgtaccaagccagacat 271 Query: 260 tccagctccatggac 274 |||||||||||||| Sbjct: 272 accagctccatggac 286
>dbj|AK058810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C11, full insert sequence Length = 657 Score = 315 bits (159), Expect = 7e-83 Identities = 231/255 (90%) Strand = Plus / Plus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||||||||||||| ||||||| ||||||||| | |||||||||| ||||||||||| Sbjct: 121 ccgcggcgcaggaggcgaccgtgcagatcgtctacctggaccgccccgcggacgccgacc 180 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcagcgaggagaaggccaggg 139 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || Sbjct: 181 ccgaggagttccacatccgcaccctcgcccccgtcctcggcagcgaggagaaggcaaagg 240 Query: 140 acgcggtgctctaccactacaagcacgccgccagcggcttctctgcgaagctcaccgccg 199 | ||||||||||||||||||||||||||||| ||||| |||||||| || || || || Sbjct: 241 aggcggtgctctaccactacaagcacgccgcaagcggtttctctgcaaaacttactcccc 300 Query: 200 agcaggtcgaggacctcaagaagcaaccaggtgtccttcaggttgtgccgagccagactc 259 ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 301 agcaggtcgaggagctcaagaagcaaccaggtgttcttcaggttgtaccaagccagacat 360 Query: 260 tccagctccatggac 274 |||||||||||||| Sbjct: 361 accagctccatggac 375
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04, complete sequence Length = 103458 Score = 157 bits (79), Expect = 4e-35 Identities = 97/103 (94%) Strand = Plus / Minus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||||||||||||| ||||||| ||||||||| | |||||||||| ||||||||||| Sbjct: 87809 ccgcggcgcaggaggcgaccgtgcagatcgtctacctggaccgccccgcggacgccgacc 87750 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcag 122 |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 87749 ccgaggagttccacatccgcaccctcgcccccgtcctcggcag 87707 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 119 gcagcgaggagaaggccagggacgcggtgctctaccactacaagcacgccgccagcggct 178 |||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 87477 gcagcgaggagaaggcaaaggaggcggtgctctaccactacaagcacgccgcaagcggtt 87418 Query: 179 tctctgcgaagctcaccgccgagcaggtcgaggacctcaaga 220 ||||||| || || || || ||||||||||||| ||||||| Sbjct: 87417 tctctgcaaaacttactccccagcaggtcgaggagctcaaga 87376 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 221 agcaaccaggtgtccttcaggttgtgccgagccagactctccagctccatggac 274 ||||||||||||| ||||||||||| || |||||||| |||||||||||||| Sbjct: 86301 agcaaccaggtgttcttcaggttgtaccaagccagacataccagctccatggac 86248
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 157 bits (79), Expect = 4e-35 Identities = 97/103 (94%) Strand = Plus / Minus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||||||||||||| ||||||| ||||||||| | |||||||||| ||||||||||| Sbjct: 51296 ccgcggcgcaggaggcgaccgtgcagatcgtctacctggaccgccccgcggacgccgacc 51237 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcag 122 |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 51236 ccgaggagttccacatccgcaccctcgcccccgtcctcggcag 51194 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 119 gcagcgaggagaaggccagggacgcggtgctctaccactacaagcacgccgccagcggct 178 |||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 50964 gcagcgaggagaaggcaaaggaggcggtgctctaccactacaagcacgccgcaagcggtt 50905 Query: 179 tctctgcgaagctcaccgccgagcaggtcgaggacctcaaga 220 ||||||| || || || || ||||||||||||| ||||||| Sbjct: 50904 tctctgcaaaacttactccccagcaggtcgaggagctcaaga 50863 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 221 agcaaccaggtgtccttcaggttgtgccgagccagactctccagctccatggac 274 ||||||||||||| ||||||||||| || |||||||| |||||||||||||| Sbjct: 49788 agcaaccaggtgttcttcaggttgtaccaagccagacataccagctccatggac 49735
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 4e-35 Identities = 97/103 (94%) Strand = Plus / Minus Query: 20 ccgcggcgcaggaggcggccgtgcacatcgtctacgtcgaccgccccgaggacgccgacc 79 ||||||||||||||||| ||||||| ||||||||| | |||||||||| ||||||||||| Sbjct: 21072431 ccgcggcgcaggaggcgaccgtgcagatcgtctacctggaccgccccgcggacgccgacc 21072372 Query: 80 ccgaggagttccacatccgcaccctctcccccgtcctcggcag 122 |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 21072371 ccgaggagttccacatccgcaccctcgcccccgtcctcggcag 21072329 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 119 gcagcgaggagaaggccagggacgcggtgctctaccactacaagcacgccgccagcggct 178 |||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 21072099 gcagcgaggagaaggcaaaggaggcggtgctctaccactacaagcacgccgcaagcggtt 21072040 Query: 179 tctctgcgaagctcaccgccgagcaggtcgaggacctcaaga 220 ||||||| || || || || ||||||||||||| ||||||| Sbjct: 21072039 tctctgcaaaacttactccccagcaggtcgaggagctcaaga 21071998 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 221 agcaaccaggtgtccttcaggttgtgccgagccagactctccagctccatggac 274 ||||||||||||| ||||||||||| || |||||||| |||||||||||||| Sbjct: 21070923 agcaaccaggtgttcttcaggttgtaccaagccagacataccagctccatggac 21070870
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 189 gctcaccgccgagcaggtcgaggac 213 ||||||||||||||||||||||||| Sbjct: 2086801 gctcaccgccgagcaggtcgaggac 2086777
>gb|AY110445.1| Zea mays CL5273_1 mRNA sequence Length = 827 Score = 48.1 bits (24), Expect = 0.027 Identities = 96/120 (80%) Strand = Plus / Minus Query: 75 cgaccccgaggagttccacatccgcaccctctcccccgtcctcggcagcgaggagaaggc 134 |||| |||||| || |||||| ||| |||| || |||| ||||||||||||||||| || Sbjct: 646 cgactccgaggcgtaccacatgagcatcctcgccaccgtgctcggcagcgaggagaaagc 587 Query: 135 cagggacgcggtgctctaccactacaagcacgccgccagcggcttctctgcgaagctcac 194 || | ||| || ||||| ||||||| |||||||||||| ||| | || |||||||| Sbjct: 586 caagcgggcgctgatctacagctacaaggccgccgccagcgggttcgccgccaagctcac 527
>emb|AJ006766.1|CAR6766 Cicer arietinum mRNA for putative Pi starvation-induced protein Length = 592 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 220 aagcaaccaggtgtccttcaggttgtgccgagccagactctccagctccat 270 |||||||||||||| ||||| ||||| || ||||||| || ||||||||| Sbjct: 328 aagcaaccaggtgttcttcaagttgttccaagccagaaacttcagctccat 378
>gb|AY109500.1| Zea mays CL1506_1 mRNA sequence Length = 3134 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 cgccgagcaggtcgaggacctc 216 |||||||||||||||||||||| Sbjct: 1435 cgccgagcaggtcgaggacctc 1414
>gb|AF153448.1|AF153448 Zea mays nitrate reductase (NR1) gene, complete cds Length = 8043 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 cgccgagcaggtcgaggacctc 216 |||||||||||||||||||||| Sbjct: 6157 cgccgagcaggtcgaggacctc 6136
>gb|M77792.1|MZENADHNR Zea mays nitrate reductase (NAR1S) mRNA, partial cds Length = 1801 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 cgccgagcaggtcgaggacctc 216 |||||||||||||||||||||| Sbjct: 102 cgccgagcaggtcgaggacctc 81
>ref|NM_190868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ggccgcggcgcaggaggcggc 38 ||||||||||||||||||||| Sbjct: 37 ggccgcggcgcaggaggcggc 17
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gcggccgcggcgcaggaggcg 36 ||||||||||||||||||||| Sbjct: 771878 gcggccgcggcgcaggaggcg 771858
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gctcaccgccgagcaggtcgaggac 213 |||||||||||||||||| |||||| Sbjct: 1816817 gctcaccgccgagcaggtggaggac 1816841
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gctcaccgccgagcaggtcgaggac 213 |||||||||||||||||| |||||| Sbjct: 3060887 gctcaccgccgagcaggtggaggac 3060911
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gctcaccgccgagcaggtcgaggac 213 |||||||||||||||||| |||||| Sbjct: 2790946 gctcaccgccgagcaggtggaggac 2790970
>ref|NM_136168.1| Drosophila melanogaster CG10662-RA (CG10662), mRNA Length = 2751 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ggtcgaggacctcaagaagca 224 ||||||||||||||||||||| Sbjct: 753 ggtcgaggacctcaagaagca 773
>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone BACR22E16, complete sequence Length = 164361 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ggtcgaggacctcaagaagca 224 ||||||||||||||||||||| Sbjct: 41794 ggtcgaggacctcaagaagca 41814
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ggccgcggcgcaggaggcggc 38 ||||||||||||||||||||| Sbjct: 33587109 ggccgcggcgcaggaggcggc 33587089
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ggccgcggcgcaggaggcggc 38 ||||||||||||||||||||| Sbjct: 132306 ggccgcggcgcaggaggcggc 132286
>gb|AF548005.1| Azoarcus evansii aerobic benzoate degradation gene cluster, complete sequence Length = 19112 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ggtcgaggacctcaagaagca 224 ||||||||||||||||||||| Sbjct: 18069 ggtcgaggacctcaagaagca 18089
>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C02 Length = 80086 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ggccgcggcgcaggaggcggc 38 ||||||||||||||||||||| Sbjct: 1981 ggccgcggcgcaggaggcggc 1961
>dbj|AK071275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087D20, full insert sequence Length = 1487 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ggccgcggcgcaggaggcggc 38 ||||||||||||||||||||| Sbjct: 109 ggccgcggcgcaggaggcggc 89
>gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73 of 83 of the complete sequence Length = 266287 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ggtcgaggacctcaagaagca 224 ||||||||||||||||||||| Sbjct: 223228 ggtcgaggacctcaagaagca 223248
>gb|U59305.1|HSU59305 Human ser-thr protein kinase PK428 mRNA, complete cds Length = 2785 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aggcggccgcggcgcaggagg 34 ||||||||||||||||||||| Sbjct: 188 aggcggccgcggcgcaggagg 168
>ref|NM_105853.3| Arabidopsis thaliana unknown protein AT1G71950 mRNA, complete cds Length = 720 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 368 caaccaggtgtgattcaagttgtgccaagccagact 403
>ref|XM_464897.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1966 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 112 aggcggcggcggcgcaggaggcgg 135
>ref|XM_470359.1| Oryza sativa (japonica cultivar-group), mRNA Length = 430 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctcggcagcgaggagaaggc 134 |||||||||||||||||||| Sbjct: 169 ctcggcagcgaggagaaggc 188
>gb|AY022754.1| Oryza sativa microsatellite MRG5079 containing (CCT)X9, genomic sequence Length = 227 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 152 aggcggcggcggcgcaggaggcgg 175
>gb|AY022734.1| Oryza sativa microsatellite MRG5059 containing (CCT)X8, closest to marker C980, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 152 aggcggcggcggcgcaggaggcgg 175
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 agcacgccgccagcggcttc 180 |||||||||||||||||||| Sbjct: 2389780 agcacgccgccagcggcttc 2389761
>ref|XM_542158.2| PREDICTED: Canis familiaris similar to CG4751-PA (LOC485040), mRNA Length = 1482 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ggcggccgcggcgcaggaggcggc 38 |||||| ||||||||||||||||| Sbjct: 196 ggcggcggcggcgcaggaggcggc 219
>ref|XM_784870.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 17, subfamily A, polypeptide 1 (LOC585029), mRNA Length = 1524 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agccagactctccagctcca 269 |||||||||||||||||||| Sbjct: 34 agccagactctccagctcca 15
>ref|XM_793485.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 1, subfamily B, polypeptide 1 (LOC594032), mRNA Length = 642 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agccagactctccagctcca 269 |||||||||||||||||||| Sbjct: 34 agccagactctccagctcca 15
>emb|AL121593.10|HSJ800C24 Human DNA sequence from clone RP4-800C24 on chromosome 20 Contains the RPL12P4 gene for ribosomal protein L12 pseudogene 4, complete sequence Length = 118150 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 agcaaccaggtgtccttcag 240 |||||||||||||||||||| Sbjct: 96594 agcaaccaggtgtccttcag 96613
>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166380 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 ttcctgaagtgtgtaaatgtaaac 446 |||||||||| ||||||||||||| Sbjct: 83392 ttcctgaagtttgtaaatgtaaac 83369
>ref|XM_778552.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 2, subfamily b, polypeptide 13 (LOC578381), mRNA Length = 1233 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agccagactctccagctcca 269 |||||||||||||||||||| Sbjct: 34 agccagactctccagctcca 15
>ref|XM_776193.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 1, subfamily B, polypeptide 1 (LOC575820), mRNA Length = 1353 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agccagactctccagctcca 269 |||||||||||||||||||| Sbjct: 103 agccagactctccagctcca 84
>emb|AJ271405.1|SRO271405 Streptomyces rochei sttO gene, sttN gene, sttM gene, sttL gene, sttK gene, sttJ gene, sttI gene, sttH gene, sttG gene, sttF gene and sttE gene, strain F20 Length = 13339 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gctcaccgccgagcaggtcgagga 212 |||||||||||||||| ||||||| Sbjct: 9762 gctcaccgccgagcagatcgagga 9785
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gcggccgcggcgcaggaggc 35 |||||||||||||||||||| Sbjct: 3460888 gcggccgcggcgcaggaggc 3460869
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaagctcaccgccgagcag 204 |||||||||||||||||||| Sbjct: 2774428 cgaagctcaccgccgagcag 2774447 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 caccgccgagcaggtcgagg 211 |||||||||||||||||||| Sbjct: 794754 caccgccgagcaggtcgagg 794773
>emb|CR406766.1| Gallus gallus finished cDNA, clone ChEST989d9 Length = 600 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ggcggccgcggcgcaggagg 34 |||||||||||||||||||| Sbjct: 421 ggcggccgcggcgcaggagg 402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 9081971 aggcggcggcggcgcaggaggcgg 9081994
>emb|BX817994.1|CNS0AED2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL55ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 505 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 298 caaccaggtgtgattcaagttgtgccaagccagact 333
>emb|BX817627.1|CNS0AEC6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZC09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 554 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 286 caaccaggtgtgattcaagttgtgccaagccagact 321
>emb|BX815875.1|CNS0ADFL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH14ZD06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1172 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 |||||||||||| |||| ||||||| ||||||||| Sbjct: 1004 caaccaggtgtcattcaacttgtgccaagccagact 1039
>gb|AC021665.7|AC021665 Arabidopsis thaliana chromosome 1 BAC F17M19 genomic sequence, complete sequence Length = 80413 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 52874 caaccaggtgtgattcaagttgtgccaagccagact 52839
>gb|BT004754.1| Arabidopsis thaliana At1g71950 gene, complete cds Length = 411 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 328 caaccaggtgtgattcaagttgtgccaagccagact 363
>gb|AY087697.1| Arabidopsis thaliana clone 37751 mRNA, complete sequence Length = 585 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 caaccaggtgtccttcaggttgtgccgagccagact 258 ||||||||||| |||| |||||||| ||||||||| Sbjct: 374 caaccaggtgtgattcaagttgtgccaagccagact 409
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgccgagcaggtcgaggacc 214 |||||||||||||||||||| Sbjct: 561246 cgccgagcaggtcgaggacc 561227
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gctcaccgccgagcaggtcg 208 |||||||||||||||||||| Sbjct: 1483207 gctcaccgccgagcaggtcg 1483226
>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1178F07 Length = 144454 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 122417 aggcggcggcggcgcaggaggcgg 122440
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 154580 aggcggcggcggcgcaggaggcgg 154603
>dbj|AK121130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075F04, full insert sequence Length = 621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctcggcagcgaggagaaggc 134 |||||||||||||||||||| Sbjct: 196 ctcggcagcgaggagaaggc 215
>emb|AJ224970.1|SSI224970 Spermatozopsis similis mRNA for 90 kD basal apparatus-protein Length = 2767 Score = 40.1 bits (20), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 gcancaggcggccgcggcgcagg 31 ||| ||||||||||||||||||| Sbjct: 1646 gcagcaggcggccgcggcgcagg 1668
>dbj|AK100835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D22, full insert sequence Length = 2036 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aggcggccgcggcgcaggaggcgg 37 ||||||| |||||||||||||||| Sbjct: 112 aggcggcggcggcgcaggaggcgg 135
>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome Length = 184427 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ccgcaccctctcccccgtcctcgg 119 |||||||||||||| ||||||||| Sbjct: 95615 ccgcaccctctccctcgtcctcgg 95638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,263,070 Number of Sequences: 3902068 Number of extensions: 3263070 Number of successful extensions: 111054 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109912 Number of HSP's gapped (non-prelim): 1141 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
