>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score =  114 bits (286), Expect = 2e-25
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 1/172 (0%)
 Frame = +3

Query: 9   YGGFREAVKGL-EVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAA 185
           Y  FR+AV+    VR VL  PE+VK  P  + LE G IPT   LG + P     D +SA 
Sbjct: 159 YTQFRKAVEAQGRVRPVLSTPEQVKSPP--SGLEEGPIPTFDSLGQTEP---LDDCRSAF 213

Query: 186 GSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRF 365
                GGE EAL RLK +  +       A    T+N + G +FS K SPWLA GC+SPR+
Sbjct: 214 PCR--GGETEALARLKHYFWDTNAV---ATYKETRNGMIGVDFSTKFSPWLALGCISPRY 268

Query: 366 MYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           +YE++KK+ +            + T++  T W++FELLWRD+F+FV  KY +
Sbjct: 269 IYEQIKKYEV------------ERTANQSTYWVIFELLWRDYFKFVALKYGN 308

>CRYD_XENLA (Q75WS4) Cryptochrome DASH|
          Length = 523

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 1/170 (0%)
 Frame = +3

Query: 9   YGGFREAVKGL-EVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAA 185
           Y  FR+AV+   +VR     P+++K  P+ + LE G +P+  +     P     D ++A 
Sbjct: 160 YTQFRKAVETQGKVRPTFQMPDKLK--PLPSGLEEGSVPSHEDFDQQDP---LTDPRTAF 214

Query: 186 GSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRF 365
             +  GGE++AL+RL+ +  E  +  +   KD T+N + G ++S K +PWLA GC+SPR+
Sbjct: 215 PCS--GGESQALQRLEHYFWETNLVAS--YKD-TRNGLIGLDYSTKFAPWLALGCVSPRY 269

Query: 366 MYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 515
           +YE++ K+            + + T++  T W++FELLWRD+FRFV  KY
Sbjct: 270 IYEQIGKY------------EKERTANQSTYWVIFELLWRDYFRFVALKY 307

>CRYD_NATPD (Q3IPX9) Cryptochrome DASH|
          Length = 474

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 56/167 (33%), Positives = 87/167 (52%)
 Frame = +3

Query: 21  REAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLI 200
           +E      VR    APE V   P  + L PG +PT+  LG+S PP     +   A     
Sbjct: 158 KETEAAATVRDPRSAPETV---PTPDGLTPGPVPTVESLGVSEPP-----TDDRAVLEFE 209

Query: 201 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 380
           GGE+    R++ +  E     +     +T+N + GA++S K SPWLA GCLSPR+++ E+
Sbjct: 210 GGESAGKRRVESYIWE---GDHLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWLHREV 266

Query: 381 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           +++            + +  ++  T WL+FEL WRDFF+F  +KY +
Sbjct: 267 ERY------------EDERVANEDTYWLVFELAWRDFFQFQFEKYGA 301

>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 4/176 (2%)
 Frame = +3

Query: 9   YGGFREAVKGLE-VRKVLDAPEEVKCVPMKNVLEPGD---IPTLGELGLSAPPAMAQDSK 176
           Y  FR+AV+    VR     P  +   P   + E G    +PTL  LGLS        +K
Sbjct: 251 YTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSM-------TK 303

Query: 177 SAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLS 356
           +  G + +GGE+ AL R+ ++  +   +    V   T+N + G ++S K SPWLA+G LS
Sbjct: 304 AEKGMHFVGGESAALGRVHEYFWK---KDQLKVYKETRNGMLGPDYSTKFSPWLASGSLS 360

Query: 357 PRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSA 524
           PR++ EE+K++  + I + S            T W++FEL+WRD+FRF++ KY ++
Sbjct: 361 PRYICEEVKRYEKQRIANDS------------TYWVLFELIWRDYFRFISAKYGNS 404

>CRYD_SYNY3 (P77967) Cryptochrome DASH|
          Length = 489

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 33  KGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPA-----MAQDSKSAAGSNL 197
           K + +R    AP ++  +P  N+          +L L+APP      +  D +S      
Sbjct: 167 KKISIRPCFFAPSQL--LPSPNI----------KLELTAPPPEFFPQINFDHRSVLAFQ- 213

Query: 198 IGGEAEALERLKKFAAECCMQPNKAVKD--STQNSIYGANFSCKISPWLATGCLSPRFMY 371
            GGE   L RL+ +           +KD   T+N + GA++S K SPWLA GCLSPRF+Y
Sbjct: 214 -GGETAGLARLQDY-----FWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIY 267

Query: 372 EELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           +E+K++            + +  S+  T+WL+FELLWRDFFRFV +KY +
Sbjct: 268 QEVKRY------------EQERVSNDSTHWLIFELLWRDFFRFVAQKYGN 305

>CRYD_GLOVI (Q7NMD1) Cryptochrome DASH|
          Length = 500

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 1/167 (0%)
 Frame = +3

Query: 18  FREAV-KGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSN 194
           FR+ V +   +   L AP ++  +P    ++PG+IP L +LGL +P      +   A   
Sbjct: 158 FRKQVERSAAINPPLPAPAKLPPLP---AVDPGEIPQLADLGLESPV-----TDERAVLQ 209

Query: 195 LIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYE 374
             GGE   L RL+++  +  +   K+ K  T+N + GA++S K S WLA GCLS R+++E
Sbjct: 210 FKGGETSGLARLEEYFWQKSLL--KSYKQ-TRNGMLGADYSSKFSAWLALGCLSARYIHE 266

Query: 375 ELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 515
           +++ +  + I + S            T WL+FELLWRD+FRF+  K+
Sbjct: 267 QVQTYETKRIKNDS------------TYWLIFELLWRDYFRFIAAKH 301

>CRYD_LYCES (Q38JU2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
           (Cryptochrome-3)
          Length = 577

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
 Frame = +3

Query: 9   YGGFREAVK-GLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAA 185
           Y  FR++V+   +VR     P      P   V + G +P + ELGL       Q  K + 
Sbjct: 246 YTQFRKSVEYKSKVRNCTKLPTSFG--PPPEVGDWGHVPQVSELGL-------QQEKVSK 296

Query: 186 GSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRF 365
           G N +GGE+ AL R+  +  +   +    V   T+N + GA++S K SPWLA+G LSPRF
Sbjct: 297 GMNFVGGESAALGRVHDYFWK---KDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRF 353

Query: 366 MYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           + EE+K++            + +  S+  T W++FEL+WRD+F F++ K ++
Sbjct: 354 IDEEVKRY------------EKERLSNDSTYWVLFELIWRDYFGFLSIKLAN 393

>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 569

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
 Frame = +3

Query: 9   YGGFREAVKG-LEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAA 185
           Y  FR++V+    +R     P  +   P  +V + GD+PTL +LG+       +  +   
Sbjct: 238 YTQFRKSVEAKCSIRSSTRIP--LSLGPTPSVDDWGDVPTLEKLGV-------EPQEVTR 288

Query: 186 GSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRF 365
           G   +GGE+  + R+ ++  +   +    V   T+N + G ++S K SPWLA GC+SPRF
Sbjct: 289 GMRFVGGESAGVGRVFEYFWK---KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRF 345

Query: 366 MYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKK 512
           +YEE++++    + + S            T W++FEL+WRD+FRF++ K
Sbjct: 346 IYEEVQRYEKERVANNS------------TYWVLFELIWRDYFRFLSIK 382

>CRYD_RHOBA (Q7UJB1) Cryptochrome DASH|
          Length = 488

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 53/167 (31%), Positives = 86/167 (51%)
 Frame = +3

Query: 21  REAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLI 200
           +E  K  E R  L+ P  +     + V   GDIPTL  LGLS PP    D +    +   
Sbjct: 157 KEIEKQCEARSPLEEPIRIHGTLPEEV-NAGDIPTLESLGLSTPPL---DDRCL--NQFT 210

Query: 201 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 380
           GG+  A +R++++      +    V   T+N +   N S K SPWLA GCLSPR + + +
Sbjct: 211 GGQNAAQQRMEEYIWN---EDRLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHV 267

Query: 381 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           +++            + +   +  T W++FELLWRD+FR++++K+ +
Sbjct: 268 RRY------------EEERVKNKSTYWMIFELLWRDYFRWISRKHGA 302

>CRYD_OSTTA (Q5IFN2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 546

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
 Frame = +3

Query: 18  FREAVKG-LEVRKVLDAP--EEVKCVP-----MKNVLEPGDIP-TLGELGLSAPPAMAQD 170
           FR  V+   +VR V+ AP   E+  VP      + + +P D+P    E+ +     +   
Sbjct: 175 FRNKVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDC 234

Query: 171 SKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGC 350
               +  +  GGE+ AL R+K +  E       A    T+N + G ++S K++PWLA GC
Sbjct: 235 LDERSVLDFKGGESNALARVKYYLWE---SDRLATYFETRNGMLGGDYSTKLAPWLALGC 291

Query: 351 LSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           +SPR +  E++++            + +   +  T W++FEL+WRDFF+F   K+ +
Sbjct: 292 VSPRHVVSEIRRY------------ESERVENKSTYWVIFELIWRDFFKFFALKHGN 336

>CRYD_VIBPA (Q87JP5) Cryptochrome DASH|
          Length = 445

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 48/166 (28%), Positives = 78/166 (46%)
 Frame = +3

Query: 18  FREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNL 197
           FR+ V+G+++   +DAP  +  +P     +   +PTL               +SA  S  
Sbjct: 157 FRKCVEGIDIAHPIDAPSRLPPMP-----KGAQLPTLSSFYFD---------ESALFS-- 200

Query: 198 IGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEE 377
            GGE   L   +++         K     T+N + G  +S K SPWLA GC+SPR ++  
Sbjct: 201 -GGEWSGLAHCRRYFFSGLASSYK----ETRNGLDGMAYSTKFSPWLALGCVSPRMIHAM 255

Query: 378 LKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 515
           LK++           +   G +D+ T W+ FELLWR++F +  + Y
Sbjct: 256 LKQY-----------EQTQGANDS-TYWIYFELLWREYFYWYARCY 289

>CRYD_NEUCR (Q7SI68) Putative crytochrome DASH, mitochondrial precursor|
          Length = 745

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
 Frame = +3

Query: 87  PMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPN 266
           P+KN L+  D+P   E   S+ P               GGE  A +R+        M   
Sbjct: 243 PVKNFLK--DLPDFPEKAESSHPFR-------------GGETSAHKRIDHLVLSGGM--- 284

Query: 267 KAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPK----DGD 434
           K+ KDS +N + G +FS K+S +LA GC++ R ++     HA+ A   G+  K    DG 
Sbjct: 285 KSYKDS-RNGLLGPDFSTKLSAYLAQGCVTARQIH-----HALVAYEDGTGTKYKGADGF 338

Query: 435 GTSD-AGTNWLMFELLWRDFFRFVTKKY 515
           G  D  GT  +  ELLWRD+ R   +KY
Sbjct: 339 GEGDNQGTETVRMELLWRDYMRLCHQKY 366

>CRYD_VIBCH (Q9KR33) Cryptochrome DASH|
          Length = 461

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 33/111 (29%), Positives = 57/111 (51%)
 Frame = +3

Query: 189 SNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFM 368
           S  +GGE   L   + + +       K     T+N + G ++S K SPWLA G +SP+ +
Sbjct: 197 SAFVGGEQAGLTHCQNYFSSLLPSRYK----ETRNGLDGMDYSTKFSPWLALGAVSPKTI 252

Query: 369 YEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 521
           Y  L+++           +   G +D+ T W+ FELLWR++F +  ++Y +
Sbjct: 253 YAMLQRY-----------EAVHGANDS-TYWIFFELLWREYFYWYARRYGA 291

>CRYD_GIBZE (Q4I1Q6) Putative crytochrome DASH|
          Length = 678

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 43/139 (30%), Positives = 63/139 (45%)
 Frame = +3

Query: 99  VLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVK 278
           +LEP   P + +     PP   + +KSA      GGE  A +RL        M       
Sbjct: 217 LLEPVKAPIISD-----PPQFPEGAKSAHPFK--GGETPAWDRLYHLIKSGAM----TTY 265

Query: 279 DSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTN 458
             T+N + G  +S K+S +LA G ++ R ++ EL K    +  S S         + GT 
Sbjct: 266 QETRNGLLGTEYSTKLSAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTR 325

Query: 459 WLMFELLWRDFFRFVTKKY 515
            + FELLWRD+ R  T K+
Sbjct: 326 AVRFELLWRDYMRLCTFKF 344

>CRYD_IDILO (Q5QXE0) Cryptochrome DASH|
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 36/133 (27%), Positives = 61/133 (45%)
 Frame = +3

Query: 117 IPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNS 296
           +P+L +  +S P   A+     A  +  GGE  AL  L  + +      +      T+N+
Sbjct: 186 LPSLPK-NISYPGFKAETLNELASDDFEGGERAALTHLTSYFSG----ESAGTYKQTRNA 240

Query: 297 IYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFEL 476
           +   + S K SPWLA GCLS R +   L+ +            + +   +  + W+ FEL
Sbjct: 241 LDDFSSSTKFSPWLAQGCLSVRQIMAALRAY------------ETEFGENESSYWISFEL 288

Query: 477 LWRDFFRFVTKKY 515
           LWR++F +   K+
Sbjct: 289 LWREYFFWYALKH 301

>PHR_NEUCR (P27526) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 642

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 33/115 (28%), Positives = 51/115 (44%)
 Frame = +3

Query: 159 MAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWL 338
           +  D K+   S    GE EAL+RL+KF  E         K + + +I     +  +S   
Sbjct: 345 LRDDEKARYHSLWPAGEHEALKRLEKFCDEA------IGKYAERRNIPAMQGTSNLSVHF 398

Query: 339 ATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 503
           A+G LS R         AIR     +  K  +G ++    W+  E+ WRDF++ V
Sbjct: 399 ASGTLSAR--------TAIRTARDRNNTKKLNGGNEGIQRWIS-EVAWRDFYKHV 444

>PHR_ECOLI (P00914) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 472

 Score = 36.2 bits (82), Expect = 0.078
 Identities = 39/151 (25%), Positives = 61/151 (40%)
 Frame = +3

Query: 78  KCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCM 257
           +CV    V   G I     + L+ P       +S   ++    E  A+ +L++F      
Sbjct: 168 ECVAAPKVRSSGSIEPSPSITLNYP------RQSFDTAHFPVEEKAAIAQLRQFCQ---- 217

Query: 258 QPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDG 437
             N A +   Q        + ++S  LATG LSPR     L     +A+  G        
Sbjct: 218 --NGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG-------- 267

Query: 438 TSDAGTNWLMFELLWRDFFRFVTKKYSSAQK 530
              AG+ WL  EL+WR+F+R +   + S  K
Sbjct: 268 ---AGSVWLN-ELIWREFYRHLITYHPSLCK 294

>TIF1B_HUMAN (Q13263) Transcription intermediary factor 1-beta (TIF1-beta)|
           (Tripartite motif protein 28) (Nuclear corepressor
           KAP-1) (KRAB-associated protein 1) (KAP-1)
           (KRAB-interacting protein 1) (KRIP-1) (RING finger
           protein 96)
          Length = 835

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 21/42 (50%), Positives = 25/42 (59%)
 Frame = +3

Query: 108 PGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLK 233
           PG+    GE   +AP A A  S SAA S+  GG AEALE L+
Sbjct: 22  PGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEALELLE 63

>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]|
          Length = 1257

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
 Frame = +3

Query: 6   RYGGFREAVKGLEVRKVLD--APEEVKCVPMKNVL---EPGDIPTL-----------GEL 137
           R+ GFRE  K  +++K+++  +  E++ VP+   +     GD+PT            G++
Sbjct: 425 RFPGFREPEKAEKLKKLMEKASSSELEKVPISGEILREVRGDVPTTRMFNCYSNYEGGQV 484

Query: 138 GLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAE 248
           GL+         K  +    +G E EALERLK  A +
Sbjct: 485 GLTKSSL----EKVISTLEAVGVEGEALERLKALARD 517

>PHR_BACPF (Q04449) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme) (Fragment)
          Length = 339

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 31/100 (31%), Positives = 48/100 (48%)
 Frame = +3

Query: 204 GEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELK 383
           GE  A++RL+ F  +  +   KA +D    SI G +   ++SP++ TG +S R +Y    
Sbjct: 70  GEEHAIKRLQMFTKKR-LSGYKANRDFP--SITGTS---RLSPYIKTGAVSSRSIYY--- 120

Query: 384 KHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 503
            H + A        + D  S       + EL WRDF+R V
Sbjct: 121 -HILNA--------EADSYS---AETFLKELAWRDFYRMV 148

>PHR_SALTY (P25078) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 473

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
 Frame = +3

Query: 81  CVPMKNVLEPGDIPT-LGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCM 257
           CVP   +   G + T L  + L+ P      +      N +      + +L++F A+   
Sbjct: 169 CVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAV------IAQLRQFCAQ--- 219

Query: 258 QPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDG 437
               A + + +      + + ++S  LATG LSPR     L     +A+  G        
Sbjct: 220 ---GADEYALRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGP------- 269

Query: 438 TSDAGTNWLMFELLWRDFFRFVTKKYSSAQK 530
               G+ WL  EL+WR+F+R +   Y +  K
Sbjct: 270 ----GSVWLN-ELIWREFYRHLMTWYPALCK 295

>LSHR_MOUSE (P30730) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor)
          Length = 700

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
 Frame = +3

Query: 66  PEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIG----GEAEALERLK 233
           PE   C P   +  PG    L  L L+  P     S++  G N +      ++++LER++
Sbjct: 35  PEPCDCAPDGALRCPGPRAGLARLSLTYLPVKVIPSQAFRGLNEVVKIEISQSDSLERIE 94

Query: 234 KFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSG 413
             A +  +  ++ +  +T+N +Y       I P   T    PR  Y  +    IR +P  
Sbjct: 95  ANAFDNLLNLSEILIQNTKNLLY-------IEPGAFTNL--PRLKYLSICNTGIRTLPDV 145

Query: 414 S 416
           S
Sbjct: 146 S 146

>LSHR_RAT (P16235) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor)
          Length = 700

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
 Frame = +3

Query: 66  PEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIG----GEAEALERLK 233
           PE   C P   +  PG    L  L L+  P     S++  G N +      ++++LER++
Sbjct: 35  PEPCDCAPDGALRCPGPRAGLARLSLTYLPVKVIPSQAFRGLNEVVKIEISQSDSLERIE 94

Query: 234 KFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIP 407
             A +  +  ++ +  +T+N +Y       I P   T    PR  Y  +    IR +P
Sbjct: 95  ANAFDNLLNLSELLIQNTKNLLY-------IEPGAFTNL--PRLKYLSICNTGIRTLP 143

>TPBG_MACFA (Q4R8Y9) Trophoblast glycoprotein precursor|
          Length = 420

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 352 RQPVASHGEILQEKLAPYMLFWVLSLTALFGCIQHSAANFFSLSRASASPPI 197
           R P A  G +   +LA  +L WV S ++       S++  F  S ASA PP+
Sbjct: 7   RGPAAGDGRLRLARLALVLLGWVSSSSSTSSASSSSSSAPFLASAASAQPPL 58

>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
           (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
           (SH3P12)
          Length = 1292

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 93  KNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKF 239
           K+VLE GDIP  G  GL  P + A    S +  + I   A+ LE  ++F
Sbjct: 683 KSVLEGGDIPLQGLSGLKRPSSSASTKDSESPRHFI--PADYLESTEEF 729

>EXTL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223)|
           (Glucuronyl-galactosyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase)
           (Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
           (Alpha-GalNAcT EXTL2) (EXT-related protein 2)
          Length = 330

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 436 PSPSLGVDPDGIALMACFFNSSYMKRGERQPVASHGEI 323
           P P  G     + + A FFNS Y++  ++QP A H  I
Sbjct: 201 PGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALI 238

>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 472 NCYGEISSGSSQRSTALHRRHPKLHRPLVAHL 567
           N YG +   S+ RS++L+R+HPK  R + + L
Sbjct: 107 NKYGHLDMFSTLRSSSLYRQHPKTLRSICSDL 138

>K502_ACTCH (P43394) Fruit protein PKIWI502|
          Length = 317

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 562 VQPVAGATSDVFCAELYFFVTNLKKSLHSNSNINQFVPASDVPSPSLGVDPDGIALMACF 383
           ++ V G TS+V C+     V +L + +    +I Q +P  D P+  + V   G++    F
Sbjct: 150 IRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSF 209

Query: 382 FNSSY 368
               +
Sbjct: 210 IEEGF 214

>STABP_XENLA (Q63ZM7) STAM-binding protein-like (EC 3.1.2.15)|
          Length = 416

 Score = 25.0 bits (53), Expect(2) = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 EICCRMLYAAEQSCQR*YPE*HIWC*FLLQN 325
           ++CC+ L  +E + QR      I C  LLQN
Sbjct: 254 DVCCKFLQLSENNTQRGVETCGILCGKLLQN 284



 Score = 22.7 bits (47), Expect(2) = 9.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 105 EPGDIPTLGELGLSAP--PAMAQDSK-SAAGSNLIGGEAEALERLKKFAAECC 254
           EP   P L   G   P  PA+ +  K S+ GSN  G  ++ L  +K     CC
Sbjct: 205 EPPVTPLLPSYGTVQPHPPAVDRSLKPSSYGSNSSGVTSDGLRHVKIPRDVCC 257

>Y1272_METMA (Q8PXE8) UPF0245 protein MM1272|
          Length = 380

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 99  VLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAE 215
           ++ PGD+  + ELG     A A+D+KS A   ++G   E
Sbjct: 34  LVNPGDVEKVRELGNITVAAFARDNKSGADIVVVGKRGE 72

>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
           (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
           (SH3P12)
          Length = 1290

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 93  KNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSN 194
           K+VLE GDIP  G  GL  P + A       G N
Sbjct: 450 KSVLEGGDIPLQGLSGLKRPSSSASTKVDRKGGN 483

>TPBG_HUMAN (Q13641) Trophoblast glycoprotein precursor (5T4 oncofetal|
           trophoblast glycoprotein) (5T4 oncotrophoblast
           glycoprotein) (5T4 oncofetal antigen) (M6P1)
          Length = 420

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 352 RQPVASHGEILQEKLAPYMLFWVLSLTALFGCIQHSAANFFSLSRASASPPI 197
           R P A  G +   +LA  +L WV S +        S++  F  S  SA PP+
Sbjct: 7   RGPAAGDGRLRLARLALVLLGWVSSSSPTSSASSFSSSAPFLASAVSAQPPL 58

>RNZ_PYRHO (O58883) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 307

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 354 SPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFEL 476
           SPR+ ++E K+ A+   P    P+D D  +  G   ++F++
Sbjct: 266 SPRYSFKEYKEKALSICPQAIIPRDFDRIAIEGAGDVLFKI 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,744,633
Number of Sequences: 219361
Number of extensions: 1873266
Number of successful extensions: 6046
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6021
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)