ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal31d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE010138.1| Pyrococcus furiosus DSM 3638, section 13 of 173 of the complete genome Length = 10516 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Plus Query: 536 tcagtatttttcttcccttaaaatc 560 ||||||||||||||||||||||||| Sbjct: 1700 tcagtatttttcttcccttaaaatc 1724
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.010 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 455 tacaagaacatttgcttcactgttt-ggatgtcgtgagtcacaacaaggtatg 506 |||||||||||| |||||||||||| |||||||| | |||| |||||||||| Sbjct: 6842785 tacaagaacattagcttcactgtttgggatgtcgggggtcaggacaaggtatg 6842837
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 50.1 bits (25), Expect = 0.010 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 455 tacaagaacatttgcttcactgttt-ggatgtcgtgagtcacaacaaggtatg 506 |||||||||||| |||||||||||| |||||||| | |||| |||||||||| Sbjct: 136919 tacaagaacattagcttcactgtttgggatgtcgggggtcaggacaaggtatg 136971
>ref|NM_186628.1| Oryza sativa (japonica cultivar-group), mRNA Length = 546 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 455 tacaagaacatttgcttcactgtttgg 481 |||||||||||| |||||||||||||| Sbjct: 172 tacaagaacattagcttcactgtttgg 198
>dbj|AP006629.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10B11, TM0008, complete sequence Length = 116223 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 455 tacaagaacatttgcttcactgtttgg 481 |||||||||||| |||||||||||||| Sbjct: 23832 tacaagaacattagcttcactgtttgg 23806
>gb|AC113438.17| Mus musculus chromosome 6, clone RP23-191I2, complete sequence Length = 221969 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 614 acctcagacctatctctctcaa 635 |||||||||||||||||||||| Sbjct: 21369 acctcagacctatctctctcaa 21390
>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence Length = 252503 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 614 acctcagacctatctctctcaa 635 |||||||||||||||||||||| Sbjct: 37148 acctcagacctatctctctcaa 37127
>emb|AL121575.24|HSJ914N13 Human DNA sequence from clone RP5-914N13 on chromosome 6q22.33-24.1 Contains the ARG1 gene for liver arginase, the CRSP3 gene for cofactor required for Sp1 transcriptional activation subunit 3 (130kD), the 5' end of the ENPP3 gene for ectonucleotide pyrophosphatase/phosphodiesterase 3 and a CpG island, complete sequence Length = 142436 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 ttcaaagatgatgaatatatat 205 |||||||||||||||||||||| Sbjct: 53370 ttcaaagatgatgaatatatat 53349
>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence Length = 165682 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 aggcttagtgtttcttaactga 38 |||||||||||||||||||||| Sbjct: 128283 aggcttagtgtttcttaactga 128262
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 202 atattgtataagataaatcaaaatat 227 |||||||||||||||||| ||||||| Sbjct: 42627100 atattgtataagataaataaaaatat 42627075
>gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, complete sequence Length = 148883 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 ttcaaagatgatgaatatatat 205 |||||||||||||||||||||| Sbjct: 13256 ttcaaagatgatgaatatatat 13235
>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence Length = 129785 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 ttggatctttcttggaggctta 23 |||||||||||||||||||||| Sbjct: 103151 ttggatctttcttggaggctta 103130
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 202 atattgtataagataaatcaaaatat 227 |||||||||||||||||| ||||||| Sbjct: 147983 atattgtataagataaataaaaatat 147958
>gb|AC009085.5|AC009085 Homo sapiens chromosome 16 clone RP11-368L12, complete sequence Length = 155860 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 ttcaaagatgatgaatatatat 205 |||||||||||||||||||||| Sbjct: 86748 ttcaaagatgatgaatatatat 86727
>gb|AC113271.10| Mus musculus chromosome 5, clone RP23-376H8, complete sequence Length = 185353 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 atgatgaatatatattgtata 211 ||||||||||||||||||||| Sbjct: 114077 atgatgaatatatattgtata 114057
>gb|AC124115.10| Mus musculus chromosome 10, clone RP24-377E13, complete sequence Length = 165796 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 aatgttttctatattctatct 536 ||||||||||||||||||||| Sbjct: 33411 aatgttttctatattctatct 33391
>gb|BC072941.1| Xenopus laevis histone H1(0)-1, mRNA (cDNA clone MGC:80509 IMAGE:5156970), complete cds Length = 2229 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 cacacatgattttattttctt 672 ||||||||||||||||||||| Sbjct: 1732 cacacatgattttattttctt 1752
>gb|BC054149.1| Xenopus laevis histone H1(0)-1, mRNA (cDNA clone IMAGE:6872175), partial cds Length = 1508 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 cacacatgattttattttctt 672 ||||||||||||||||||||| Sbjct: 998 cacacatgattttattttctt 1018
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aaatatcatatattgaatttg 242 ||||||||||||||||||||| Sbjct: 2040 aaatatcatatattgaatttg 2060
>ref|NM_052913.2| Homo sapiens KIAA1913 (KIAA1913), mRNA Length = 5042 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 taccacacatgattttatttt 669 ||||||||||||||||||||| Sbjct: 4042 taccacacatgattttatttt 4062
>gb|AC119864.9| Mus musculus chromosome 18, clone RP23-325I21, complete sequence Length = 194834 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tgcaatgttttctatattcta 533 ||||||||||||||||||||| Sbjct: 82104 tgcaatgttttctatattcta 82124
>gb|BC044246.1| Homo sapiens KIAA1913, mRNA (cDNA clone MGC:50847 IMAGE:5760073), complete cds Length = 3120 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 taccacacatgattttatttt 669 ||||||||||||||||||||| Sbjct: 1807 taccacacatgattttatttt 1827
>gb|AC098733.2| Mus musculus BAC clone RP23-103C10 from 19, complete sequence Length = 214382 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 tattctattagatttgcttat 118 ||||||||||||||||||||| Sbjct: 91757 tattctattagatttgcttat 91777
>emb|AL732479.6| Human DNA sequence from clone RP11-351D13 on chromosome 10, complete sequence Length = 97781 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gcccatctccaaagcctactt 358 ||||||||||||||||||||| Sbjct: 56447 gcccatctccaaagcctactt 56427
>emb|AL356294.28| Human DNA sequence from clone RP11-49F20 on chromosome 13 Contains a glycogenin (GYG) pseudogene, complete sequence Length = 135345 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 654 cacatgattttattttctttg 674 ||||||||||||||||||||| Sbjct: 52178 cacatgattttattttctttg 52198
>emb|AL137251.5| Human DNA sequence from clone RP1-141N5 on chromosome 6 Contains the 3' end of the gene for KIAA1913 protein, complete sequence Length = 122354 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 taccacacatgattttatttt 669 ||||||||||||||||||||| Sbjct: 10430 taccacacatgattttatttt 10450
>gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186298 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gaattttaattttcaaagatg 193 ||||||||||||||||||||| Sbjct: 73050 gaattttaattttcaaagatg 73070
>gb|AC068780.31| Homo sapiens 12 BAC RP11-163B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105836 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 ttcccttaaaatctttgtaca 568 ||||||||||||||||||||| Sbjct: 53338 ttcccttaaaatctttgtaca 53318
>emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in linkage group 2, complete sequence Length = 81705 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 aatcaaaatatcatatattga 237 ||||||||||||||||||||| Sbjct: 39277 aatcaaaatatcatatattga 39257
>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds Length = 304837 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 tcctccttattctattagatt 111 ||||||||||||||||||||| Sbjct: 111387 tcctccttattctattagatt 111367
>gb|AC139019.3| Homo sapiens chromosome 8, clone CTD-3091F23, complete sequence Length = 134096 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cttggaggcttagtgtttctt 32 ||||||||||||||||||||| Sbjct: 70603 cttggaggcttagtgtttctt 70623
>gb|AC138331.4| Homo sapiens 12 BAC RP11-781A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113301 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 ttcccttaaaatctttgtaca 568 ||||||||||||||||||||| Sbjct: 60853 ttcccttaaaatctttgtaca 60833
>dbj|AB052099.1| Homo sapiens mRNA for HBE61, complete cds Length = 5042 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 taccacacatgattttatttt 669 ||||||||||||||||||||| Sbjct: 4042 taccacacatgattttatttt 4062
>dbj|AP002784.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-680H20, complete sequence Length = 179051 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ttttaattttcaaagatgatg 196 ||||||||||||||||||||| Sbjct: 20805 ttttaattttcaaagatgatg 20825
>emb|CT485675.4| RP43-034D18, complete sequence Length = 163081 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 tcctccttattctattagatt 111 ||||||||||||||||||||| Sbjct: 97339 tcctccttattctattagatt 97359
>dbj|AP005664.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1588E7, complete sequence Length = 156544 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 cttggaggcttagtgtttctt 32 ||||||||||||||||||||| Sbjct: 88864 cttggaggcttagtgtttctt 88844
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ttttaattttcaaagatgatg 196 ||||||||||||||||||||| Sbjct: 1705082 ttttaattttcaaagatgatg 1705062
>emb|AL953896.11| Zebrafish DNA sequence from clone CH211-119O8, complete sequence Length = 158018 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 aatcaaaatatcatatattga 237 ||||||||||||||||||||| Sbjct: 27171 aatcaaaatatcatatattga 27151
>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172649 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 tcctccttattctattagatt 111 ||||||||||||||||||||| Sbjct: 97562 tcctccttattctattagatt 97582
>dbj|AB067500.1| Homo sapiens mRNA for KIAA1913 protein, partial cds Length = 3512 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 taccacacatgattttatttt 669 ||||||||||||||||||||| Sbjct: 2535 taccacacatgattttatttt 2555
>gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, complete sequence Length = 216364 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 cttagttcatagttggattt 452 |||||||||||||||||||| Sbjct: 66126 cttagttcatagttggattt 66107
>gb|AC149330.2| Phakopsora pachyrhizi clone JGIAFNA-13C18, complete sequence Length = 33954 Score = 40.1 bits (20), Expect = 9.5 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 553 ttaaaatctttgta-caaattgttccatttcatgtt 587 |||||||||||||| ||||||||| |||||||||| Sbjct: 16703 ttaaaatctttgtatgaaattgttctatttcatgtt 16668
>gb|BT016607.1| Zea mays clone Contig440 mRNA sequence Length = 1010 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 331 aagaacattagcttcactgtttgg 354
>gb|BT016788.1| Zea mays clone Contig621 mRNA sequence Length = 976 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 300 aagaacattagcttcactgtttgg 323
>gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, complete sequence Length = 172369 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 agctgatgcaatgttttcta 526 |||||||||||||||||||| Sbjct: 89739 agctgatgcaatgttttcta 89720
>ref|XM_362833.1| Magnaporthe grisea 70-15 predicted protein (MG08215.4) partial mRNA Length = 405 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aattttcaaagatgatgaat 199 |||||||||||||||||||| Sbjct: 18 aattttcaaagatgatgaat 37
>gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, complete sequence Length = 198294 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccaaagcctactttcttgaa 365 |||||||||||||||||||| Sbjct: 21055 ccaaagcctactttcttgaa 21074
>emb|CR762406.10| Zebrafish DNA sequence from clone DKEY-13D23 in linkage group 1, complete sequence Length = 144021 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 aaacaacatctacttacact 430 |||||||||||||||||||| Sbjct: 132851 aaacaacatctacttacact 132870
>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12, complete sequence Length = 219782 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 tatttttcttcccttaaaat 559 |||||||||||||||||||| Sbjct: 51813 tatttttcttcccttaaaat 51794
>gb|AC121581.3| Mus musculus BAC clone RP23-256O22 from chromosome 3, complete sequence Length = 159314 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 ttttcttcccttaaaatctttgta 566 |||||||| ||||||||||||||| Sbjct: 68091 ttttcttctcttaaaatctttgta 68068
>gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, complete sequence Length = 253744 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cagatttgagagtacatctg 170 |||||||||||||||||||| Sbjct: 33388 cagatttgagagtacatctg 33407
>gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complete sequence Length = 174327 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 652 cacacatgattttattttct 671 |||||||||||||||||||| Sbjct: 60990 cacacatgattttattttct 61009
>gb|AC006482.3| Homo sapiens BAC clone RP11-455B5 from 7, complete sequence Length = 180568 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agtttcattctccatttcat 263 |||||||||||||||||||| Sbjct: 59430 agtttcattctccatttcat 59449
>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence Length = 250880 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ttttaattttcaaagatgat 195 |||||||||||||||||||| Sbjct: 106535 ttttaattttcaaagatgat 106554
>gb|AC146166.2| Pan troglodytes BAC clone RP43-1B23 from 7, complete sequence Length = 165177 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agtttcattctccatttcat 263 |||||||||||||||||||| Sbjct: 104252 agtttcattctccatttcat 104233
>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence Length = 115175 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcatatattgaatttgtagt 246 |||||||||||||||||||| Sbjct: 58199 tcatatattgaatttgtagt 58218
>emb|AL590103.12| Human DNA sequence from clone RP11-132G19 on chromosome 1 Contains a novel gene, the 3' end of the HSPG2 gene for heparan sulfate proteoglycan 2 (perlecan), the 5' end of the USP31 gene for ubiquitin specific protease 31 and a CpG island, complete sequence Length = 175162 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ataaatcaaaatatcatata 233 |||||||||||||||||||| Sbjct: 42136 ataaatcaaaatatcatata 42155
>emb|AL591062.8| Human DNA sequence from clone RP11-642P14 on chromosome 6, complete sequence Length = 46206 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tgaatttgtagtttcattct 254 |||||||||||||||||||| Sbjct: 8552 tgaatttgtagtttcattct 8533
>emb|AL391986.12| Human DNA sequence from clone RP11-426E5 on chromosome 10 Contains the gene for mitochondrial glycerol 3-phosphate acyltransferase (KIAA1560) (GPAM, MGC26846) and the TECTB gene for tectorin beta, complete sequence Length = 196657 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 tcagtatttttcttccctta 555 |||||||||||||||||||| Sbjct: 75510 tcagtatttttcttccctta 75491
>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains part of a novel gene (KIAA0916)amd two novel genes, complete sequence Length = 97477 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 atgcaatgttttctatattctatc 535 |||||||||||| ||||||||||| Sbjct: 34517 atgcaatgttttgtatattctatc 34540
>emb|AL162591.16| Human DNA sequence from clone RP11-350G8 on chromosome 1 Contains the 3' end of the AQP10 gene for aquaporin 10, the ATP8B2 gene for ATPase, Class I, type 8B, member 2, a mitochondrial ribosomal protein S33 (MRPS33) pseudogene, a novel gene, the IL6R gene for interleukin 6 receptor, a proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 (PSMD8) pseduogene, a novel gene (LOC126669), the 5' end of a novel gene (DKFZp434M202) and a CpG island, complete sequence Length = 201167 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 41263 acatctgctgaattttaatt 41244
>gb|AY225128.1| Vibrio parahaemolyticus lateral flagellar gene cluster, complete sequence, and trypsin-like serine protease gene, complete cds Length = 10400 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 437 gttcatagttggattttttacaagaaca 464 |||||| |||||||||||||| |||||| Sbjct: 9999 gttcatggttggattttttaccagaaca 10026
>gb|AC117494.3| Homo sapiens 12 BAC RP11-3K15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105045 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 acatgattttattttctttg 674 |||||||||||||||||||| Sbjct: 85033 acatgattttattttctttg 85052
>gb|AC157926.4| Mus musculus chromosome 3, clone RP24-61J18, complete sequence Length = 231722 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cagatttgagagtacatctg 170 |||||||||||||||||||| Sbjct: 78861 cagatttgagagtacatctg 78842
>emb|AL021332.1|HS398A12 Human DNA sequence from clone RP3-398A12 on chromosome 6p23-25.1, complete sequence Length = 90169 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 acatgattttattttctttg 674 |||||||||||||||||||| Sbjct: 73198 acatgattttattttctttg 73217
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 atgaatatatattgtataagataa 217 ||||||||||||| |||||||||| Sbjct: 1173388 atgaatatatattttataagataa 1173365
>emb|AL445563.1|MPULM01 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3 Length = 327650 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 tagttggattttttacaaga 461 |||||||||||||||||||| Sbjct: 290986 tagttggattttttacaaga 291005
>emb|AJ421017.1|GHI421017 Gossypium hirsutum mRNA for ADP-ribosylation factor (ARF1 gene) Length = 828 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 305 aagaacattagcttcactgtttgg 328
>emb|CR936667.1| Homo sapiens mRNA; cDNA DKFZp451D1511 (from clone DKFZp451D1511) Length = 5635 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 2480 acatctgctgaattttaatt 2461
>emb|CR936736.1| Homo sapiens mRNA; cDNA DKFZp686E14106 (from clone DKFZp686E14106) Length = 6866 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 3712 acatctgctgaattttaatt 3693
>emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chromosome 11, complete sequence Length = 164120 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 656 catgattttattttctttgc 675 |||||||||||||||||||| Sbjct: 121506 catgattttattttctttgc 121487
>gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, complete sequence Length = 200326 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ttgtagtttcattctccatttcat 263 ||||||||| |||||||||||||| Sbjct: 15700 ttgtagtttgattctccatttcat 15723
>gb|AC104956.6| Homo sapiens chromosome 18, clone RP11-646H8, complete sequence Length = 157587 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 tacaaattgttccatttcat 584 |||||||||||||||||||| Sbjct: 54556 tacaaattgttccatttcat 54575
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 437 gttcatagttggattttttacaagaaca 464 |||||| |||||||||||||| |||||| Sbjct: 1633484 gttcatggttggattttttaccagaaca 1633457
>dbj|AK126006.1| Homo sapiens cDNA FLJ44018 fis, clone TESTI4026079 Length = 2894 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 2302 acatctgctgaattttaatt 2283
>gb|AC104367.6| Homo sapiens chromosome 18, clone RP11-126G14, complete sequence Length = 163931 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 tacaaattgttccatttcat 584 |||||||||||||||||||| Sbjct: 137120 tacaaattgttccatttcat 137101
>gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, complete sequence Length = 188095 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 agctgatgcaatgttttcta 526 |||||||||||||||||||| Sbjct: 75005 agctgatgcaatgttttcta 75024
>emb|BX935451.2| Gallus gallus finished cDNA, clone ChEST250g2 Length = 1387 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 655 acatgattttattttctttg 674 |||||||||||||||||||| Sbjct: 1371 acatgattttattttctttg 1352
>gb|AC157353.2| Mus musculus BAC clone RP24-236H23 from chromosome 12, complete sequence Length = 188463 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 atttgcttattctttccatg 128 |||||||||||||||||||| Sbjct: 159526 atttgcttattctttccatg 159507
>dbj|AK028719.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732444B01 product:unclassifiable, full insert sequence Length = 3739 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 cttagttcatagttggattt 452 |||||||||||||||||||| Sbjct: 1116 cttagttcatagttggattt 1135
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atatattgaatttgtagttt 248 |||||||||||||||||||| Sbjct: 149304 atatattgaatttgtagttt 149323
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 caatttgtgtgttgtcaggtccca 73 ||||||||||| |||||||||||| Sbjct: 20768344 caatttgtgtggtgtcaggtccca 20768321
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 tttttacaagaacatttgct 470 |||||||||||||||||||| Sbjct: 21465950 tttttacaagaacatttgct 21465931
>gb|AC146028.2| Pan troglodytes BAC clone RP43-123H13 from chromosome 7, complete sequence Length = 173456 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agtttcattctccatttcat 263 |||||||||||||||||||| Sbjct: 123028 agtttcattctccatttcat 123009
>gb|AY217756.1| Gossypium hirsutum ADP-ribosylation factor 1 (ARF1) mRNA, complete cds Length = 1008 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 421 aagaacattagcttcactgtttgg 444
>gb|AY217755.1| Gossypium hirsutum ARF1-like GTP-binding protein mRNA, complete cds Length = 1085 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 497 aagaacattagcttcactgtttgg 520
>gb|AC084442.1|AC084442 Caenorhabditis briggsae cosmid CB006H06, complete sequence Length = 88882 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ctccttattctattagattt 112 |||||||||||||||||||| Sbjct: 5864 ctccttattctattagattt 5883
>gb|AY197496.1| Gossypium hirsutum ADP-ribosylation factor 1 (ARF1) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 625 aagaacattagcttcactgtttgg 648
>gb|AF202851.1|AF202851 Galaxias vulgaris from Maruia River tributary, Buller system microsatellite GVU-4 sequence Length = 357 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 227 tcatatattgaatttgtagtttcattct 254 |||| |||||| |||||||||||||||| Sbjct: 75 tcatttattgactttgtagtttcattct 48
>gb|AF202850.1|AF202850 Galaxias vulgaris from Caves River, Buller system microsatellite GVU-4 sequence Length = 358 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 227 tcatatattgaatttgtagtttcattct 254 |||| |||||| |||||||||||||||| Sbjct: 66 tcatttattgactttgtagtttcattct 39
>gb|AY189719.1| Gossypium hirsutum ADP-ribosylation factor (ARF) gene, exons 1 through 7 and complete cds Length = 4356 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 1013 aagaacattagcttcactgtttgg 1036
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gaattttaattttcaaagat 192 |||||||||||||||||||| Sbjct: 494937 gaattttaattttcaaagat 494956
>emb|BX649381.5| Mouse DNA sequence from clone RP23-245K23 on chromosome 2, complete sequence Length = 195508 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tacatctgctgaattttaattttc 186 ||||||| |||||||||||||||| Sbjct: 48664 tacatcttctgaattttaattttc 48641
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 tttttacaagaacatttgct 470 |||||||||||||||||||| Sbjct: 23134 tttttacaagaacatttgct 23115
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 tttttacaagaacatttgct 470 |||||||||||||||||||| Sbjct: 100450 tttttacaagaacatttgct 100431
>emb|BX247876.6| Zebrafish DNA sequence from clone CH211-271B14 in linkage group 5, complete sequence Length = 176246 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 catttgcttcactgtttgga 482 |||||||||||||||||||| Sbjct: 175677 catttgcttcactgtttgga 175658
>emb|BX004768.5| Zebrafish DNA sequence from clone CH211-15L16, complete sequence Length = 180305 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 atatatattgtataagataa 217 |||||||||||||||||||| Sbjct: 103640 atatatattgtataagataa 103621
>emb|AL663026.13| Mouse DNA sequence from clone RP23-224M19 on chromosome X, complete sequence Length = 237481 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 agtacatctgctgaatttta 180 |||||||||||||||||||| Sbjct: 89348 agtacatctgctgaatttta 89329
>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6 Length = 79459 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 ttattttctttgcggacatc 682 |||||||||||||||||||| Sbjct: 6347 ttattttctttgcggacatc 6366
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 caatttgtgtgttgtcaggtccca 73 ||||||||||| |||||||||||| Sbjct: 140797 caatttgtgtggtgtcaggtccca 140774
>emb|AJ337610.1|HSA337610 Homo sapiens genomic sequence surrounding NotI site, clone NL6-IP14R Length = 615 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 652 cacacatgattttattttct 671 |||||||||||||||||||| Sbjct: 527 cacacatgattttattttct 508
>ref|NM_001010846.1| Homo sapiens Src homology 2 domain containing E (SHE), mRNA Length = 6243 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 3101 acatctgctgaattttaatt 3082
>gb|AC005871.3|AC005871 citb_109_p_11, complete sequence Length = 186418 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 attctattagatttgcttat 118 |||||||||||||||||||| Sbjct: 58509 attctattagatttgcttat 58490
>gb|AY104231.1| Zea mays PCO085486 mRNA sequence Length = 993 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aagaacatttgcttcactgtttgg 481 ||||||||| |||||||||||||| Sbjct: 318 aagaacattagcttcactgtttgg 341
>gb|AY858764.1| Equine infectious anemia virus isolate 7pr21tig envelope protein gp90 (env) gene, partial cds Length = 753 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 gagaataatactgctataattggc 399 |||||||||||||||| ||||||| Sbjct: 365 gagaataatactgctagaattggc 388
>emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 in linkage group 15, complete sequence Length = 179458 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 aaaatatcatatattgaatt 240 |||||||||||||||||||| Sbjct: 112294 aaaatatcatatattgaatt 112313 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 aaaatatcatatattgaatt 240 |||||||||||||||||||| Sbjct: 111451 aaaatatcatatattgaatt 111470
>gb|AC173113.4| Mus musculus BAC clone RP23-120D6 from chromosome 3, complete sequence Length = 172004 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tgaatttgtagtttcattct 254 |||||||||||||||||||| Sbjct: 71265 tgaatttgtagtttcattct 71284
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 tataagataaatcaaaatatcata 231 ||||||||||||||||||| |||| Sbjct: 2904570 tataagataaatcaaaataacata 2904593
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atatattgaatttgtagttt 248 |||||||||||||||||||| Sbjct: 149304 atatattgaatttgtagttt 149323
>gb|AC099724.7| Mus musculus chromosome 18, clone RP23-458P14, complete sequence Length = 183108 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ttttaattttcaaagatgat 195 |||||||||||||||||||| Sbjct: 15078 ttttaattttcaaagatgat 15059
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atatattgaatttgtagttt 248 |||||||||||||||||||| Sbjct: 100913 atatattgaatttgtagttt 100932
>gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromosome unknown, complete sequence Length = 209299 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 tggattttttacaagaacatttgc 469 ||||||||||| |||||||||||| Sbjct: 120901 tggattttttagaagaacatttgc 120878
>gb|AC135289.3| Mus musculus BAC clone RP23-279D12 from 3, complete sequence Length = 180967 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tgaatttgtagtttcattct 254 |||||||||||||||||||| Sbjct: 25394 tgaatttgtagtttcattct 25375
>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11, complete sequence Length = 178231 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 agaataatactgctataatt 396 |||||||||||||||||||| Sbjct: 6928 agaataatactgctataatt 6909
>dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297b, complete sequence Length = 43490 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tatcatatattgaatttgta 244 |||||||||||||||||||| Sbjct: 43417 tatcatatattgaatttgta 43398
>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete sequence Length = 227581 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 656 catgattttattttctttgc 675 |||||||||||||||||||| Sbjct: 3033 catgattttattttctttgc 3014
>emb|AL645684.16| Mouse DNA sequence from clone RP23-35E7 on chromosome 11, complete sequence Length = 122461 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccaaagcctactttcttgaa 365 |||||||||||||||||||| Sbjct: 118402 ccaaagcctactttcttgaa 118383
>dbj|AK074067.1| Homo sapiens mRNA for FLJ00138 protein Length = 5595 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acatctgctgaattttaatt 183 |||||||||||||||||||| Sbjct: 2455 acatctgctgaattttaatt 2436 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,493,835 Number of Sequences: 3902068 Number of extensions: 9493835 Number of successful extensions: 233248 Number of sequences better than 10.0: 118 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 232353 Number of HSP's gapped (non-prelim): 897 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
