ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30o22 |
|---|---|
| Clone Library Name | barley_pub |
>EF1A2_HORVU (Q40034) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 34.3 bits (77), Expect = 0.081 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKKEPTG Sbjct: 420 TVAVGVIKSVEKKEPTG 436
>EF1A1_HORVU (P34824) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 34.3 bits (77), Expect = 0.081 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKKEPTG Sbjct: 420 TVAVGVIKSVEKKEPTG 436
>EF1A_VICFA (O24534) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKK+PTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A_PEA (Q41011) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKK+PTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A_MAIZE (Q41803) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKK+PTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A2_DAUCA (P34823) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKK+PTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A_SOYBN (P25698) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K+VEKK+PTG Sbjct: 420 TVAVGVIKNVEKKDPTG 436
>EF1A_ORYSA (O64937) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K+VEKK+PTG Sbjct: 420 TVAVGVIKNVEKKDPTG 436
>EF1A_ARATH (P13905) Elongation factor 1-alpha (EF-1-alpha) (eEF-1A)| Length = 449 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSV+KK+PTG Sbjct: 420 TVAVGVIKSVDKKDPTG 436
>EF1A1_DAUCA (P29521) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K+VEKK+PTG Sbjct: 420 TVAVGVIKAVEKKDPTG 436
>EF1A_WHEAT (Q03033) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 31.6 bits (70), Expect = 0.53 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K VEKK+PTG Sbjct: 420 TVAVGVIKGVEKKDPTG 436
>EF1A_MANES (O49169) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 31.6 bits (70), Expect = 0.53 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKK+P+G Sbjct: 420 TVAVGVIKSVEKKDPSG 436
>EF1A_TOBAC (P43643) Elongation factor 1-alpha (EF-1-alpha) (Vitronectin-like| adhesion protein 1) (PVN1) Length = 447 Score = 30.8 bits (68), Expect = 0.90 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K+V+KK+PTG Sbjct: 420 TVAVGVIKNVDKKDPTG 436
>EF1A_LYCES (P17786) Elongation factor 1-alpha (EF-1-alpha)| Length = 448 Score = 30.8 bits (68), Expect = 0.90 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV K+V+KK+PTG Sbjct: 420 TVAVGVVKNVDKKDPTG 436
>EF1A_COCIM (Q96WZ1) Elongation factor 1-alpha (EF-1-alpha)| Length = 460 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEK E TG Sbjct: 431 TVAVGVIKSVEKSEKTG 447
>ACH1_YEAST (P32316) Acetyl-CoA hydrolase (EC 3.1.2.1) (Acetyl-CoA deacylase)| (Acetyl-CoA acylase) Length = 526 Score = 28.9 bits (63), Expect = 3.4 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -3 Query: 272 ATLTDEVPPTQPNDTMTRALS 210 +T+ D+VPP P+D M+RA++ Sbjct: 231 STMRDQVPPNTPSDDMSRAIA 251
>EF1A_EUGGR (P14963) Elongation factor 1-alpha (EF-1-alpha)| Length = 445 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSV KKE TG Sbjct: 419 TVAVGVIKSVNKKENTG 435
>EF1C_PORPU (P50256) Elongation factor 1-alpha C (EF-1-alpha)| Length = 449 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = +1 Query: 16 TVAVGVXKSVEKKEPTG 66 TVAVGV KSVEKKE G Sbjct: 424 TVAVGVIKSVEKKEVEG 440
>YEMA_DROME (P25992) Yemanuclein-alpha| Length = 1002 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -3 Query: 236 NDTMTRALSSSNTSRHK*PKRLKQLSPPPNTATA-TIDVVKNLTPSHFFLIAALVTLA 66 +DT + +SSN+ + K + KQ S PP A + + LTP F +A T A Sbjct: 689 SDTDSATSASSNSLKRKLKEMPKQTSKPPKKKVAKQVPLQPQLTPHPQFQLAPAATAA 746
>PCDB3_PANTR (Q5DRD1) Protocadherin beta 3 precursor (PCDH-beta3)| Length = 796 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 221 RALSSSNTSRHK*PKRLKQLSPPPNTATATIDVV 120 R LS + ++HK +K PP +ATAT+ V+ Sbjct: 628 RLLSERDAAKHKLAVLVKDNGEPPRSATATLHVL 661
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 27.3 bits (59), Expect = 9.9 Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 5/92 (5%) Frame = -3 Query: 269 TLTDEVPPTQPNDTMTRALSSSNTSRHK*PKRLKQLSPPPNT-----ATATIDVVKNLTP 105 T T PPT S T+ P + +PPP T T T TP Sbjct: 1559 TTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTP 1618 Query: 104 SHFFLIAALVTLAPVGSFFSTLXITPTATVLP 9 S T P+ ST + PT T P Sbjct: 1619 SP-------PTTTPITPPTSTTTLPPTTTPSP 1643
>MUTL_RICCN (Q92FW6) DNA mismatch repair protein mutL| Length = 610 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 182 PKRLKQLSPPPNTATATIDVVKNLTPSH 99 P RLK L TAT+DVVK + +H Sbjct: 153 PARLKFLRADKTELTATVDVVKKIALAH 180
>DPM3_MOUSE (Q9D1Q4) Dolichol-phosphate mannosyltransferase subunit 3| (Dolichol-phosphate mannose synthase subunit 3) (Dolichyl-phosphate beta-D-mannosyltransferase subunit 3) (Mannose-P-dolichol synthase subunit 3) (MPD synthase subunit 3) (DPM synthase Length = 92 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +1 Query: 178 LGYLCREVFELLKALVIVSFGCVG-GTSSVNVATIY 282 L + CREV L A ++VS GC GT VAT + Sbjct: 30 LPFPCREVLWPLPAYLLVSAGCYALGTVGYRVATFH 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,675,939 Number of Sequences: 219361 Number of extensions: 505567 Number of successful extensions: 1739 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1739 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
